Strain Fitness in Pseudomonas sp. RS175 around PFR28_04567

Experiment: trans-aconitic (C) 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04565 and PFR28_04566 overlap by 4 nucleotidesPFR28_04566 and PFR28_04567 are separated by 82 nucleotidesPFR28_04567 and PFR28_04568 are separated by 58 nucleotides PFR28_04565: PFR28_04565 - Protein RarD, at 5,215,251 to 5,216,180 _04565 PFR28_04566: PFR28_04566 - 4-chloro-allylglycine synthase, at 5,216,177 to 5,216,923 _04566 PFR28_04567: PFR28_04567 - hypothetical protein, at 5,217,006 to 5,217,800 _04567 PFR28_04568: PFR28_04568 - Na(+)/H(+)-K(+) antiporter GerN, at 5,217,859 to 5,219,085 _04568 Position (kb) 5217 5218Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5216.098 kb on + strandat 5216.098 kb on + strandat 5216.099 kb on - strandat 5216.110 kb on + strandat 5216.110 kb on + strandat 5216.186 kb on + strandat 5216.186 kb on + strandat 5216.187 kb on - strandat 5216.187 kb on - strandat 5216.187 kb on - strandat 5216.187 kb on - strandat 5216.224 kb on - strandat 5216.224 kb on - strandat 5216.224 kb on - strandat 5216.244 kb on + strandat 5216.244 kb on + strandat 5216.244 kb on + strandat 5216.244 kb on + strandat 5216.245 kb on - strandat 5216.245 kb on - strandat 5216.245 kb on - strandat 5216.245 kb on - strandat 5216.409 kb on + strand, within PFR28_04566at 5216.409 kb on + strand, within PFR28_04566at 5216.409 kb on + strand, within PFR28_04566at 5216.410 kb on - strand, within PFR28_04566at 5216.410 kb on - strand, within PFR28_04566at 5216.488 kb on - strand, within PFR28_04566at 5216.500 kb on + strand, within PFR28_04566at 5216.500 kb on + strand, within PFR28_04566at 5216.501 kb on - strand, within PFR28_04566at 5216.538 kb on + strand, within PFR28_04566at 5216.538 kb on + strand, within PFR28_04566at 5216.538 kb on + strand, within PFR28_04566at 5216.538 kb on + strand, within PFR28_04566at 5216.538 kb on + strand, within PFR28_04566at 5216.538 kb on + strand, within PFR28_04566at 5216.538 kb on + strand, within PFR28_04566at 5216.539 kb on - strand, within PFR28_04566at 5216.539 kb on - strand, within PFR28_04566at 5216.539 kb on - strand, within PFR28_04566at 5216.694 kb on + strand, within PFR28_04566at 5216.694 kb on + strand, within PFR28_04566at 5216.695 kb on - strand, within PFR28_04566at 5216.695 kb on - strand, within PFR28_04566at 5216.695 kb on - strand, within PFR28_04566at 5216.695 kb on - strand, within PFR28_04566at 5216.695 kb on - strand, within PFR28_04566at 5216.695 kb on - strand, within PFR28_04566at 5216.695 kb on - strand, within PFR28_04566at 5216.706 kb on + strand, within PFR28_04566at 5216.707 kb on - strand, within PFR28_04566at 5216.707 kb on - strand, within PFR28_04566at 5216.707 kb on - strand, within