Strain Fitness in Pseudomonas sp. RS175 around PFR28_05097

Experiment: trans-aconitic (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	trans-aconitic (C) 5 mM
5,836,380	+				+0.2
5,836,381	-				+1.3
5,836,509	+		PFR28_05096	0.20	+1.6
5,837,199	+				-0.8
5,837,199	+				-0.7
5,837,199	+				-0.7
5,837,199	+				-0.1
5,837,199	+				+0.8
5,837,199	+				+1.8
5,837,199	+				-0.1
5,837,199	+				-0.4
5,837,199	+				+0.4
5,837,200	-				+0.4
5,837,200	-				-0.3
5,837,200	-				+2.0
5,837,200	-				-0.2
5,837,203	+				+0.3
5,837,203	+				-1.5
5,837,203	+				-0.5
5,837,203	+				+0.5
5,837,203	+				+1.1
5,837,203	+				+0.8
5,837,203	+				+0.8
5,837,203	+				+0.1
5,837,204	-				+0.6
5,837,204	-				+1.2
5,837,204	-				-0.2
5,837,204	-				+1.0
5,837,204	-				-0.4
5,837,204	-				-1.1
5,837,204	-				+0.1
5,837,204	-				+1.1
5,837,230	-				+0.1
5,837,230	-				-0.4
5,837,230	-				+0.7
5,837,253	+				+0.2
5,837,462	-		PFR28_05097	0.59	-0.6
5,837,462	-		PFR28_05097	0.59	-0.8
5,837,590	+				+0.9
5,837,590	+				+0.0
5,837,590	+				-0.6
5,837,591	-				+0.2
5,837,601	+				-0.3
5,837,601	+				-1.3
5,837,602	-				-0.5
5,837,729	+				+0.3
5,837,761	+				+0.1
5,837,761	+				-0.1
5,837,761	+				+0.7
5,837,761	+				+0.0
5,837,762	-				+1.2
5,837,762	-				-1.0
5,837,762	-				+0.1
5,837,868	+				+1.1
5,837,868	+				+0.3
5,837,869	-				+0.0
5,837,912	+				-0.0
5,837,912	+				-0.8
5,837,912	+				-0.6
5,837,912	+				+0.1
5,837,913	-				+1.2
5,837,913	-				+0.8
5,837,913	-				-0.1
5,837,913	-				-0.5
5,837,916	+				+1.5
5,837,916	+				+0.0
5,837,916	+				-0.7
5,837,916	+				+0.3
5,837,916	+				+0.2
5,837,916	+				-0.0
5,837,916	+				-0.1
5,837,916	+				-0.6
5,837,916	+				+0.8
5,837,916	+				+0.8
5,837,916	+				+0.4
5,837,916	+				+0.5
5,837,916	+				-0.6
5,837,916	+				+2.1
5,837,916	+				-1.1
5,837,916	+				-0.1
5,837,917	-				+0.1
5,837,917	-				+0.4
5,837,917	-				+0.2
5,837,917	-				+0.1
5,837,917	-				-1.4
5,837,917	-				+0.3
5,837,917	-				-0.4
5,837,917	-				+0.6
5,837,941	+				-0.1
5,837,941	+				+1.5
5,837,941	+				-0.3
5,837,941	+				+0.4
5,837,942	-				+0.3
5,837,942	-				+1.1
5,838,036	+		PFR28_05098	0.29	+0.2
5,838,037	-		PFR28_05098	0.30	+0.8
5,838,037	-		PFR28_05098	0.30	+1.0
5,838,060	-		PFR28_05098	0.36	-0.8
5,838,085	+		PFR28_05098	0.43	+0.4
5,838,086	-		PFR28_05098	0.43	-0.0
5,838,086	-		PFR28_05098	0.43	+0.3
5,838,086	-		PFR28_05098	0.43	-0.4
5,838,086	-		PFR28_05098	0.43	-0.3
5,838,206	+		PFR28_05098	0.77	-0.2
5,838,206	+		PFR28_05098	0.77	+0.3
5,838,206	+		PFR28_05098	0.77	+0.6
5,838,206	+		PFR28_05098	0.77	-0.8
5,838,206	+		PFR28_05098	0.77	-2.7
5,838,206	+		PFR28_05098	0.77	+0.3
5,838,207	-		PFR28_05098	0.77	-0.8
5,838,207	-		PFR28_05098	0.77	-0.4
5,838,207	-		PFR28_05098	0.77	-0.4
5,838,207	-		PFR28_05098	0.77	+0.8
5,838,207	-		PFR28_05098	0.77	-0.2
5,838,207	-		PFR28_05098	0.77	-0.4
5,838,207	-		PFR28_05098	0.77	-1.0
5,838,207	-		PFR28_05098	0.77	-0.4
5,838,208	+		PFR28_05098	0.78	-0.4
5,838,208	+		PFR28_05098	0.78	-0.4
5,838,208	+		PFR28_05098	0.78	-0.1
5,838,208	+		PFR28_05098	0.78	+0.2
5,838,208	+		PFR28_05098	0.78	+0.6
5,838,208	+		PFR28_05098	0.78	-0.3
5,838,208	+		PFR28_05098	0.78	-0.5
5,838,208	+		PFR28_05098	0.78	+0.3
5,838,208	+		PFR28_05098	0.78	-1.0
5,838,208	+		PFR28_05098	0.78	-0.5
5,838,208	+		PFR28_05098	0.78	+0.5
5,838,208	+		PFR28_05098	0.78	+2.2
5,838,208	+		PFR28_05098	0.78	+0.8
5,838,209	-		PFR28_05098	0.78	+0.4
5,838,209	-		PFR28_05098	0.78	-1.9
5,838,209	-		PFR28_05098	0.78	-0.3
5,838,209	-		PFR28_05098	0.78	-0.6
5,838,209	-		PFR28_05098	0.78	+0.4
5,838,209	-		PFR28_05098	0.78	-0.3
5,838,209	-		PFR28_05098	0.78	+0.4
5,838,209	-		PFR28_05098	0.78	-1.1
5,838,209	-		PFR28_05098	0.78	+2.9
5,838,209	-		PFR28_05098	0.78	-1.5
5,838,209	-		PFR28_05098	0.78	+0.6