Strain Fitness in Pseudomonas sp. RS175 around PFR28_01425

Experiment: trans-aconitic (C) 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_01424 and PFR28_01425 are separated by 244 nucleotidesPFR28_01425 and PFR28_01426 are separated by 10 nucleotidesPFR28_01426 and PFR28_01427 are separated by 31 nucleotidesPFR28_01427 and PFR28_01428 are separated by 4 nucleotides PFR28_01424: PFR28_01424 - Cyclic di-GMP phosphodiesterase, at 1,549,129 to 1,550,082 _01424 PFR28_01425: PFR28_01425 - hypothetical protein, at 1,550,327 to 1,551,502 _01425 PFR28_01426: PFR28_01426 - Chemotaxis protein CheY, at 1,551,513 to 1,551,881 _01426 PFR28_01427: PFR28_01427 - hypothetical protein, at 1,551,913 to 1,552,230 _01427 PFR28_01428: PFR28_01428 - Chemotaxis protein CheA, at 1,552,235 to 1,554,376 _01428 Position (kb) 1550 1551 1552Strain fitness (log2 ratio) -2 -1 0 1 2at 1549.327 kb on + strand, within PFR28_01424at 1549.327 kb on + strand, within PFR28_01424at 1549.327 kb on + strand, within PFR28_01424at 1549.328 kb on - strand, within PFR28_01424at 1549.329 kb on + strand, within PFR28_01424at 1549.329 kb on + strand, within PFR28_01424at 1549.329 kb on + strand, within PFR28_01424at 1549.329 kb on + strand, within PFR28_01424at 1549.329 kb on + strand, within PFR28_01424at 1549.329 kb on + strand, within PFR28_01424at 1549.329 kb on + strand, within PFR28_01424at 1549.329 kb on + strand, within PFR28_01424at 1549.329 kb on + strand, within PFR28_01424at 1549.330 kb on - strand, within PFR28_01424at 1549.330 kb on - strand, within PFR28_01424at 1549.330 kb on - strand, within PFR28_01424at 1549.330 kb on - strand, within PFR28_01424at 1549.330 kb on - strand, within PFR28_01424at 1549.333 kb on + strand, within PFR28_01424at 1549.333 kb on + strand, within PFR28_01424at 1549.333 kb on + strand, within PFR28_01424at 1549.333 kb on + strand, within PFR28_01424at 1549.333 kb on + strand, within PFR28_01424at 1549.333 kb on + strand, within PFR28_01424at 1549.333 kb on + strand, within PFR28_01424at 1549.333 kb on + strand, within PFR28_01424at 1549.333 kb on + strand, within PFR28_01424at 1549.333 kb on + strand, within PFR28_01424at 1549.333 kb on + strand, within PFR28_01424at 1549.333 kb on + strand, within PFR28_01424at 1549.333 kb on + strand, within PFR28_01424at 1549.333 kb on + strand, within PFR28_01424at 1549.333 kb on + strand, within PFR28_01424at 1549.333 kb on + strand, within PFR28_01424at 1549.333 kb on + strand, within PFR28_01424at 1549.334 kb on - strand, within PFR28_01424at 1549.334 kb on - strand, within PFR28_01424at 1549.334 kb on - strand, within PFR28_01424at 1549.334 kb on - strand, within PFR28_01424at 1549.334 kb on - strand, within PFR28_01424at 1549.334 kb on - strand, within PFR28_01424at 1549.334 kb on - strand, within PFR28_01424at 1549.334 kb on - strand, within PFR28_01424at 1549.334 kb on - strand, within PFR28_01424at 1549.334 kb on - strand, within PFR28_01424at 1549.334 kb on - strand, within PFR28_01424at 1549.334 kb on - strand, within PFR28_01424at 1549.334 kb on - strand, within PFR28_01424at 1549.334 kb on - strand, within PFR28_01424at 1549.334 kb on - strand, within PFR28_01424at 1549.334 kb on - strand, within PFR28_01424at 1549.334 kb on - strand, within PFR28_01424at 1549.334 kb on - strand, within PFR28_01424at 1549.334 kb on - strand, within PFR28_01424at 1549.334 kb on - strand, within PFR28_01424at 1549.392 kb on - strand, within PFR28_01424at 1549.406 kb on + strand, within PFR28_01424at 1549.407 kb on - strand, within PFR28_01424at 1549.561 kb on + strand, within PFR28_01424at 1549.562 kb on - strand, within PFR28_01424at 1549.633 kb on - strand, within PFR28_01424at 1549.690 kb on + strand, within PFR28_01424at 1549.690 kb on + strand, within PFR28_01424at 1549.690 kb on + strand, within PFR28_01424at 1549.690 kb on + strand, within PFR28_01424at 1549.690 kb on + strand, within PFR28_01424at 1549.691 kb on - strand, within PFR28_01424at 1549.818 kb on + strand, within PFR28_01424at 1549.818 kb on + strand, within PFR28_01424at 1549.818 kb on + strand, within PFR28_01424at 1549.818 kb on + strand, within PFR28_01424at 1549.818 kb on + strand, within PFR28_01424at 1549.818 kb on + strand, within PFR28_01424at 1549.819 kb on - strand, within PFR28_01424at 1549.819 kb on - strand, within PFR28_01424at 1549.819 kb on - strand, within PFR28_01424at 1549.819 kb on - strand, within PFR28_01424at 1549.819 kb on - strand, within PFR28_01424at 1549.819 kb on - strand, within PFR28_01424at 1549.841 kb on + strand, within PFR28_01424at 1549.989 kb on - strandat 1550.187 kb on - strandat 1550.193 kb on - strandat 1550.225 kb on + strandat 1550.340 kb on + strandat 1550.500 kb on - strand, within PFR28_01425at 1550.500 kb on - strand, within PFR28_01425at 1551.176 kb on - strand, within PFR28_01425at 1551.243 kb on + strand, within PFR28_01425at 1551.422 kb on + strandat 1551.422 kb on + strandat 1551.973 kb on + strand, within PFR28_01427at 1551.973 kb on + strand, within PFR28_01427at 1551.974 kb on - strand, within PFR28_01427at 1551.974 kb on - strand, within PFR28_01427at 1552.082 kb on + strand, within PFR28_01427at 1552.083 kb on - strand, within PFR28_01427at 1552.266 kb on + strandat 1552.456 kb on - strand, within PFR28_01428