PFR28_04566at 5216.715 kb on + strand, within PFR28_04566at 5216.715 kb on + strand, within PFR28_04566at 5216.716 kb on - strand, within PFR28_04566at 5216.716 kb on - strand, within PFR28_04566at 5216.733 kb on + strand, within PFR28_04566at 5216.733 kb on + strand, within PFR28_04566at 5216.775 kb on + strand, within PFR28_04566at 5216.775 kb on + strand, within PFR28_04566at 5216.776 kb on - strand, within PFR28_04566at 5216.779 kb on + strand, within PFR28_04566at 5216.779 kb on + strand, within PFR28_04566at 5216.779 kb on + strand, within PFR28_04566at 5216.780 kb on - strand, within PFR28_04566at 5216.780 kb on - strand, within PFR28_04566at 5216.780 kb on - strand, within PFR28_04566at 5216.780 kb on - strand, within PFR28_04566at 5216.820 kb on + strand, within PFR28_04566at 5216.820 kb on + strand, within PFR28_04566at 5216.820 kb on + strand, within PFR28_04566at 5216.820 kb on + strand, within PFR28_04566at 5216.820 kb on + strand, within PFR28_04566at 5216.820 kb on + strand, within PFR28_04566at 5216.821 kb on - strand, within PFR28_04566at 5216.821 kb on - strand, within PFR28_04566at 5216.821 kb on - strand, within PFR28_04566at 5216.821 kb on - strand, within PFR28_04566at 5216.821 kb on - strand, within PFR28_04566at 5216.821 kb on - strand, within PFR28_04566at 5216.821 kb on - strand, within PFR28_04566at 5216.821 kb on - strand, within PFR28_04566at 5216.821 kb on - strand, within PFR28_04566at 5216.821 kb on - strand, within PFR28_04566at 5217.178 kb on + strand, within PFR28_04567at 5217.178 kb on + strand, within PFR28_04567at 5217.178 kb on + strand, within PFR28_04567at 5217.178 kb on + strand, within PFR28_04567at 5217.179 kb on - strand, within PFR28_04567at 5217.179 kb on - strand, within PFR28_04567at 5217.179 kb on - strand, within PFR28_04567at 5217.179 kb on - strand, within PFR28_04567at 5217.202 kb on + strand, within PFR28_04567at 5217.202 kb on + strand, within PFR28_04567at 5217.202 kb on + strand, within PFR28_04567at 5217.203 kb on - strand, within PFR28_04567at 5217.229 kb on + strand, within PFR28_04567at 5217.229 kb on + strand, within PFR28_04567at 5217.230 kb on - strand, within PFR28_04567at 5217.230 kb on - strand, within PFR28_04567at 5217.230 kb on - strand, within PFR28_04567at 5217.230 kb on - strand, within PFR28_04567at 5217.337 kb on + strand, within PFR28_04567at 5217.337 kb on + strand, within PFR28_04567at 5217.337 kb on + strand, within PFR28_04567at 5217.337 kb on + strand, within PFR28_04567at 5217.337 kb on + strand, within PFR28_04567at 5217.338 kb on - strand, within PFR28_04567at 5217.338 kb on - strand, within PFR28_04567at 5217.338 kb on - strand, within PFR28_04567at 5217.338 kb on - strand, within PFR28_04567at 5217.338 kb on - strand, within PFR28_04567at 5217.343 kb on + strand, within PFR28_04567at 5217.400 kb on + strand, within PFR28_04567at 5217.478 kb on + strand, within PFR28_04567at 5217.478 kb on + strand, within PFR28_04567at 5217.493 kb on + strand, within PFR28_04567at 5217.493 kb on + strand, within PFR28_04567at 5217.493 kb on + strand, within PFR28_04567at 5217.493 kb on + strand, within PFR28_04567at 5217.493 kb on + strand, within PFR28_04567at 5217.493 kb on + strand, within PFR28_04567at 5217.493 kb on + strand, within PFR28_04567at 5217.494 kb on - strand, within PFR28_04567at 5217.494 kb on - strand, within PFR28_04567at 5217.494 kb on - strand, within PFR28_04567at 5217.494 kb on - strand, within PFR28_04567at 5217.494 kb on - strand, within PFR28_04567at 5217.530 kb on + strand, within PFR28_04567at 5217.531 kb on - strand, within PFR28_04567at 5217.531 kb on - strand, within PFR28_04567at 5217.531 kb on - strand, within PFR28_04567at 5217.531 kb on - strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.532 kb on + strand, within PFR28_04567at 5217.533 kb on - strand, within PFR28_04567at 5217.533 kb on - strand, within PFR28_04567at 5217.533 kb on - strand, within PFR28_04567at 5217.533 kb on - strand, within PFR28_04567at 5217.533 kb on - strand, within PFR28_04567at 5217.533 kb on - strand, within PFR28_04567at 5217.533 kb on - strand, within PFR28_04567at 5217.533 kb on - strand, within PFR28_04567at 5217.533 kb on - strand, within PFR28_04567at 5217.533 kb on - strand, within PFR28_04567at 5217.533 kb on - strand, within PFR28_04567at 5217.533 kb on - strand, within PFR28_04567at 5217.533 kb on - strand, within PFR28_04567at 5217.533 kb on - strand, within PFR28_04567at 5217.545 kb on - strand, within PFR28_04567at 5217.548 kb on + strand, within PFR28_04567at 5217.548 kb on + strand, within PFR28_04567at 5217.548 kb on + strand, within PFR28_04567at 5217.548 kb on + strand, within PFR28_04567at 5217.548 kb on + strand, within PFR28_04567at 5217.548 kb on + strand, within PFR28_04567at 5217.548 kb on + strand, within PFR28_04567at 5217.548 kb on + strand, within PFR28_04567at 5217.548 kb on + strand, within PFR28_04567at 5217.548 kb on + strand, within PFR28_04567at 5217.548 kb on + strand, within PFR28_04567at 5217.548 kb on + strand, within PFR28_04567at 5217.549 kb on - strand, within PFR28_04567at 5217.549 kb on - strand, within PFR28_04567at 5217.549 kb on - strand, within PFR28_04567at 5217.549 kb on - strand, within PFR28_04567at 5217.549 kb on - strand, within PFR28_04567at 5217.549 kb on - strand, within PFR28_04567at 5217.549 kb on - strand, within PFR28_04567at 5217.549 kb on - strand, within PFR28_04567at 5217.549 kb on - strand, within PFR28_04567at 5217.549 kb on - strand, within