Experiment: trans-aconitic (C) 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04873 and PFR28_04874 are separated by 178 nucleotides PFR28_04874 and PFR28_04875 are separated by 175 nucleotides PFR28_04875 and PFR28_04876 are separated by 269 nucleotides PFR28_04876 and PFR28_04877 overlap by 4 nucleotides
PFR28_04873: PFR28_04873 - 33 kDa chaperonin, at 5,567,253 to 5,568,155
_04873
PFR28_04874: PFR28_04874 - Phosphoenolpyruvate carboxykinase (ATP), at 5,568,334 to 5,569,875
_04874
PFR28_04875: PFR28_04875 - hypothetical protein, at 5,570,051 to 5,570,317
_04875
PFR28_04876: PFR28_04876 - hypothetical protein, at 5,570,587 to 5,570,778
_04876
PFR28_04877: PFR28_04877 - Extracellular serine protease, at 5,570,775 to 5,571,839
_04877
Position (kb) 5568
5569
5570 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5567.343 kb on + strand at 5567.343 kb on + strand at 5567.344 kb on - strand, within PFR28_04873 at 5567.691 kb on + strand, within PFR28_04873 at 5567.691 kb on + strand, within PFR28_04873 at 5567.691 kb on + strand, within PFR28_04873 at 5567.691 kb on + strand, within PFR28_04873 at 5567.691 kb on + strand, within PFR28_04873 at 5567.692 kb on - strand, within PFR28_04873 at 5567.692 kb on - strand, within PFR28_04873 at 5567.733 kb on + strand, within PFR28_04873 at 5567.734 kb on - strand, within PFR28_04873 at 5567.905 kb on - strand, within PFR28_04873 at 5568.078 kb on + strand at 5568.078 kb on + strand at 5568.078 kb on + strand at 5568.079 kb on - strand at 5568.079 kb on - strand at 5568.079 kb on - strand at 5568.079 kb on - strand at 5568.079 kb on - strand at 5568.144 kb on - strand at 5568.205 kb on - strand at 5568.272 kb on - strand at 5568.289 kb on + strand at 5568.349 kb on - strand at 5568.349 kb on - strand at 5568.358 kb on + strand at 5568.358 kb on + strand at 5568.358 kb on + strand at 5568.358 kb on + strand at 5568.358 kb on + strand at 5568.358 kb on + strand at 5568.359 kb on - strand at 5568.359 kb on - strand at 5568.359 kb on - strand at 5568.359 kb on - strand at 5568.359 kb on - strand at 5568.491 kb on + strand, within PFR28_04874 at 5568.491 kb on + strand, within PFR28_04874 at 5568.491 kb on + strand, within PFR28_04874 at 5568.492 kb on - strand, within PFR28_04874 at 5568.492 kb on - strand, within PFR28_04874 at 5568.492 kb on - strand, within PFR28_04874 at 5568.492 kb on - strand, within PFR28_04874 at 5568.492 kb on - strand, within PFR28_04874 at 5568.629 kb on + strand, within PFR28_04874 at 5568.630 kb on - strand, within PFR28_04874 at 5568.649 kb on + strand, within PFR28_04874 at 5568.650 kb on - strand, within PFR28_04874 at 5568.650 kb on - strand, within PFR28_04874 at 5568.650 kb on - strand, within PFR28_04874 at 5568.727 kb on + strand, within PFR28_04874 at 5568.727 kb on + strand, within PFR28_04874 at 5568.727 kb on + strand, within PFR28_04874 at 5568.727 kb on + strand, within PFR28_04874 at 5568.728 kb on - strand, within PFR28_04874 at 5568.868 kb on + strand, within PFR28_04874 at 5569.040 kb on - strand, within PFR28_04874 at 5569.106 kb on - strand, within PFR28_04874 at 