Strain Fitness in Pseudomonas sp. RS175 around PFR28_03218

Experiment: trans-aconitic (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	trans-aconitic (C) 5 mM
3,725,719	+		PFR28_03217	0.42	-1.8
3,725,719	+		PFR28_03217	0.42	-1.5
3,725,720	-		PFR28_03217	0.42	-0.0
3,725,720	-		PFR28_03217	0.42	-1.6
3,725,959	+		PFR28_03217	0.65	-2.3
3,725,959	+		PFR28_03217	0.65	+1.5
3,725,960	-		PFR28_03217	0.65	-2.3
3,725,960	-		PFR28_03217	0.65	-0.8
3,725,960	-		PFR28_03217	0.65	-1.5
3,726,477	+		PFR28_03218	0.22	-1.3
3,726,674	+		PFR28_03218	0.51	-2.7
3,726,699	+		PFR28_03218	0.55	-2.3
3,726,699	+		PFR28_03218	0.55	-2.6
3,726,699	+		PFR28_03218	0.55	-2.4
3,726,699	+		PFR28_03218	0.55	-1.9
3,726,699	+		PFR28_03218	0.55	-1.5
3,726,700	-		PFR28_03218	0.55	-3.2
3,726,805	+		PFR28_03218	0.71	-2.9
3,726,814	+		PFR28_03218	0.73	-2.7
3,726,814	+		PFR28_03218	0.73	-2.0
3,726,815	-		PFR28_03218	0.73	-2.3
3,726,815	-		PFR28_03218	0.73	-3.0
3,726,824	-		PFR28_03218	0.74	-2.7
3,726,885	+		PFR28_03218	0.83	-2.4
3,726,886	-		PFR28_03218	0.83	-1.6
3,726,990	+				-0.6
3,726,993	+				+1.7
3,726,993	+				+0.4
3,726,994	-				+0.8
3,726,994	-				-1.9
3,727,003	+				+0.1
3,727,003	+				-2.5
3,727,003	+				-0.5
3,727,004	-				-0.7
3,727,004	-				-0.2
3,727,004	-				-0.6
3,727,088	+		PFR28_03219	0.12	-0.8
3,727,088	+		PFR28_03219	0.12	-0.8
3,727,088	+		PFR28_03219	0.12	-0.2
3,727,088	+		PFR28_03219	0.12	-0.4
3,727,089	-		PFR28_03219	0.12	-1.5
3,727,089	-		PFR28_03219	0.12	+0.3
3,727,256	+		PFR28_03219	0.35	-1.0
3,727,257	-		PFR28_03219	0.35	-0.4
3,727,257	-		PFR28_03219	0.35	-0.2
3,727,387	+		PFR28_03219	0.54	-1.2
3,727,388	-		PFR28_03219	0.54	-0.2
3,727,397	+		PFR28_03219	0.55	-0.8
3,727,397	+		PFR28_03219	0.55	-0.6
3,727,397	+		PFR28_03219	0.55	-0.2
3,727,398	-		PFR28_03219	0.55	-0.1
3,727,398	-		PFR28_03219	0.55	-0.8
3,727,398	-		PFR28_03219	0.55	-1.0
3,727,398	-		PFR28_03219	0.55	-0.5
3,727,448	+		PFR28_03219	0.62	+0.2
3,727,449	-		PFR28_03219	0.62	-0.1
3,727,449	-		PFR28_03219	0.62	+0.2
3,727,449	-		PFR28_03219	0.62	-0.7
3,727,449	-		PFR28_03219	0.62	-1.4
3,727,449	-		PFR28_03219	0.62	-0.7
3,727,481	+		PFR28_03219	0.67	-1.0
3,727,481	+		PFR28_03219	0.67	-0.2
3,727,481	+		PFR28_03219	0.67	-0.8
3,727,481	+		PFR28_03219	0.67	-0.8
3,727,481	+		PFR28_03219	0.67	-0.7
3,727,481	+		PFR28_03219	0.67	+0.4
3,727,481	+		PFR28_03219	0.67	-0.6
3,727,481	+		PFR28_03219	0.67	-0.4
3,727,481	+		PFR28_03219	0.67	+1.1
3,727,482	-		PFR28_03219	0.67	-0.7
3,727,482	-		PFR28_03219	0.67	-0.9
3,727,482	-		PFR28_03219	0.67	-1.1
3,727,482	-		PFR28_03219	0.67	-0.3
3,727,482	-		PFR28_03219	0.67	+0.1
3,727,482	-		PFR28_03219	0.67	-0.1
3,727,482	-		PFR28_03219	0.67	-0.2
3,727,591	-		PFR28_03219	0.82	-1.1
3,727,616	+		PFR28_03219	0.86	+0.1
3,727,616	+		PFR28_03219	0.86	-0.5
3,727,616	+		PFR28_03219	0.86	-0.6
3,727,617	-		PFR28_03219	0.86	-0.4
3,727,626	+		PFR28_03219	0.87	-1.1
3,727,626	+		PFR28_03219	0.87	-0.3
3,727,661	+				+1.5
3,727,661	+				-0.4
3,727,661	+				-0.0
3,727,661	+				-0.0
3,727,662	-				-0.5
3,727,662	-				-0.6
3,727,662	-				-0.4
3,727,662	-				-0.8
3,727,662	-				+0.0
3,727,880	+				+0.1
3,727,881	-				-0.3
3,727,938	+				-1.1
3,727,986	+				+0.7
3,727,986	+				-0.3
3,727,986	+				+0.9
3,727,987	-				+0.4
3,727,987	-				-0.0
3,727,987	-				-0.5