PFR28_04567at 5217.549 kb on - strand, within PFR28_04567at 5217.673 kb on + strand, within PFR28_04567at 5217.696 kb on - strand, within PFR28_04567at 5217.765 kb on + strandat 5217.765 kb on + strandat 5217.766 kb on - strandat 5217.802 kb on + strandat 5217.802 kb on + strandat 5217.802 kb on + strandat 5217.803 kb on - strandat 5217.835 kb on - strandat 5218.141 kb on + strand, within PFR28_04568at 5218.141 kb on + strand, within PFR28_04568at 5218.142 kb on - strand, within PFR28_04568at 5218.142 kb on - strand, within PFR28_04568at 5218.294 kb on + strand, within PFR28_04568at 5218.295 kb on - strand, within PFR28_04568at 5218.355 kb on + strand, within PFR28_04568at 5218.356 kb on - strand, within PFR28_04568at 5218.356 kb on - strand, within PFR28_04568at 5218.512 kb on + strand, within PFR28_04568at 5218.512 kb on + strand, within PFR28_04568at 5218.512 kb on + strand, within PFR28_04568at 5218.513 kb on - strand, within PFR28_04568at 5218.513 kb on - strand, within PFR28_04568at 5218.513 kb on - strand, within PFR28_04568at 5218.513 kb on - strand, within PFR28_04568at 5218.735 kb on + strand, within PFR28_04568at 5218.736 kb on - strand, within PFR28_04568

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Per-strain Table

Position Strand Gene LocusTag Fraction trans-aconitic (C) 5 mM
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5,216,098 + -2.0
5,216,098 + -0.5
5,216,099 - -0.9
5,216,110 + -2.5
5,216,110 + -3.5
5,216,186 + -2.3
5,216,186 + -1.7
5,216,187 - -3.9
5,216,187 - -1.1
5,216,187 - -0.5
5,216,187 - -1.2
5,216,224 - -1.4
5,216,224 - +0.7
5,216,224 - -0.8
5,216,244 + -1.5
5,216,244 + -1.2
5,216,244 + -3.1
5,216,244 + -1.6
5,216,245 - -0.7
5,216,245 - -0.3
5,216,245 - -2.1
5,216,245 - -0.4
5,216,409 + PFR28_04566 0.31 -2.1
5,216,409 + PFR28_04566 0.31 -2.8
5,216,409 + PFR28_04566 0.31 -2.9
5,216,410 - PFR28_04566 0.31 -2.9
5,216,410 - PFR28_04566 0.31 -0.6
5,216,488 - PFR28_04566 0.42 -0.7
5,216,500 + PFR28_04566 0.43 -3.1
5,216,500 + PFR28_04566 0.43 -1.2
5,216,501 - PFR28_04566 0.43 -0.8
5,216,538 + PFR28_04566 0.48 -3.7
5,216,538 + PFR28_04566 0.48 -1.3
5,216,538 + PFR28_04566 0.48 -0.7
5,216,538 + PFR28_04566 0.48 -1.3
5,216,538 + PFR28_04566 0.48 -0.8
5,216,538 + PFR28_04566 0.48 -1.7
5,216,538 + PFR28_04566 0.48 -2.3
5,216,539 - PFR28_04566 0.48 +0.1
5,216,539 - PFR28_04566 0.48 +0.2
5,216,539 - PFR28_04566 0.48 +0.1
5,216,694 + PFR28_04566 0.69 -1.9
5,216,694 + PFR28_04566 0.69 -2.1
5,216,695 - PFR28_04566 0.69 -0.6
5,216,695 - PFR28_04566 0.69 -1.0
5,216,695 - PFR28_04566 0.69 -2.0
5,216,695 - PFR28_04566 0.69 -0.4
5,216,695 - PFR28_04566 0.69 -0.7
5,216,695 - PFR28_04566 0.69 -1.1
5,216,695 - PFR28_04566 0.69 -0.7
5,216,706 + PFR28_04566 0.71 -1.8
