Experiment: m.b. Nalidixic 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0435 and Echvi_0436 overlap by 11 nucleotides Echvi_0436 and Echvi_0437 are separated by 101 nucleotides Echvi_0437 and Echvi_0438 are separated by 33 nucleotides Echvi_0438 and Echvi_0439 overlap by 61 nucleotides Echvi_0439 and Echvi_0440 are separated by 212 nucleotides
Echvi_0435: Echvi_0435 - Relaxase/Mobilisation nuclease domain., at 475,579 to 476,757
_0435
Echvi_0436: Echvi_0436 - Bacterial mobilisation protein (MobC)., at 476,747 to 477,091
_0436
Echvi_0437: Echvi_0437 - DNA primase (bacterial type), at 477,193 to 478,056
_0437
Echvi_0438: Echvi_0438 - hypothetical protein, at 478,090 to 478,263
_0438
Echvi_0439: Echvi_0439 - hypothetical protein, at 478,203 to 478,484
_0439
Echvi_0440: Echvi_0440 - DNA repair proteins, at 478,697 to 479,167
_0440
Position (kb) 477
478
479 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 476.201 kb on - strand, within Echvi_0435 at 476.201 kb on - strand, within Echvi_0435 at 476.210 kb on - strand, within Echvi_0435 at 476.266 kb on - strand, within Echvi_0435 at 476.318 kb on + strand, within Echvi_0435 at 476.318 kb on + strand, within Echvi_0435 at 476.319 kb on - strand, within Echvi_0435 at 476.492 kb on + strand, within Echvi_0435 at 476.492 kb on + strand, within Echvi_0435 at 476.552 kb on - strand, within Echvi_0435 at 476.556 kb on + strand, within Echvi_0435 at 476.564 kb on + strand, within Echvi_0435 at 476.565 kb on - strand, within Echvi_0435 at 476.568 kb on + strand, within Echvi_0435 at 476.593 kb on - strand, within Echvi_0435 at 476.593 kb on - strand, within Echvi_0435 at 476.624 kb on - strand, within Echvi_0435 at 476.624 kb on - strand, within Echvi_0435 at 476.624 kb on - strand, within Echvi_0435 at 476.701 kb on - strand at 476.707 kb on - strand at 476.707 kb on - strand at 476.722 kb on + strand at 476.723 kb on - strand at 476.724 kb on + strand at 476.763 kb on - strand at 476.768 kb on + strand at 476.768 kb on + strand at 476.875 kb on + strand, within Echvi_0436 at 476.898 kb on + strand, within Echvi_0436 at 476.898 kb on + strand, within Echvi_0436 at 476.898 kb on + strand, within Echvi_0436 at 477.051 kb on - strand, within Echvi_0436 at 477.181 kb on + strand at 477.183 kb on + strand at 477.195 kb on - strand at 477.246 kb on + strand at 477.248 kb on + strand at 477.294 kb on + strand, within Echvi_0437 at 477.327 kb on + strand, within Echvi_0437 at 477.327 kb on + strand, within Echvi_0437 at 477.350 kb on - strand, within Echvi_0437 at 477.365 kb on - strand, within Echvi_0437 at 477.368 kb on - strand, within Echvi_0437 at 477.452 kb on + strand, within Echvi_0437 at 477.452 kb on + strand, within Echvi_0437 at 477.459 kb on + strand, within Echvi_0437 at 477.459 kb on + strand, within Echvi_0437 at 477.459 kb on + strand, within Echvi_0437 at 477.460 kb on - strand, within Echvi_0437 at 477.486 kb on + strand, within Echvi_0437 at 477.486 kb on + strand, within Echvi_0437 at 477.486 kb on + strand, within Echvi_0437 at 477.487 kb on - strand, within Echvi_0437 at 477.493 kb on + strand, within Echvi_0437 at 477.515 kb on + strand, within Echvi_0437 at 477.515 kb on + strand, within Echvi_0437 at 477.516 kb on - strand, within Echvi_0437 at 477.548 kb on + strand, within Echvi_0437 at 477.549 kb on + strand, within Echvi_0437 at 477.620 kb on + strand, within Echvi_0437 at 477.623 kb on + strand, within Echvi_0437 at 477.623 kb on + strand, within Echvi_0437 at 477.623 kb on + strand, within Echvi_0437 at 477.624 kb on - strand, within