Strain Fitness in Pseudomonas sp. RS175 around PFR28_02484

Experiment: trans-aconitic (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	trans-aconitic (C) 5 mM
2,960,093	-		PFR28_02483	0.60	-0.1
2,960,114	-		PFR28_02483	0.61	-1.4
2,960,115	+		PFR28_02483	0.61	+1.3
2,960,115	+		PFR28_02483	0.61	-0.4
2,960,115	+		PFR28_02483	0.61	+0.6
2,960,115	+		PFR28_02483	0.61	-0.4
2,960,115	+		PFR28_02483	0.61	-0.3
2,960,115	+		PFR28_02483	0.61	-0.2
2,960,115	+		PFR28_02483	0.61	-0.1
2,960,115	+		PFR28_02483	0.61	+0.5
2,960,115	+		PFR28_02483	0.61	+0.8
2,960,116	-		PFR28_02483	0.61	-2.4
2,960,116	-		PFR28_02483	0.61	-1.7
2,960,116	-		PFR28_02483	0.61	+0.1
2,960,242	+		PFR28_02483	0.71	-0.2
2,960,242	+		PFR28_02483	0.71	-0.4
2,960,349	+		PFR28_02483	0.78	-0.9
2,960,349	+		PFR28_02483	0.78	+0.6
2,960,349	+		PFR28_02483	0.78	+1.4
2,960,349	+		PFR28_02483	0.78	-0.8
2,960,350	-		PFR28_02483	0.78	+0.6
2,960,350	-		PFR28_02483	0.78	+0.2
2,960,350	-		PFR28_02483	0.78	+0.1
2,960,350	-		PFR28_02483	0.78	+0.2
2,960,353	+		PFR28_02483	0.79	-0.3
2,960,353	+		PFR28_02483	0.79	-1.8
2,960,353	+		PFR28_02483	0.79	+2.0
2,960,353	+		PFR28_02483	0.79	-0.1
2,960,353	+		PFR28_02483	0.79	+0.6
2,960,353	+		PFR28_02483	0.79	+0.5
2,960,353	+		PFR28_02483	0.79	-1.6
2,960,353	+		PFR28_02483	0.79	+1.1
2,960,354	-		PFR28_02483	0.79	+1.4
2,960,354	-		PFR28_02483	0.79	-0.3
2,960,354	-		PFR28_02483	0.79	+0.8
2,960,354	-		PFR28_02483	0.79	+1.4
2,960,354	-		PFR28_02483	0.79	-0.6
2,960,478	+		PFR28_02483	0.88	+1.6
2,960,619	+				+1.1
2,960,619	+				+1.4
2,960,619	+				-0.4
2,960,619	+				+0.8
2,960,619	+				-0.8
2,960,619	+				-0.4
2,960,619	+				+0.1
2,960,619	+				+0.8
2,960,619	+				-0.7
2,960,619	+				-0.2
2,960,619	+				-0.5
2,960,620	-				+0.7
2,960,620	-				+0.0
2,960,620	-				-0.4
2,960,620	-				-0.8
2,960,620	-				-0.6
2,960,620	-				+0.0
2,960,620	-				+1.1
2,960,620	-				-0.8
2,960,620	-				+0.1
2,960,635	-				-1.0
2,960,635	-				-0.5
2,960,706	+				-0.5
2,960,706	+				-0.4
2,960,706	+				+0.1
2,960,706	+				+0.0
2,960,797	+				-2.0
2,960,798	-				-1.0
2,960,798	-				+0.8
2,960,798	-				-0.1
2,960,897	+				-0.5
2,960,945	+				-0.2
2,960,945	+				+0.0
2,960,945	+				-0.6
2,960,945	+				-0.2
2,960,946	-				-0.2
2,960,946	-				+0.4
2,960,946	-				+0.6
2,961,000	+				+0.4
2,961,000	+				+0.5
2,961,000	+				-0.5
2,961,000	+				-0.2
2,961,000	+				-0.4
2,961,001	-				+0.6
2,961,001	-				+0.2
2,961,018	+				+0.9
2,961,018	+				-1.3
2,961,019	-				-0.2
2,961,019	-				-0.8
2,961,019	-				+0.5
2,961,053	-				-1.1
2,961,054	+				-0.7
2,961,054	+				-0.2
2,961,054	+				-2.5
2,961,054	+				-1.7
2,961,055	-				+0.8
2,961,055	-				-0.9
2,961,055	-				-0.3
2,961,055	-				-1.3
2,961,099	+		PFR28_02484	0.12	+0.5
2,961,100	-		PFR28_02484	0.12	-1.3
2,961,100	-		PFR28_02484	0.12	-1.7
2,961,100	-		PFR28_02484	0.12	-0.6
2,961,100	-		PFR28_02484	0.12	-0.7
2,961,100	-		PFR28_02484	0.12	-0.8
2,961,100	-		PFR28_02484	0.12	-1.3
2,961,199	+		PFR28_02484	0.24	-1.0
2,961,216	+		PFR28_02484	0.26	-1.7
2,961,216	+		PFR28_02484	0.26	-1.3
