Strain Fitness in Pseudomonas sp. RS175 around PFR28_03205

Experiment: trans-aconitic (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	trans-aconitic (C) 5 mM
3,712,291	+		PFR28_03204	0.37	-1.9
3,712,291	+		PFR28_03204	0.37	-0.7
3,712,292	-		PFR28_03204	0.37	+0.7
3,712,531	+		PFR28_03204	0.54	-1.3
3,712,531	+		PFR28_03204	0.54	-0.6
3,712,532	-		PFR28_03204	0.54	-2.2
3,712,532	-		PFR28_03204	0.54	-1.1
3,712,665	+		PFR28_03204	0.63	-1.0
3,712,665	+		PFR28_03204	0.63	-0.1
3,712,666	-		PFR28_03204	0.63	-0.6
3,712,831	+		PFR28_03204	0.74	-0.9
3,712,863	+		PFR28_03204	0.76	-0.3
3,712,888	+		PFR28_03204	0.78	+0.0
3,712,888	+		PFR28_03204	0.78	-1.6
3,712,889	-		PFR28_03204	0.78	-0.1
3,712,889	-		PFR28_03204	0.78	-1.9
3,712,889	-		PFR28_03204	0.78	+0.6
3,713,157	-				+0.3
3,713,220	+				-0.7
3,713,221	-				-0.9
3,713,221	-				+0.5
3,713,583	-		PFR28_03205	0.38	-0.8
3,713,583	-		PFR28_03205	0.38	-1.3
3,713,583	-		PFR28_03205	0.38	+0.4
3,713,583	-		PFR28_03205	0.38	-0.8
3,713,583	-		PFR28_03205	0.38	-0.6
3,713,583	-		PFR28_03205	0.38	-0.2
3,713,871	+		PFR28_03205	0.67	-0.5
3,713,871	+		PFR28_03205	0.67	-0.5
3,713,871	+		PFR28_03205	0.67	+0.9
3,713,871	+		PFR28_03205	0.67	-0.2
3,713,872	-		PFR28_03205	0.68	-1.5
3,713,872	-		PFR28_03205	0.68	-1.3
3,713,872	-		PFR28_03205	0.68	-0.9
3,713,908	-		PFR28_03205	0.71	-1.6
3,714,010	-		PFR28_03205	0.81	-1.1
3,714,010	-		PFR28_03205	0.81	-0.6
3,714,012	+		PFR28_03205	0.82	-0.5
3,714,012	+		PFR28_03205	0.82	-1.0
3,714,150	+				-1.3
3,714,193	+				-2.2
3,714,193	+				-1.5
3,714,194	-				-0.5
3,714,194	-				-0.4
3,714,194	-				-0.5
3,714,194	-				-0.4
3,714,194	-				-1.5
3,714,234	+				+0.2
3,714,235	-				-0.4
3,714,331	+		PFR28_03206	0.16	-0.1
3,714,332	-		PFR28_03206	0.16	-0.6
3,714,469	+		PFR28_03206	0.31	-0.3
3,714,470	-		PFR28_03206	0.31	-0.8
3,714,470	-		PFR28_03206	0.31	-0.0
3,714,470	-		PFR28_03206	0.31	+0.3
3,714,470	-		PFR28_03206	0.31	-0.5
3,714,470	-		PFR28_03206	0.31	-1.3
3,714,499	+		PFR28_03206	0.34	-0.8
3,714,499	+		PFR28_03206	0.34	-0.3
3,714,499	+		PFR28_03206	0.34	-0.5
3,714,499	+		PFR28_03206	0.34	-0.2
3,714,499	+		PFR28_03206	0.34	-0.9
3,714,499	+		PFR28_03206	0.34	-1.6
3,714,499	+		PFR28_03206	0.34	-0.6
3,714,500	-		PFR28_03206	0.35	+0.6
3,714,500	-		PFR28_03206	0.35	-0.4
3,714,500	-		PFR28_03206	0.35	-1.3
3,714,500	-		PFR28_03206	0.35	-1.6
3,714,500	-		PFR28_03206	0.35	+0.7
3,714,500	-		PFR28_03206	0.35	-1.6
3,714,500	-		PFR28_03206	0.35	-0.1
3,714,500	-		PFR28_03206	0.35	+0.4
3,714,500	-		PFR28_03206	0.35	+0.6
3,714,584	+		PFR28_03206	0.44	-1.9
3,714,584	+		PFR28_03206	0.44	+0.5
3,714,599	-		PFR28_03206	0.45	-2.4
3,714,599	-		PFR28_03206	0.45	-1.1
3,714,599	-		PFR28_03206	0.45	-0.1
3,714,742	+		PFR28_03206	0.61	-0.0
3,714,743	-		PFR28_03206	0.61	-0.3
3,714,841	+		PFR28_03206	0.72	+0.7
3,714,841	+		PFR28_03206	0.72	+0.8
3,714,842	-		PFR28_03206	0.72	+0.4
3,714,842	-		PFR28_03206	0.72	-0.5
3,715,119	+				-0.7
3,715,183	-		PFR28_03207	0.14	-0.1