Strain Fitness in Pseudomonas sp. RS175 around PFR28_03413

Experiment: trans-aconitic (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	trans-aconitic (C) 5 mM
3,921,154	+				-2.2
3,921,155	-				+0.2
3,921,197	+		PFR28_03412	0.12	-0.4
3,921,197	+		PFR28_03412	0.12	-0.2
3,921,197	+		PFR28_03412	0.12	-0.9
3,921,198	-		PFR28_03412	0.12	-0.8
3,921,198	-		PFR28_03412	0.12	+1.6
3,921,198	-		PFR28_03412	0.12	-1.9
3,921,199	+		PFR28_03412	0.12	-1.8
3,921,199	+		PFR28_03412	0.12	-0.0
3,921,199	+		PFR28_03412	0.12	-2.4
3,921,199	+		PFR28_03412	0.12	-1.2
3,921,199	+		PFR28_03412	0.12	-1.6
3,921,199	+		PFR28_03412	0.12	+0.1
3,921,199	+		PFR28_03412	0.12	-1.8
3,921,199	+		PFR28_03412	0.12	-0.2
3,921,200	-		PFR28_03412	0.12	-1.2
3,921,200	-		PFR28_03412	0.12	-0.9
3,921,200	-		PFR28_03412	0.12	+1.8
3,921,217	+		PFR28_03412	0.14	+1.0
3,921,218	-		PFR28_03412	0.14	-0.0
3,921,243	-		PFR28_03412	0.16	+0.6
3,921,402	-		PFR28_03412	0.31	+0.7
3,921,402	-		PFR28_03412	0.31	+1.0
3,921,534	-		PFR28_03412	0.44	-0.4
3,921,577	+		PFR28_03412	0.48	-0.4
3,922,036	+				-0.2
3,922,036	+				-1.6
3,922,037	-				-1.0
3,922,135	+				-1.6
3,922,135	+				-1.4
3,922,135	+				+0.4
3,922,135	+				-2.1
3,922,136	-				-0.0
3,922,136	-				-0.6
3,922,166	+				-0.2
3,922,167	-				-3.0
3,922,167	-				-2.7
3,922,167	-				-2.0
3,922,231	+		PFR28_03413	0.16	-1.0
3,922,232	-		PFR28_03413	0.16	-1.0
3,922,561	+		PFR28_03413	0.70	-1.4
3,922,561	+		PFR28_03413	0.70	-0.9
3,922,561	+		PFR28_03413	0.70	-2.2
3,922,562	-		PFR28_03413	0.70	-3.1
3,922,566	+		PFR28_03413	0.71	-0.0
3,922,566	+		PFR28_03413	0.71	+1.2
3,922,567	-		PFR28_03413	0.71	-1.0
3,922,567	-		PFR28_03413	0.71	-1.2
3,922,599	-		PFR28_03413	0.76	-0.4
3,922,680	+		PFR28_03413	0.90	+0.4
3,922,680	+		PFR28_03413	0.90	-1.1
3,922,681	-		PFR28_03413	0.90	-0.6
3,922,681	-		PFR28_03413	0.90	-0.2
3,922,681	-		PFR28_03413	0.90	-0.0
3,922,854	+				-0.2
3,922,854	+				-0.6
3,922,855	-				+0.4
3,922,943	+		PFR28_03414	0.17	+0.4
3,922,944	-		PFR28_03414	0.17	-1.4
3,923,205	+		PFR28_03414	0.66	-2.2
3,923,205	+		PFR28_03414	0.66	-1.6
3,923,298	+		PFR28_03414	0.84	+0.2
3,923,298	+		PFR28_03414	0.84	-0.6
3,923,298	+		PFR28_03414	0.84	-0.4
3,923,298	+		PFR28_03414	0.84	-0.8
3,923,299	-		PFR28_03414	0.84	-0.6
3,923,299	-		PFR28_03414	0.84	+0.2
3,923,299	-		PFR28_03414	0.84	+1.0
3,923,372	+				-0.0
3,923,372	+				-2.0
3,923,372	+				-3.3
3,923,372	+				-2.1
3,923,372	+				-0.9
3,923,372	+				-0.0
3,923,373	-				+2.4
3,923,373	-				-0.1
3,923,380	+				-1.3
3,923,380	+				-0.4
3,923,416	-				-0.1
3,923,416	-				+0.2
3,923,474	-				+0.3
3,923,474	-				-0.0
3,923,474	-				+1.0
3,923,480	-				-0.0
3,923,580	-				-0.2
3,923,580	-				-0.0