5,216,707 - PFR28_04566 0.71 -1.7
5,216,707 - PFR28_04566 0.71 -1.1
5,216,707 - PFR28_04566 0.71 +1.7
5,216,715 + PFR28_04566 0.72 -1.8
5,216,715 + PFR28_04566 0.72 -2.0
5,216,716 - PFR28_04566 0.72 -1.4
5,216,716 - PFR28_04566 0.72 -1.3
5,216,733 + PFR28_04566 0.74 -2.2
5,216,733 + PFR28_04566 0.74 -1.2
5,216,775 + PFR28_04566 0.80 -2.6
5,216,775 + PFR28_04566 0.80 -2.0
5,216,776 - PFR28_04566 0.80 -1.5
5,216,779 + PFR28_04566 0.81 -4.1
5,216,779 + PFR28_04566 0.81 -3.6
5,216,779 + PFR28_04566 0.81 -2.0
5,216,780 - PFR28_04566 0.81 -2.3
5,216,780 - PFR28_04566 0.81 +1.4
5,216,780 - PFR28_04566 0.81 -1.2
5,216,780 - PFR28_04566 0.81 -2.6
5,216,820 + PFR28_04566 0.86 -1.9
5,216,820 + PFR28_04566 0.86 -1.5
5,216,820 + PFR28_04566 0.86 -2.5
5,216,820 + PFR28_04566 0.86 -3.5
5,216,820 + PFR28_04566 0.86 -1.4
5,216,820 + PFR28_04566 0.86 -2.5
5,216,821 - PFR28_04566 0.86 -1.5
5,216,821 - PFR28_04566 0.86 -2.2
5,216,821 - PFR28_04566 0.86 -2.1
5,216,821 - PFR28_04566 0.86 -1.7
5,216,821 - PFR28_04566 0.86 -1.1
5,216,821 - PFR28_04566 0.86 +0.4
5,216,821 - PFR28_04566 0.86 -1.3
5,216,821 - PFR28_04566 0.86 -1.7
5,216,821 - PFR28_04566 0.86 -2.4
5,216,821 - PFR28_04566 0.86 -1.4
5,217,178 + PFR28_04567 0.22 -0.4
5,217,178 + PFR28_04567 0.22 -1.2
5,217,178 + PFR28_04567 0.22 -1.2
5,217,178 + PFR28_04567 0.22 -3.2
5,217,179 - PFR28_04567 0.22 -1.5
5,217,179 - PFR28_04567 0.22 +1.5
5,217,179 - PFR28_04567 0.22 -0.5
5,217,179 - PFR28_04567 0.22 -0.4
5,217,202 + PFR28_04567 0.25 -0.9
5,217,202 + PFR28_04567 0.25 -1.0
5,217,202 + PFR28_04567 0.25 +0.1
5,217,203 - PFR28_04567 0.25 -0.2
5,217,229 + PFR28_04567 0.28 -2.4
5,217,229 + PFR28_04567 0.28 -2.9
5,217,230 - PFR28_04567 0.28 +0.9
5,217,230 - PFR28_04567 0.28 +0.2
5,217,230 - PFR28_04567 0.28 +0.6
5,217,230 - PFR28_04567 0.28 +0.5
5,217,337 + PFR28_04567 0.42 -1.3
5,217,337 + PFR28_04567 0.42 -1.7
5,217,337 + PFR28_04567 0.42 -1.3
5,217,337 + PFR28_04567 0.42 +0.1
5,217,337 + PFR28_04567 0.42 -1.9
5,217,338 - PFR28_04567 0.42 +1.4
5,217,338 - PFR28_04567 0.42 -1.3
5,217,338 - PFR28_04567 0.42 +0.0
5,217,338 - PFR28_04567 0.42 +0.1
5,217,338 - PFR28_04567 0.42 -1.7
5,217,343 + PFR28_04567 0.42 -2.0
5,217,400 + PFR28_04567 0.50 -1.6
5,217,478 + PFR28_04567 0.59 -3.4
5,217,478 + PFR28_04567 0.59 -0.9
5,217,493 + PFR28_04567 0.61 +0.1
5,217,493 + PFR28_04567 0.61 -2.7
5,217,493 + PFR28_04567 0.61 -0.7
5,217,493 + PFR28_04567 0.61 -1.2
5,217,493 + PFR28_04567 0.61 -1.0
5,217,493 + PFR28_04567 0.61 -1.6
5,217,493 + PFR28_04567 0.61 -0.9
5,217,494 - PFR28_04567 0.61 -1.2
5,217,494 - PFR28_04567 0.61 -2.6
5,217,494 - PFR28_04567 0.61 -0.2
5,217,494 - PFR28_04567 0.61 -1.8
5,217,494 - PFR28_04567 0.61 -2.3
5,217,530 + PFR28_04567 0.66 -2.1
5,217,531 - PFR28_04567 0.66 +0.7