Echvi_0437 at 477.681 kb on - strand, within Echvi_0437 at 477.727 kb on - strand, within Echvi_0437 at 477.727 kb on - strand, within Echvi_0437 at 477.806 kb on + strand, within Echvi_0437 at 477.806 kb on + strand, within Echvi_0437 at 477.876 kb on - strand, within Echvi_0437 at 477.901 kb on + strand, within Echvi_0437 at 477.901 kb on + strand, within Echvi_0437 at 478.059 kb on + strand at 478.060 kb on - strand at 478.095 kb on + strand at 478.096 kb on - strand at 478.099 kb on - strand at 478.132 kb on - strand, within Echvi_0438 at 478.163 kb on + strand, within Echvi_0438 at 478.164 kb on - strand, within Echvi_0438 at 478.172 kb on + strand, within Echvi_0438 at 478.172 kb on + strand, within Echvi_0438 at 478.523 kb on + strand at 478.523 kb on + strand at 478.573 kb on + strand at 478.648 kb on + strand at 478.648 kb on + strand at 478.720 kb on - strand at 478.751 kb on - strand, within Echvi_0440 at 478.784 kb on + strand, within Echvi_0440 at 478.784 kb on + strand, within Echvi_0440
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml remove 476,201 - Echvi_0435 0.53 +1.1 476,201 - Echvi_0435 0.53 +0.3 476,210 - Echvi_0435 0.54 -0.6 476,266 - Echvi_0435 0.58 -1.3 476,318 + Echvi_0435 0.63 +0.5 476,318 + Echvi_0435 0.63 -0.4 476,319 - Echvi_0435 0.63 +0.2 476,492 + Echvi_0435 0.77 +1.1 476,492 + Echvi_0435 0.77 -1.2 476,552 - Echvi_0435 0.83 -0.6 476,556 + Echvi_0435 0.83 -0.9 476,564 + Echvi_0435 0.84 +0.5 476,565 - Echvi_0435 0.84 -0.3 476,568 + Echvi_0435 0.84 -0.7 476,593 - Echvi_0435 0.86 +0.3 476,593 - Echvi_0435 0.86 -1.8 476,624 - Echvi_0435 0.89 +1.1 476,624 - Echvi_0435 0.89 +0.9 476,624 - Echvi_0435 0.89 +0.3 476,701 - +1.0 476,707 - -0.4 476,707 - -1.4 476,722 + +0.1 476,723 - -2.9 476,724 + +0.6 476,763 - +0.3 476,768 + +1.0 476,768 + -1.5 476,875 + Echvi_0436 0.37 -1.3 476,898 + Echvi_0436 0.44 +0.1 476,898 + Echvi_0436 0.44 +0.4 476,898 + Echvi_0436 0.44 +0.9 477,051 - Echvi_0436 0.88 +2.1 477,181 + -1.4 477,183 + +0.5 477,195 - -0.6 477,246 + -0.9 477,248 + -0.3 477,294 + Echvi_0437 0.12 +0.4 477,327 + Echvi_0437 0.16 -0.2 477,327 + Echvi_0437 0.16 -1.7 477,350 - Echvi_0437 0.18 +0.2 477,365 - Echvi_0437 0.20 +0.8 477,368 - Echvi_0437 0.20 +1.0 477,452 + Echvi_0437 0.30 +0.3 477,452 + Echvi_0437 0.30 -0.3 477,459 + Echvi_0437 0.31 +0.9 477,459 + Echvi_0437 0.31 +0.6 477,459 + Echvi_0437 0.31 -0.1 477,460 - Echvi_0437 0.31 -1.4 477,486 + Echvi_0437 0.34 +1.8 477,486 + Echvi_0437 0.34 -0.7 477,486 + Echvi_0437 0.34 -1.6 477,487 - Echvi_0437 0.34 +1.6 477,493 + Echvi_0437 0.35 -1.5 477,515 + Echvi_0437 0.37 -1.6 477,515 + Echvi_0437 0.37 +1.6 477,516 - Echvi_0437 0.37 +0.1 477,548 + Echvi_0437 0.41 +1.3 477,549 + Echvi_0437 0.41 +0.8 477,620 + Echvi_0437 0.49 -0.1 477,623 + Echvi_0437 0.50 +1.6 477,623 + Echvi_0437 0.50 +1.4 477,623 + Echvi_0437 0.50 +0.4 477,624 - Echvi_0437 0.50 +1.4 477,681 - Echvi_0437 0.56 +0.6 477,727 - Echvi_0437 0.62 -2.1 477,727 - Echvi_0437 0.62 +0.5 477,806 + Echvi_0437 0.71 -2.1 477,806 + Echvi_0437 0.71 +0.2 477,876 - Echvi_0437 0.79 +0.1 477,901 + Echvi_0437 0.82 +0.3 477,901 + Echvi_0437 0.82 -0.7 478,059 + -0.4 478,060 - +0.5 478,095 + -0.5 478,096 - +0.4 478,099 - -1.3 478,132 - Echvi_0438 0.24 -1.5 478,163 + Echvi_0438 0.42 -0.2 478,164 - Echvi_0438 0.43 -2.2 478,172 + Echvi_0438 0.47 +1.2 478,172 + Echvi_0438 0.47 +0.1 478,523 + -1.4 478,523 + -0.9 478,573 + -0.3 478,648 + +0.7 478,648 + -1.6 478,720 - +0.4 478,751 - Echvi_0440 0.11 -2.6 478,784 + Echvi_0440 0.18 -3.0 478,784 + Echvi_0440 0.18 -2.7
Or see this region's nucleotide sequence