Strain Fitness in Pseudomonas sp. RS175 around PFR28_04958

Experiment: trans-aconitic (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	trans-aconitic (C) 5 mM
5,654,807	+		PFR28_04957	0.35	+0.2
5,654,808	-		PFR28_04957	0.35	-1.1
5,654,942	+		PFR28_04957	0.57	+0.6
5,654,942	+		PFR28_04957	0.57	+0.2
5,654,942	+		PFR28_04957	0.57	+1.0
5,654,943	-		PFR28_04957	0.58	+0.2
5,654,950	+		PFR28_04957	0.59	-2.0
5,654,950	+		PFR28_04957	0.59	-0.4
5,654,950	+		PFR28_04957	0.59	+0.9
5,654,951	-		PFR28_04957	0.59	-0.6
5,654,958	-		PFR28_04957	0.60	+0.1
5,655,070	+		PFR28_04957	0.79	-0.4
5,655,193	+				-1.3
5,655,204	+				+1.0
5,655,204	+				+1.2
5,655,204	+				+0.2
5,655,204	+				+1.3
5,655,205	-				+0.2
5,655,205	-				+0.3
5,655,279	+				-0.9
5,655,279	+				+0.1
5,655,279	+				+0.6
5,655,280	-				+0.6
5,655,280	-				+1.9
5,655,280	-				-0.4
5,655,303	+				-1.3
5,655,303	+				+0.3
5,655,303	+				-1.5
5,655,313	+				-1.1
5,655,313	+				-0.0
5,655,313	+				+0.5
5,655,314	-				-0.9
5,655,314	-				-0.2
5,655,352	+				-0.4
5,655,401	+				-0.6
5,655,401	+				-2.5
5,655,401	+				-1.5
5,655,402	-				+1.0
5,655,402	-				-0.6
5,655,402	-				-0.7
5,655,402	-				+0.0
5,655,432	+				-0.5
5,655,432	+				-0.3
5,655,432	+				+1.0
5,655,432	+				-0.0
5,655,432	+				+0.3
5,655,432	+				+1.3
5,655,432	+				+0.5
5,655,433	-				-0.5
5,655,433	-				+0.4
5,655,433	-				-0.3
5,655,433	-				+0.9
5,655,433	-				+0.2
5,655,433	-				+1.3
5,655,433	-				-0.3
5,655,433	-				-0.6
5,655,470	+				+0.7
5,655,471	-				-0.9
5,655,471	-				+0.7
5,655,471	-				+0.0
5,655,474	+				+1.1
5,655,475	-				-1.5
5,655,491	-				+0.4
5,655,527	+				-0.3
5,655,528	-				+0.8
5,655,528	-				-1.2
5,655,528	-				-0.2
5,655,680	-		PFR28_04958	0.54	-0.9
5,655,723	+		PFR28_04958	0.70	-0.1
5,655,770	+		PFR28_04958	0.87	-1.1
5,655,771	-		PFR28_04958	0.88	-1.9
5,655,846	-				+0.4
5,655,866	-				-0.0
5,655,892	-				-0.2
5,655,944	+				+0.2
5,655,944	+				-0.2
5,655,944	+				+0.7
5,655,944	+				+0.3
5,655,944	+				+0.9
5,655,944	+				-0.5
5,655,945	-				+0.9
5,655,945	-				+1.7
5,655,945	-				+0.7
5,655,945	-				-0.6
5,655,945	-				-2.2
5,655,945	-				-0.5
5,655,945	-				-1.4
5,655,957	+				-0.5
5,655,957	+				+0.4
5,655,957	+				-0.1
5,655,958	-				+0.1
5,656,152	+		PFR28_04959	0.11	+0.0
5,656,152	+		PFR28_04959	0.11	-0.2
5,656,153	-		PFR28_04959	0.11	+0.5
5,656,346	-		PFR28_04959	0.21	+0.1
5,656,346	-		PFR28_04959	0.21	-0.9
5,656,549	+		PFR28_04959	0.32	+0.7
5,656,550	-		PFR28_04959	0.32	+0.8
5,656,550	-		PFR28_04959	0.32	-1.5
5,656,671	+		PFR28_04959	0.39	+0.2
5,656,672	-		PFR28_04959	0.39	-0.2