Strain Fitness in Pseudomonas sp. RS175 around PFR28_03182

Experiment: trans-aconitic (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	trans-aconitic (C) 5 mM
3,687,699	-				+0.6
3,687,700	+				-0.1
3,687,700	+				+1.9
3,687,700	+				+1.7
3,687,701	-				-0.4
3,687,746	-				-0.7
3,687,843	-				+0.6
3,687,843	-				-0.5
3,687,899	+		PFR28_03178	0.71	+2.1
3,687,899	+		PFR28_03178	0.71	-1.3
3,687,899	+		PFR28_03178	0.71	+1.1
3,687,899	+		PFR28_03178	0.71	+0.5
3,687,912	+		PFR28_03178	0.88	-0.1
3,687,912	+		PFR28_03178	0.88	-0.5
3,687,924	+				+0.5
3,688,005	+		PFR28_03179	0.88	+0.5
3,688,005	+		PFR28_03179	0.88	+0.4
3,688,186	-				-0.1
3,688,186	-				-0.2
3,688,186	-				+0.1
3,688,465	+				-0.0
3,688,465	+				+0.1
3,688,465	+				-0.2
3,688,484	+				+0.0
3,688,499	+				-0.2
3,688,499	+				-1.5
3,688,499	+				+0.2
3,688,499	+				+0.9
3,688,499	+				-1.2
3,688,499	+				+0.3
3,688,499	+				+1.0
3,688,500	-				-0.9
3,688,500	-				-0.2
3,688,500	-				+0.5
3,688,500	-				+0.8
3,688,500	-				-0.6
3,688,500	-				+1.5
3,688,500	-				-0.2
3,688,500	-				-0.7
3,688,500	-				+1.1
3,688,501	+				-2.3
3,688,501	+				+0.1
3,688,501	+				-1.1
3,688,540	+				-2.1
3,688,540	+				-2.3
3,688,540	+				+1.5
3,688,540	+				-0.5
3,688,540	+				-0.4
3,688,540	+				-0.6
3,688,540	+				-0.9
3,688,540	+				-1.5
3,688,540	+				+0.2
3,688,541	-				-1.3
3,688,541	-				+1.3
3,688,541	-				-0.1
3,688,541	-				-0.6
3,688,541	-				-1.5
3,688,545	-				-1.2
3,688,643	+		PFR28_03182	0.13	-1.3
3,688,643	+		PFR28_03182	0.13	+1.9
3,688,643	+		PFR28_03182	0.13	-0.1
3,688,643	+		PFR28_03182	0.13	-3.8
3,688,644	-		PFR28_03182	0.13	+0.2
3,688,644	-		PFR28_03182	0.13	-0.8
3,688,644	-		PFR28_03182	0.13	-0.3
3,688,644	-		PFR28_03182	0.13	-0.3
3,688,644	-		PFR28_03182	0.13	-2.1
3,688,817	+		PFR28_03182	0.32	-1.1
3,688,818	-		PFR28_03182	0.32	-0.2
3,689,438	+				+0.2
3,689,438	+				-0.1
3,689,439	-				-0.6
3,689,439	-				+0.5
3,689,439	-				+0.8
3,689,453	+				+0.9
3,689,503	+				-1.7
3,689,503	+				+0.6
3,689,503	+				-0.9
3,689,504	-				-0.4
3,689,504	-				-0.7
3,689,504	-				-0.9
3,689,504	-				-0.6
3,689,504	-				+0.2
3,689,504	-				+2.3
3,689,504	-				+0.9
3,689,552	+				+0.4
3,689,553	-				+1.1
3,689,568	+				+1.1
3,689,568	+				-0.5
3,689,571	+				+0.1
3,689,571	+				-1.6
3,689,571	+				+0.0
3,689,571	+				+0.1
3,689,571	+				+0.9
3,689,572	-				+0.0
3,689,572	-				-0.3
3,689,572	-				-0.2
3,689,572	-				-0.8
3,689,572	-				-0.5
3,689,622	+				-0.1
3,689,622	+				+0.9
3,689,623	-				+0.3
3,689,623	-				-0.7
3,689,623	-				+0.9
3,689,623	-				-0.3
3,689,632	+				-1.5
3,689,691	+		PFR28_03183	0.11	+0.0
3,689,691	+		PFR28_03183	0.11	-0.2
3,689,692	-		PFR28_03183	0.11	+0.5
3,690,134	+		PFR28_03183	0.57	+1.8
3,690,159	-		PFR28_03183	0.59	+0.4
3,690,159	-		PFR28_03183	0.59	-1.1
3,690,159	-		PFR28_03183	0.59	+0.7
3,690,185	+		PFR28_03183	0.62	-0.2
3,690,185	+		PFR28_03183	0.62	-0.4
3,690,264	+		PFR28_03183	0.70	+1.3
3,690,304	+		PFR28_03183	0.74	+0.2
3,690,305	-		PFR28_03183	0.74	+0.1