Strain Fitness in Pseudomonas sp. RS175 around PFR28_04824

Experiment: trans-aconitic (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	trans-aconitic (C) 5 mM
5,513,529	+		PFR28_04823	0.71	-0.7
5,513,529	+		PFR28_04823	0.71	-0.6
5,513,530	-		PFR28_04823	0.71	-0.6
5,513,530	-		PFR28_04823	0.71	-0.4
5,513,572	+		PFR28_04823	0.73	-0.5
5,513,573	-		PFR28_04823	0.73	-0.3
5,513,573	-		PFR28_04823	0.73	+0.1
5,513,573	-		PFR28_04823	0.73	+0.2
5,513,698	+		PFR28_04823	0.77	-0.5
5,513,698	+		PFR28_04823	0.77	-1.1
5,513,699	-		PFR28_04823	0.77	-0.2
5,513,749	-		PFR28_04823	0.78	+0.3
5,513,749	-		PFR28_04823	0.78	+0.2
5,513,848	+		PFR28_04823	0.81	+0.2
5,513,848	+		PFR28_04823	0.81	+0.4
5,513,849	-		PFR28_04823	0.82	-0.2
5,513,849	-		PFR28_04823	0.82	-0.6
5,513,849	-		PFR28_04823	0.82	-0.6
5,514,140	-				+1.3
5,514,154	+				+0.0
5,514,155	-				-1.5
5,514,281	-				-0.7
5,514,343	+				+1.0
5,514,343	+				+0.3
5,514,343	+				+0.9
5,514,343	+				-0.4
5,514,344	-				+0.7
5,514,344	-				+0.4
5,514,344	-				+0.9
5,514,344	-				-0.4
5,514,344	-				+0.0
5,514,344	-				+0.0
5,514,356	-				+0.8
5,514,425	+				+0.2
5,514,426	-				+0.2
5,514,426	-				-0.7
5,514,476	-				-3.0
5,514,524	+				+0.7
5,514,525	-				+0.3
5,514,525	-				-0.6
5,514,525	-				+0.5
5,514,525	-				-1.5
5,514,528	+				-0.0
5,514,529	-				-0.8
5,514,529	-				+0.1
5,514,529	-				+0.5
5,514,529	-				+0.1
5,514,586	+				-1.9
5,514,609	-				-0.6
5,514,872	+		PFR28_04824	0.16	-0.8
5,514,872	+		PFR28_04824	0.16	+1.7
5,514,873	-		PFR28_04824	0.16	-3.5
5,514,873	-		PFR28_04824	0.16	-1.7
5,515,199	+		PFR28_04824	0.30	-1.5
5,515,199	+		PFR28_04824	0.30	-2.7
5,515,199	+		PFR28_04824	0.30	-0.4
5,515,199	+		PFR28_04824	0.30	-1.9
5,515,199	+		PFR28_04824	0.30	-1.8
5,515,199	+		PFR28_04824	0.30	-0.7
5,515,200	-		PFR28_04824	0.30	-2.4
5,515,200	-		PFR28_04824	0.30	-0.9
5,515,200	-		PFR28_04824	0.30	-0.3
5,515,255	-		PFR28_04824	0.33	-1.9
5,515,255	-		PFR28_04824	0.33	-1.1
5,515,282	-		PFR28_04824	0.34	+0.3
5,515,391	+		PFR28_04824	0.39	-1.6
5,515,391	+		PFR28_04824	0.39	-3.6
5,515,391	+		PFR28_04824	0.39	-2.0
5,515,391	+		PFR28_04824	0.39	-1.7
5,515,391	+		PFR28_04824	0.39	-1.2
5,515,392	-		PFR28_04824	0.39	-0.7
5,515,392	-		PFR28_04824	0.39	-0.9
5,515,392	-		PFR28_04824	0.39	-1.3
5,515,449	-		PFR28_04824	0.41	-1.0
5,515,449	-		PFR28_04824	0.41	-2.3
5,515,460	+		PFR28_04824	0.42	-0.2
5,515,461	-		PFR28_04824	0.42	-2.4
5,515,461	-		PFR28_04824	0.42	-0.6
5,515,461	-		PFR28_04824	0.42	+0.3
5,515,461	-		PFR28_04824	0.42	-2.2
5,515,461	-		PFR28_04824	0.42	-0.5
5,515,475	+		PFR28_04824	0.43	-1.4
5,515,476	-		PFR28_04824	0.43	-3.1
