Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0034

Experiment: m.b. Nalidixic 0.008 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Nalidixic 0.008 mg/ml
30,813	+		Echvi_0032	0.35	+0.2
30,813	+		Echvi_0032	0.35	-1.0
30,814	-		Echvi_0032	0.35	+1.6
30,814	-		Echvi_0032	0.35	-0.1
31,010	+		Echvi_0032	0.50	-0.1
31,010	+		Echvi_0032	0.50	-0.1
31,010	+		Echvi_0032	0.50	+0.3
31,011	-		Echvi_0032	0.50	-0.5
31,011	-		Echvi_0032	0.50	-0.3
31,014	+		Echvi_0032	0.50	-0.1
31,015	-		Echvi_0032	0.50	+1.5
31,159	-		Echvi_0032	0.61	+0.5
31,159	-		Echvi_0032	0.61	+1.1
31,161	-		Echvi_0032	0.61	-0.3
31,170	+		Echvi_0032	0.62	-0.5
31,170	+		Echvi_0032	0.62	-2.1
31,175	+		Echvi_0032	0.63	-0.9
31,175	+		Echvi_0032	0.63	-0.3
31,228	-		Echvi_0032	0.67	+0.1
31,239	+		Echvi_0032	0.67	-0.1
31,266	+		Echvi_0032	0.69	+0.3
31,266	+		Echvi_0032	0.69	+0.2
31,266	+		Echvi_0032	0.69	+0.1
31,272	+		Echvi_0032	0.70	-0.1
31,273	-		Echvi_0032	0.70	-0.4
31,277	+		Echvi_0032	0.70	+0.2
31,297	-		Echvi_0032	0.72	-1.5
31,458	-		Echvi_0032	0.84	+0.3
31,464	-		Echvi_0032	0.85	+2.1
31,521	+		Echvi_0032	0.89	+1.1
31,521	+		Echvi_0032	0.89	-1.4
31,521	+		Echvi_0032	0.89	-3.1
31,522	-		Echvi_0032	0.89	-0.3
31,522	-		Echvi_0032	0.89	-0.4
31,522	-		Echvi_0032	0.89	-1.6
31,619	+				+1.7
31,620	-				-0.4
31,890	+				-1.0
31,920	-				-0.9
32,017	+		Echvi_0034	0.13	+0.3
32,038	+		Echvi_0034	0.15	+0.3
32,048	+		Echvi_0034	0.15	-0.3
32,049	-		Echvi_0034	0.15	+1.8
32,049	-		Echvi_0034	0.15	+0.9
32,172	+		Echvi_0034	0.23	+0.2
32,172	+		Echvi_0034	0.23	-0.3
32,172	+		Echvi_0034	0.23	-0.5
32,172	+		Echvi_0034	0.23	-0.9
32,179	+		Echvi_0034	0.23	+1.1
32,180	-		Echvi_0034	0.23	+1.9
32,283	+		Echvi_0034	0.29	+0.9
32,284	-		Echvi_0034	0.29	+2.1
32,362	+		Echvi_0034	0.34	+0.5
32,369	-		Echvi_0034	0.34	+0.8
32,369	-		Echvi_0034	0.34	-0.5
32,446	+		Echvi_0034	0.39	-1.2
32,455	-		Echvi_0034	0.39	+0.5
32,455	-		Echvi_0034	0.39	-0.8
32,517	+		Echvi_0034	0.43	-0.5
32,721	+		Echvi_0034	0.55	-0.5
32,722	-				+0.9
32,726	-		Echvi_0034	0.56	-1.0
32,828	-		Echvi_0034	0.62	+2.5
32,828	-		Echvi_0034	0.62	+0.7
32,830	-		Echvi_0034	0.62	+1.0
33,314	-				+0.3
33,314	-				-1.5
33,354	-				-0.9
33,473	-				-0.7
33,490	+				-0.9
33,490	+				-0.4
33,554	+				-0.7
33,634	-				-1.0
33,638	+				-1.1
33,658	+				-1.2
33,659	-				-0.3
33,670	+				-0.1
33,671	-				+0.1
33,729	+				-0.4
33,855	+		Echvi_0035	0.19	-1.6
33,856	-		Echvi_0035	0.19	-2.6
33,886	+		Echvi_0035	0.21	-2.7
34,115	+		Echvi_0035	0.39	-1.7
34,115	+		Echvi_0035	0.39	-2.3
34,116	-		Echvi_0035	0.39	-0.7
34,116	-		Echvi_0035	0.39	-0.2
34,147	-		Echvi_0035	0.41	-1.2
34,183	+		Echvi_0035	0.44	-1.6
34,184	-		Echvi_0035	0.44	-0.6
34,184	-		Echvi_0035	0.44	+0.1
34,346	-		Echvi_0035	0.57	-1.3
34,427	+		Echvi_0035	0.63	+0.1
34,427	+		Echvi_0035	0.63	+0.2
34,427	+		Echvi_0035	0.63	+0.8
34,445	-		Echvi_0035	0.64	-0.5