Strain Fitness in Pseudomonas sp. RS175 around PFR28_04436

Experiment: trans-aconitic (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	trans-aconitic (C) 5 mM
5,049,605	+		PFR28_04435	0.73	+0.0
5,049,605	+		PFR28_04435	0.73	+0.3
5,049,605	+		PFR28_04435	0.73	-1.0
5,049,605	+		PFR28_04435	0.73	-2.3
5,049,605	+		PFR28_04435	0.73	+0.1
5,049,605	+		PFR28_04435	0.73	-1.7
5,049,605	+		PFR28_04435	0.73	+0.3
5,049,605	+		PFR28_04435	0.73	-3.0
5,049,605	+		PFR28_04435	0.73	+1.0
5,049,605	+		PFR28_04435	0.73	-3.1
5,049,605	+		PFR28_04435	0.73	+0.1
5,049,605	+		PFR28_04435	0.73	+0.3
5,049,605	+		PFR28_04435	0.73	-0.7
5,049,606	-		PFR28_04435	0.73	+0.1
5,049,606	-		PFR28_04435	0.73	-2.8
5,049,606	-		PFR28_04435	0.73	+1.2
5,049,606	-		PFR28_04435	0.73	+0.1
5,049,606	-		PFR28_04435	0.73	-1.0
5,049,606	-		PFR28_04435	0.73	-1.3
5,049,606	-		PFR28_04435	0.73	-1.6
5,049,606	-		PFR28_04435	0.73	-0.8
5,049,825	+		PFR28_04435	0.84	-0.0
5,049,875	+		PFR28_04435	0.86	-0.9
5,049,876	-		PFR28_04435	0.86	-0.7
5,050,208	+				-2.1
5,050,209	-				-0.5
5,050,209	-				-1.1
5,050,210	+				+0.2
5,050,210	+				-0.2
5,050,210	+				-0.1
5,050,210	+				+0.9
5,050,210	+				+0.1
5,050,211	-				-1.0
5,050,211	-				-1.6
5,050,237	-				-0.9
5,050,291	+				-1.4
5,050,292	-				-0.6
5,050,574	+		PFR28_04436	0.24	-2.5
5,050,575	-		PFR28_04436	0.24	+0.1
5,050,715	-		PFR28_04436	0.34	-2.9
5,050,961	+		PFR28_04436	0.51	-0.9
5,050,961	+		PFR28_04436	0.51	-3.2
5,050,961	+		PFR28_04436	0.51	-3.1
5,050,962	-		PFR28_04436	0.51	-1.9
5,050,962	-		PFR28_04436	0.51	-3.0
5,050,962	-		PFR28_04436	0.51	-1.6
5,050,964	+		PFR28_04436	0.52	-2.2
5,050,964	+		PFR28_04436	0.52	-2.7
5,050,965	-		PFR28_04436	0.52	-0.3
5,050,965	-		PFR28_04436	0.52	-0.7
5,050,965	-		PFR28_04436	0.52	-0.5
5,050,965	-		PFR28_04436	0.52	-1.4
5,050,965	-		PFR28_04436	0.52	-0.3
5,050,965	-		PFR28_04436	0.52	-0.6
5,050,965	-		PFR28_04436	0.52	-2.6
5,050,965	-		PFR28_04436	0.52	-1.3
5,050,965	-		PFR28_04436	0.52	-2.4
5,051,109	-		PFR28_04436	0.62	+2.7
5,051,126	+		PFR28_04436	0.63	-0.9
5,051,126	+		PFR28_04436	0.63	-2.9
5,051,126	+		PFR28_04436	0.63	-1.1
5,051,127	-		PFR28_04436	0.63	-2.3
5,051,127	-		PFR28_04436	0.63	-2.4
5,051,127	-		PFR28_04436	0.63	-2.8
5,051,198	+		PFR28_04436	0.68	+1.3
5,051,198	+		PFR28_04436	0.68	-0.9
5,051,198	+		PFR28_04436	0.68	-1.9
5,051,199	-		PFR28_04436	0.68	-1.5
5,051,199	-		PFR28_04436	0.68	-1.4
5,051,312	+		PFR28_04436	0.76	-0.1
5,051,312	+		PFR28_04436	0.76	-2.9
5,051,312	+		PFR28_04436	0.76	-3.4
5,051,312	+		PFR28_04436	0.76	-3.0
5,051,312	+		PFR28_04436	0.76	-2.3
5,051,313	-		PFR28_04436	0.76	-0.3
5,051,313	-		PFR28_04436	0.76	-1.1
5,051,313	-		PFR28_04436	0.76	-1.0
5,051,313	-		PFR28_04436	0.76	-3.6
5,051,313	-		PFR28_04436	0.76	-2.1
5,051,373	-		PFR28_04436	0.81	+0.1
5,051,441	+		PFR28_04436	0.86	-2.9
5,051,450	+		PFR28_04436	0.86	-2.6
5,051,632	+				+0.1
5,051,632	+				-0.6
5,051,761	+				-0.5
5,051,762	-				+0.4
5,051,762	-				+1.0
5,051,762	-				+0.1
5,051,762	-				+0.0
5,051,762	-				+0.9
5,051,762	-				+1.1
5,051,798	+				+0.6
5,051,798	+				+0.2
5,051,798	+				+2.3
5,051,798	+				+1.0
5,051,798	+				+0.2
5,051,798	+				-1.0
5,051,798	+				-0.8
5,051,798	+				-1.1
5,051,798	+				-1.7
5,051,798	+				+1.7
5,051,798	+				+0.3
5,051,799	-				+1.7
5,051,799	-				-0.1
5,051,799	-				+0.1
5,051,799	-				+1.1
5,051,799	-				+1.2
5,051,808	+				+0.6
5,051,809	-				+1.2
5,051,809	-				+0.3
5,051,809	-				-0.2
5,051,809	-				-0.9
5,051,892	-				+0.9
5,051,900	-				+0.9
5,051,968	-				-0.4
5,051,968	-				+0.3
5,051,968	-				-0.5
5,051,985	-				-1.3