5,217,531 - PFR28_04567 0.66 +0.5
5,217,531 - PFR28_04567 0.66 -1.3
5,217,531 - PFR28_04567 0.66 -1.6
5,217,532 + PFR28_04567 0.66 -0.6
5,217,532 + PFR28_04567 0.66 -1.3
5,217,532 + PFR28_04567 0.66 -1.8
5,217,532 + PFR28_04567 0.66 -2.7
5,217,532 + PFR28_04567 0.66 -1.7
5,217,532 + PFR28_04567 0.66 -1.3
5,217,532 + PFR28_04567 0.66 -2.5
5,217,532 + PFR28_04567 0.66 -1.5
5,217,532 + PFR28_04567 0.66 +1.7
5,217,532 + PFR28_04567 0.66 -1.4
5,217,532 + PFR28_04567 0.66 -2.3
5,217,532 + PFR28_04567 0.66 +0.3
5,217,532 + PFR28_04567 0.66 +0.0
5,217,532 + PFR28_04567 0.66 -1.8
5,217,532 + PFR28_04567 0.66 -2.6
5,217,533 - PFR28_04567 0.66 -1.5
5,217,533 - PFR28_04567 0.66 -0.6
5,217,533 - PFR28_04567 0.66 -0.7
5,217,533 - PFR28_04567 0.66 -1.0
5,217,533 - PFR28_04567 0.66 -1.1
5,217,533 - PFR28_04567 0.66 +0.1
5,217,533 - PFR28_04567 0.66 +0.4
5,217,533 - PFR28_04567 0.66 -2.1
5,217,533 - PFR28_04567 0.66 +0.7
5,217,533 - PFR28_04567 0.66 +1.0
5,217,533 - PFR28_04567 0.66 -0.2
5,217,533 - PFR28_04567 0.66 -2.2
5,217,533 - PFR28_04567 0.66 -2.4
5,217,533 - PFR28_04567 0.66 -0.5
5,217,545 - PFR28_04567 0.68 -0.4
5,217,548 + PFR28_04567 0.68 -0.7
5,217,548 + PFR28_04567 0.68 -2.2
5,217,548 + PFR28_04567 0.68 -0.3
5,217,548 + PFR28_04567 0.68 -4.3
5,217,548 + PFR28_04567 0.68 -3.7
5,217,548 + PFR28_04567 0.68 -2.5
5,217,548 + PFR28_04567 0.68 -1.2
5,217,548 + PFR28_04567 0.68 -1.0
5,217,548 + PFR28_04567 0.68 -1.6
5,217,548 + PFR28_04567 0.68 -1.6
5,217,548 + PFR28_04567 0.68 -1.3
5,217,548 + PFR28_04567 0.68 -2.9
5,217,549 - PFR28_04567 0.68 +0.9
5,217,549 - PFR28_04567 0.68 -0.6
5,217,549 - PFR28_04567 0.68 +0.1
5,217,549 - PFR28_04567 0.68 +0.3
5,217,549 - PFR28_04567 0.68 -0.6
5,217,549 - PFR28_04567 0.68 -1.1
5,217,549 - PFR28_04567 0.68 +1.1
5,217,549 - PFR28_04567 0.68 -0.6
5,217,549 - PFR28_04567 0.68 -0.2
5,217,549 - PFR28_04567 0.68 +0.7
5,217,549 - PFR28_04567 0.68 +1.7
5,217,673 + PFR28_04567 0.84 -1.1
5,217,696 - PFR28_04567 0.87 +0.2
5,217,765 + -2.1
5,217,765 + -3.1
5,217,766 - -0.3
5,217,802 + -0.1
5,217,802 + -0.2
5,217,802 + -2.5
5,217,803 - +0.3
5,217,835 - +0.2
5,218,141 + PFR28_04568 0.23 -1.8
5,218,141 + PFR28_04568 0.23 -1.0
5,218,142 - PFR28_04568 0.23 +0.7
5,218,142 - PFR28_04568 0.23 +0.9
5,218,294 + PFR28_04568 0.35 -0.6
5,218,295 - PFR28_04568 0.36 +0.6
5,218,355 + PFR28_04568 0.40 +0.5
5,218,356 - PFR28_04568 0.41 -1.1
5,218,356 - PFR28_04568 0.41 +1.1
5,218,512 + PFR28_04568 0.53 -0.8
5,218,512 + PFR28_04568 0.53 -0.5
5,218,512 + PFR28_04568 0.53 -2.9
5,218,513 - PFR28_04568 0.53 -1.1
5,218,513 - PFR28_04568 0.53 +0.3
5,218,513 - PFR28_04568 0.53 -0.1
5,218,513 - PFR28_04568 0.53 +0.0
5,218,735 + PFR28_04568 0.71 -0.1
5,218,736 - PFR28_04568 0.71 +1.1

Or see this region's nucleotide sequence