5569.216 kb on + strand, within PFR28_04874 at 5569.217 kb on - strand, within PFR28_04874 at 5569.308 kb on + strand, within PFR28_04874 at 5569.346 kb on + strand, within PFR28_04874 at 5569.346 kb on + strand, within PFR28_04874 at 5569.347 kb on - strand, within PFR28_04874 at 5569.387 kb on + strand, within PFR28_04874 at 5569.387 kb on + strand, within PFR28_04874 at 5569.388 kb on - strand, within PFR28_04874 at 5569.388 kb on - strand, within PFR28_04874 at 5569.533 kb on + strand, within PFR28_04874 at 5569.534 kb on - strand, within PFR28_04874 at 5569.558 kb on + strand, within PFR28_04874 at 5569.558 kb on + strand, within PFR28_04874 at 5569.558 kb on + strand, within PFR28_04874 at 5569.558 kb on + strand, within PFR28_04874 at 5569.558 kb on + strand, within PFR28_04874 at 5569.559 kb on - strand, within PFR28_04874 at 5569.559 kb on - strand, within PFR28_04874 at 5569.755 kb on + strand at 5569.755 kb on + strand at 5569.756 kb on - strand at 5569.756 kb on - strand at 5569.756 kb on - strand at 5569.873 kb on + strand at 5569.873 kb on + strand at 5569.873 kb on + strand at 5569.873 kb on + strand at 5569.873 kb on + strand at 5569.873 kb on + strand at 5569.873 kb on + strand at 5569.874 kb on - strand at 5569.874 kb on - strand at 5569.874 kb on - strand at 5569.932 kb on - strand at 5570.309 kb on + strand at 5570.310 kb on - strand at 5570.357 kb on + strand at 5570.357 kb on + strand at 5570.357 kb on + strand at 5570.358 kb on - strand at 5570.359 kb on + strand at 5570.359 kb on + strand at 5570.359 kb on + strand at 5570.359 kb on + strand at 5570.359 kb on + strand at 5570.359 kb on + strand at 5570.359 kb on + strand at 5570.360 kb on - strand at 5570.360 kb on - strand at 5570.360 kb on - strand at 5570.360 kb on - strand at 5570.360 kb on - strand at 5570.360 kb on - strand at 5570.377 kb on + strand at 5570.386 kb on - strand at 5570.386 kb on - strand at 5570.409 kb on + strand at 5570.410 kb on - strand at 5570.410 kb on - strand at 5570.515 kb on + strand at 5570.515 kb on + strand at 5570.537 kb on - strand at 5570.541 kb on + strand at 5570.541 kb on + strand at 5570.542 kb on - strand at 5570.542 kb on - strand at 5570.542 kb on - strand at 5570.542 kb on - strand at 5570.542 kb on - strand at 5570.589 kb on - strand at 5570.671 kb on + strand, within PFR28_04876 at 5570.671 kb on + strand, within PFR28_04876 at 5570.671 kb on + strand, within PFR28_04876 at 5570.671 kb on + strand, within PFR28_04876 at 5570.671 kb on + strand, within PFR28_04876 at 5570.672 kb on - strand, within PFR28_04876 at 5570.764 kb on - strand at 5570.839 kb on + strand at 5570.839 kb on + strand at 5570.857 kb on + strand at 5570.858 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction trans-aconitic (C) 5 mM remove 5,567,343 + +0.1 5,567,343 + -0.5 5,567,344 - PFR28_04873 0.10 +0.1 5,567,691 + PFR28_04873 0.49 +1.7 5,567,691 + PFR28_04873 0.49 +0.1 5,567,691 + PFR28_04873 0.49 +0.7 5,567,691 + PFR28_04873 0.49 -0.8 5,567,691 + PFR28_04873 0.49 +0.5 5,567,692 - PFR28_04873 0.49 -0.4 5,567,692 - PFR28_04873 0.49 +0.6 5,567,733 + PFR28_04873 