5,515,533	+		PFR28_04824	0.45	-0.2
5,515,576	+		PFR28_04824	0.47	-2.1
5,515,598	+		PFR28_04824	0.48	-1.5
5,515,682	+		PFR28_04824	0.52	-1.2
5,515,683	-		PFR28_04824	0.52	-1.2
5,515,799	+		PFR28_04824	0.57	-2.5
5,515,800	-		PFR28_04824	0.57	-0.7
5,515,800	-		PFR28_04824	0.57	-0.4
5,515,800	-		PFR28_04824	0.57	-1.5
5,516,240	+		PFR28_04824	0.77	-0.3
5,516,240	+		PFR28_04824	0.77	-1.5
5,516,240	+		PFR28_04824	0.77	-2.9
5,516,240	+		PFR28_04824	0.77	-3.8
5,516,240	+		PFR28_04824	0.77	-1.9
5,516,240	+		PFR28_04824	0.77	+1.7
5,516,240	+		PFR28_04824	0.77	-1.6
5,516,240	+		PFR28_04824	0.77	-1.2
5,516,241	-		PFR28_04824	0.77	-1.9
5,516,241	-		PFR28_04824	0.77	-1.2
5,516,241	-		PFR28_04824	0.77	-0.6
5,516,241	-		PFR28_04824	0.77	-1.7
5,516,241	-		PFR28_04824	0.77	-1.0
5,516,241	-		PFR28_04824	0.77	-2.0
5,516,241	-		PFR28_04824	0.77	+0.9
5,516,730	+				-1.5
5,516,731	-				-2.1
5,516,731	-				+0.3
5,516,759	+				+0.4
5,516,760	-				-0.2
5,516,788	+				-1.9
5,516,808	+				-0.1
5,516,822	+				+0.1
5,516,822	+				-0.3
5,516,822	+				-0.2
5,516,822	+				-0.8
5,516,822	+				-0.1
5,516,822	+				+0.2
5,516,822	+				-0.6
5,516,822	+				-0.3
5,516,822	+				+0.1
5,516,823	-				-1.1
5,516,823	-				+1.0
5,516,823	-				+0.2
5,516,823	-				-0.0
5,516,823	-				-0.1
5,516,823	-				+0.5
5,516,894	-		PFR28_04825	0.12	+0.6
5,516,896	+		PFR28_04825	0.13	-0.6
5,516,896	+		PFR28_04825	0.13	+1.3
5,516,896	+		PFR28_04825	0.13	+0.8
5,516,896	+		PFR28_04825	0.13	+0.1
5,516,896	+		PFR28_04825	0.13	-0.4
5,516,897	-		PFR28_04825	0.13	+0.9
5,516,897	-		PFR28_04825	0.13	-1.1
5,516,944	+		PFR28_04825	0.23	-0.5
5,516,954	-		PFR28_04825	0.26	+0.1
5,516,954	-		PFR28_04825	0.26	-0.9
5,517,263	+				-1.0
5,517,263	+				+0.5
5,517,263	+				+0.1
5,517,263	+				+0.1
5,517,264	-				+0.4
5,517,264	-				-1.3
5,517,264	-				-0.2
5,517,264	-				+1.2
5,517,264	-				-1.2
5,517,264	-				-0.2
5,517,264	-				+0.9
5,517,264	-				-2.6
5,517,264	-				+0.0
5,517,264	-				+0.1
5,517,264	-				-0.3
5,517,264	-				+0.6
5,517,264	-				+0.4
5,517,319	+				-0.1
5,517,319	+				-0.4
5,517,319	+				+0.5
5,517,319	+				+0.8
5,517,319	+				-1.3
5,517,319	+				-0.3
5,517,319	+				+0.4
5,517,319	+				-0.9
5,517,320	-				+0.5
5,517,320	-				+0.1
5,517,320	-				-0.6
5,517,320	-				+0.0
5,517,320	-				-0.1
5,517,321	+				-0.3
5,517,321	+				-0.9
5,517,321	+				+1.0
5,517,321	+				+0.1
5,517,321	+				-1.2
5,517,322	-				+0.4
5,517,322	-				-0.6
5,517,322	-				-0.6
5,517,322	-				-0.3
5,517,332	+				+0.2
5,517,332	+				+0.7
5,517,332	+				-0.8
5,517,332	+				+0.1
5,517,332	+				+0.4
5,517,332	+				-0.8
5,517,333	-				+0.3
5,517,333	-				+1.7