Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0213

Experiment: m.b. Nalidixic 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0212 and Echvi_0213 are separated by 552 nucleotidesEchvi_0213 and Echvi_0214 are separated by 540 nucleotides Echvi_0212: Echvi_0212 - Sulfite oxidase and related enzymes, at 231,260 to 232,507 _0212 Echvi_0213: Echvi_0213 - hypothetical protein, at 233,060 to 233,374 _0213 Echvi_0214: Echvi_0214 - Putative transcription activator, at 233,915 to 234,568 _0214 Position (kb) 233 234Strain fitness (log2 ratio) -2 -1 0 1 2at 232.109 kb on - strand, within Echvi_0212at 232.220 kb on + strand, within Echvi_0212at 232.221 kb on - strand, within Echvi_0212at 232.247 kb on - strand, within Echvi_0212at 232.264 kb on + strand, within Echvi_0212at 232.292 kb on + strand, within Echvi_0212at 232.292 kb on + strand, within Echvi_0212at 232.292 kb on + strand, within Echvi_0212at 232.306 kb on + strand, within Echvi_0212at 232.330 kb on + strand, within Echvi_0212at 232.350 kb on + strand, within Echvi_0212at 232.351 kb on - strand, within Echvi_0212at 232.351 kb on - strand, within Echvi_0212at 232.370 kb on + strand, within Echvi_0212at 232.545 kb on - strandat 232.754 kb on - strandat 232.758 kb on - strandat 232.889 kb on - strandat 232.918 kb on + strandat 232.919 kb on - strandat 232.919 kb on - strandat 233.050 kb on + strandat 233.050 kb on + strandat 233.050 kb on + strandat 233.050 kb on + strandat 233.076 kb on + strandat 233.079 kb on + strandat 233.080 kb on - strandat 233.102 kb on + strand, within Echvi_0213at 233.103 kb on - strand, within Echvi_0213at 233.103 kb on - strand, within Echvi_0213at 233.106 kb on + strand, within Echvi_0213at 233.106 kb on + strand, within Echvi_0213at 233.119 kb on + strand, within Echvi_0213at 233.136 kb on + strand, within Echvi_0213at 233.136 kb on + strand, within Echvi_0213at 233.136 kb on + strand, within Echvi_0213at 233.137 kb on - strand, within Echvi_0213at 233.155 kb on - strand, within Echvi_0213at 233.178 kb on + strand, within Echvi_0213at 233.263 kb on + strand, within Echvi_0213at 233.373 kb on - strandat 233.582 kb on - strandat 233.643 kb on + strandat 233.643 kb on + strandat 233.653 kb on - strandat 233.716 kb on + strandat 233.734 kb on - strandat 233.818 kb on + strandat 233.843 kb on + strandat 234.091 kb on - strand, within Echvi_0214at 234.091 kb on - strand, within Echvi_0214at 234.094 kb on + strand, within Echvi_0214at 234.094 kb on + strand, within Echvi_0214at 234.095 kb on - strand, within Echvi_0214at 234.095 kb on - strand, within Echvi_0214at 234.095 kb on - strand, within Echvi_0214at 234.141 kb on + strand, within Echvi_0214at 234.142 kb on - strand, within Echvi_0214at 234.142 kb on - strand, within Echvi_0214at 234.145 kb on + strand, within Echvi_0214at 234.146 kb on - strand, within Echvi_0214at 234.163 kb on + strand, within Echvi_0214at 234.163 kb on + strand, within Echvi_0214at 234.207 kb on - strand, within Echvi_0214at 234.207 kb on - strand, within Echvi_0214at 234.237 kb on + strand, within Echvi_0214at 234.237 kb on + strand, within Echvi_0214at 234.237 kb on + strand, within Echvi_0214at 234.237 kb on + strand, within Echvi_0214at 234.237 kb on + strand, within Echvi_0214at 234.238 kb on - strand, within Echvi_0214at 234.238 kb on - strand, within Echvi_0214at 234.238 kb on - strand, within Echvi_0214at 234.330 kb on - strand, within Echvi_0214

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.008 mg/ml
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232,109 - Echvi_0212 0.68 +0.3
232,220 + Echvi_0212 0.77 -0.2
232,221 - Echvi_0212 0.77 -2.3
232,247 - Echvi_0212 0.79 +1.7
232,264 + Echvi_0212 0.80 +1.0
232,292 + Echvi_0212 0.83 +0.9
232,292 + Echvi_0212 0.83 +0.5
232,292 + Echvi_0212 0.83 -0.0
232,306 + Echvi_0212 0.84 -0.4
232,330 + Echvi_0212 0.86 -0.1
232,350 + Echvi_0212 0.87 +1.7
232,351 - Echvi_0212 0.87 +0.1
232,351 - Echvi_0212 0.87 -0.3
232,370 + Echvi_0212 0.89 -0.4
232,545 - +1.8
232,754 - -0.1
232,758 - -0.3
232,889 - -0.9
232,918 + -0.3
232,919 - +0.4
232,919 - -1.3
233,050 + +0.0
233,050 + -0.3
233,050 + -0.1
233,050 + -1.5
233,076 + -0.4
233,079 + +0.1
233,080 - +1.4
233,102 + Echvi_0213 0.13 -1.1
233,103 - Echvi_0213 0.14 -0.4
233,103 - Echvi_0213 0.14 -0.4
233,106 + Echvi_0213 0.15 -0.4
233,106 + Echvi_0213 0.15 -0.3
233,119 + Echvi_0213 0.19 -0.1
233,136 + Echvi_0213 0.24 -1.0
233,136 + Echvi_0213 0.24 +0.1
233,136 + Echvi_0213 0.24 -0.1
233,137 - Echvi_0213 0.24 -0.8
233,155 - Echvi_0213 0.30 -1.5
233,178 + Echvi_0213 0.37 -1.0
233,263 + Echvi_0213 0.64 +0.4
233,373 - -0.5
233,582 - +0.7
233,643 + +0.1
233,643 + +0.2
233,653 - -0.9
233,716 + -0.7
233,734 - -1.8
233,818 + -0.2
233,843 + -0.3
234,091 - Echvi_0214 0.27 +0.1
234,091 - Echvi_0214 0.27 +0.8
234,094 + Echvi_0214 0.27 -1.9
234,094 + Echvi_0214 0.27 -0.8
234,095 - Echvi_0214 0.28 +0.4
234,095 - Echvi_0214 0.28 +1.2
234,095 - Echvi_0214 0.28 -0.8
234,141 + Echvi_0214 0.35 -0.4
234,142 - Echvi_0214 0.35 +0.3
234,142 - Echvi_0214 0.35 -0.0
234,145 + Echvi_0214 0.35 +0.2
234,146 - Echvi_0214 0.35 +1.3
234,163 + Echvi_0214 0.38 +0.5
234,163 + Echvi_0214 0.38 -0.5
234,207 - Echvi_0214 0.45 +0.2
234,207 - Echvi_0214 0.45 -0.9
234,237 + Echvi_0214 0.49 +2.0
234,237 + Echvi_0214 0.49 +0.1
234,237 + Echvi_0214 0.49 +0.7
234,237 + Echvi_0214 0.49 +0.6
234,237 + Echvi_0214 0.49 -0.3
234,238 - Echvi_0214 0.49 -0.4
234,238 - Echvi_0214 0.49 +1.1
234,238 - Echvi_0214 0.49 +0.7
234,330 - Echvi_0214 0.63 +1.3

Or see this region's nucleotide sequence