0.53 -0.3 5,567,734 - PFR28_04873 0.53 -1.1 5,567,905 - PFR28_04873 0.72 +0.3 5,568,078 + -0.2 5,568,078 + +0.1 5,568,078 + -0.8 5,568,079 - +0.3 5,568,079 - -0.5 5,568,079 - +0.3 5,568,079 - -0.8 5,568,079 - +0.0 5,568,144 - -0.6 5,568,205 - +1.3 5,568,272 - -1.7 5,568,289 + -0.8 5,568,349 - -2.8 5,568,349 - -2.3 5,568,358 + -2.0 5,568,358 + -1.7 5,568,358 + -2.2 5,568,358 + +0.1 5,568,358 + -1.3 5,568,358 + -2.0 5,568,359 - -3.5 5,568,359 - -1.0 5,568,359 - -2.9 5,568,359 - -0.6 5,568,359 - -1.9 5,568,491 + PFR28_04874 0.10 -2.3 5,568,491 + PFR28_04874 0.10 -2.1 5,568,491 + PFR28_04874 0.10 -1.3 5,568,492 - PFR28_04874 0.10 -1.0 5,568,492 - PFR28_04874 0.10 -0.2 5,568,492 - PFR28_04874 0.10 -0.8 5,568,492 - PFR28_04874 0.10 -1.8 5,568,492 - PFR28_04874 0.10 -0.6 5,568,629 + PFR28_04874 0.19 -1.5 5,568,630 - PFR28_04874 0.19 -0.7 5,568,649 + PFR28_04874 0.20 -1.3 5,568,650 - PFR28_04874 0.20 -0.6 5,568,650 - PFR28_04874 0.20 -1.1 5,568,650 - PFR28_04874 0.20 -3.3 5,568,727 + PFR28_04874 0.25 -1.3 5,568,727 + PFR28_04874 0.25 -2.5 5,568,727 + PFR28_04874 0.25 -0.0 5,568,727 + PFR28_04874 0.25 -2.5 5,568,728 - PFR28_04874 0.26 -0.6 5,568,868 + PFR28_04874 0.35 -2.7 5,569,040 - PFR28_04874 0.46 -2.2 5,569,106 - PFR28_04874 0.50 -1.7 5,569,216 + PFR28_04874 0.57 -0.4 5,569,217 - PFR28_04874 0.57 -2.3 5,569,308 + PFR28_04874 0.63 -2.7 5,569,346 + PFR28_04874 0.66 -1.5 5,569,346 + PFR28_04874 0.66 -1.3 5,569,347 - PFR28_04874 0.66 -1.4 5,569,387 + PFR28_04874 0.68 -2.2 5,569,387 + PFR28_04874 0.68 -0.4 5,569,388 - PFR28_04874 0.68 -2.4 5,569,388 - PFR28_04874 0.68 -1.1 5,569,533 + PFR28_04874 0.78 -2.2 5,569,534 - PFR28_04874 0.78 -0.8 5,569,558 + PFR28_04874 0.79 -2.7 5,569,558 + PFR28_04874 0.79 -2.0 5,569,558 + PFR28_04874 0.79 -2.4 5,569,558 + PFR28_04874 0.79 -1.5 5,569,558 + PFR28_04874 0.79 -1.8 5,569,559 - PFR28_04874 0.79 -2.3 5,569,559 - PFR28_04874 0.79 +0.1 5,569,755 + -2.0 5,569,755 + +0.1 5,569,756 - -1.6 5,569,756 - -1.4 5,569,756 - -3.1 5,569,873 + +1.4 5,569,873 + +0.6 5,569,873 + -0.6 5,569,873 + +0.5 5,569,873 + +1.0 5,569,873 + -0.9 5,569,873 + +0.1 5,569,874 - -0.2 5,569,874 - +0.1 5,569,874 - -0.3 5,569,932 - +1.7 5,570,309 + -0.4 5,570,310 - +0.8 5,570,357 + +0.8 5,570,357 + -0.6 5,570,357 + +1.0 5,570,358 - -1.6 5,570,359 + +1.3 5,570,359 + +0.5 5,570,359 + -0.4 5,570,359 + +1.1 5,570,359 + -0.9 5,570,359 + -0.9 5,570,359 + -0.5 5,570,360 - -0.2 5,570,360 - +0.2 5,570,360 - -0.4 5,570,360 - -0.8 5,570,360 - +2.7 5,570,360 - +0.1 5,570,377 + -0.3 5,570,386 - +0.5 5,570,386 - -0.1 5,570,409 + +0.2 5,570,410 - -1.1 5,570,410 - +0.0 5,570,515 + -0.0 5,570,515 + +0.3 5,570,537 - -0.0 5,570,541 + -2.5 5,570,541 + +0.7 5,570,542 - +0.6 5,570,542 - +0.3 5,570,542 - +0.4 5,570,542 - -1.1 5,570,542 - +0.5 5,570,589 - +0.3 5,570,671 + PFR28_04876 0.44 -1.5 5,570,671 + PFR28_04876 0.44 +0.7 5,570,671 + PFR28_04876 0.44 +0.4 5,570,671 + PFR28_04876 0.44 -1.7 5,570,671 + PFR28_04876 0.44 -1.2 5,570,672 - PFR28_04876 0.44 +0.2 5,570,764 - +0.8 5,570,839 + -0.1 5,570,839 + -0.9 5,570,857 + -0.4 5,570,858 - -1.0
Or see this region's nucleotide sequence