2,961,216	+		PFR28_02484	0.26	+0.5
2,961,216	+		PFR28_02484	0.26	-0.3
2,961,217	-		PFR28_02484	0.26	-0.6
2,961,217	-		PFR28_02484	0.26	-1.2
2,961,288	+		PFR28_02484	0.35	-0.6
2,961,288	+		PFR28_02484	0.35	-0.4
2,961,289	-		PFR28_02484	0.35	-1.0
2,961,289	-		PFR28_02484	0.35	-1.9
2,961,289	-		PFR28_02484	0.35	-1.6
2,961,327	+		PFR28_02484	0.39	-1.1
2,961,327	+		PFR28_02484	0.39	-1.2
2,961,327	+		PFR28_02484	0.39	-1.8
2,961,327	+		PFR28_02484	0.39	-0.3
2,961,327	+		PFR28_02484	0.39	-2.1
2,961,327	+		PFR28_02484	0.39	+0.2
2,961,328	-		PFR28_02484	0.40	-1.7
2,961,328	-		PFR28_02484	0.40	-0.6
2,961,328	-		PFR28_02484	0.40	+0.0
2,961,390	+		PFR28_02484	0.47	-1.2
2,961,390	+		PFR28_02484	0.47	+0.2
2,961,390	+		PFR28_02484	0.47	-1.3
2,961,540	+		PFR28_02484	0.65	-0.8
2,961,541	-		PFR28_02484	0.65	-0.4
2,961,585	+		PFR28_02484	0.70	-1.2
2,961,586	-		PFR28_02484	0.70	-0.1
2,961,586	-		PFR28_02484	0.70	+0.1
2,961,627	+		PFR28_02484	0.75	+0.3
2,961,628	-		PFR28_02484	0.75	-0.2
2,961,628	-		PFR28_02484	0.75	-1.2
2,961,775	+				-0.8
2,961,797	-				-1.4
2,961,835	+				-0.7
2,961,835	+				+0.7
2,961,835	+				-1.8
2,961,835	+				-1.1
2,961,835	+				-1.4
2,961,835	+				-1.1
2,961,835	+				-1.3
2,961,836	-				+1.4
2,961,836	-				+0.7
2,961,836	-				+0.1
2,961,836	-				-0.9
2,961,836	-				+0.5
2,961,836	-				+1.2
2,961,847	+				+0.4
2,961,847	+				+0.6
2,961,847	+				-0.9
2,961,847	+				+1.2
2,961,847	+				+0.1
2,961,848	-				+0.6
2,961,848	-				-1.0
2,961,848	-				+0.4
2,961,848	-				+0.3
2,961,848	-				-0.4
2,961,860	+				+0.3
2,961,861	-				+0.5
2,961,883	-				+0.9
2,961,893	+				+0.2
2,961,902	+				+0.9
2,961,902	+				+0.1
2,961,902	+				+0.9
2,961,902	+				+0.9
2,961,902	+				+1.0
2,961,902	+				+1.2
2,961,902	+				+1.0
2,961,902	+				+1.8
2,961,902	+				+1.6
2,961,902	+				+0.9
2,961,902	+				+2.5
2,961,902	+				+0.9
2,961,902	+				-0.0
2,961,902	+				+1.2
2,961,902	+				+0.8
2,961,902	+				+0.9
2,961,902	+				+1.3
2,961,903	-				-0.1
2,961,903	-				-1.3
2,961,903	-				+0.2
2,961,903	-				+0.1
2,961,903	-				+1.4
2,961,903	-				-0.6
2,961,903	-				-0.2
2,961,903	-				-0.4
2,961,903	-				+0.6
2,961,903	-				-0.8
2,961,903	-				+0.2
2,961,903	-				-0.2
2,961,903	-				-0.1
2,961,903	-				-1.4
2,961,936	-				-0.1
2,961,944	-				+0.4
2,961,956	-				+0.4
2,961,997	+				-0.4
2,961,997	+				-0.3
2,962,032	+				+0.2
2,962,032	+				+0.6
2,962,032	+				+0.4
2,962,032	+				+1.2
2,962,033	-				+0.6
2,962,033	-				-0.3
2,962,033	-				-1.2
2,962,033	-				+0.2
2,962,033	-				-0.0
2,962,033	-				+1.0
2,962,033	-				+0.5
2,962,033	-				+0.4
2,962,141	+		PFR28_02485	0.34	+0.1
2,962,141	+		PFR28_02485	0.34	+0.1
2,962,141	+		PFR28_02485	0.34	-0.2
2,962,142	-		PFR28_02485	0.34	+0.3
2,962,142	-		PFR28_02485	0.34	-0.4
2,962,551	+		PFR28_02486	0.67	-0.1
2,962,552	-		PFR28_02486	0.67	-0.3
2,962,666	+				-1.2
2,962,666	+				-0.2
2,962,667	-				-0.3
2,962,667	-				+0.5
2,962,681	-				+0.5
2,962,755	+				-0.2
2,962,755	+				-1.0
2,962,755	+				-1.3
2,962,756	-				+0.2
2,962,756	-				-0.1
2,962,756	-				-0.2
2,962,756	-				+0.1
2,962,803	-				+1.1