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Per-strain Table

Position Strand Gene LocusTag Fraction trans-aconitic (C) 5 mM
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1,549,327 + PFR28_01424 0.21 +0.4
1,549,327 + PFR28_01424 0.21 +0.6
1,549,327 + PFR28_01424 0.21 -0.5
1,549,328 - PFR28_01424 0.21 +0.5
1,549,329 + PFR28_01424 0.21 +0.5
1,549,329 + PFR28_01424 0.21 -0.4
1,549,329 + PFR28_01424 0.21 -1.1
1,549,329 + PFR28_01424 0.21 -1.4
1,549,329 + PFR28_01424 0.21 +0.2
1,549,329 + PFR28_01424 0.21 -1.0
1,549,329 + PFR28_01424 0.21 +0.3
1,549,329 + PFR28_01424 0.21 +0.2
1,549,329 + PFR28_01424 0.21 +0.1
1,549,330 - PFR28_01424 0.21 -0.8
1,549,330 - PFR28_01424 0.21 -0.2
1,549,330 - PFR28_01424 0.21 -0.3
1,549,330 - PFR28_01424 0.21 -0.2
1,549,330 - PFR28_01424 0.21 -0.2
1,549,333 + PFR28_01424 0.21 +0.5
1,549,333 + PFR28_01424 0.21 -0.4
1,549,333 + PFR28_01424 0.21 +1.3
1,549,333 + PFR28_01424 0.21 +0.2
1,549,333 + PFR28_01424 0.21 -0.3
1,549,333 + PFR28_01424 0.21 -0.0
1,549,333 + PFR28_01424 0.21 +0.3
1,549,333 + PFR28_01424 0.21 -0.1
1,549,333 + PFR28_01424 0.21 +0.3
1,549,333 + PFR28_01424 0.21 +0.2
1,549,333 + PFR28_01424 0.21 -0.6
1,549,333 + PFR28_01424 0.21 -0.7
1,549,333 + PFR28_01424 0.21 +0.0
1,549,333 + PFR28_01424 0.21 -0.2
1,549,333 + PFR28_01424 0.21 -0.5
1,549,333 + PFR28_01424 0.21 -0.5
1,549,333 + PFR28_01424 0.21 +0.8
1,549,334 - PFR28_01424 0.21 -0.0
1,549,334 - PFR28_01424 0.21 +0.5
1,549,334 - PFR28_01424 0.21 +0.1
1,549,334 - PFR28_01424 0.21 +0.4
1,549,334 - PFR28_01424 0.21 +1.8
1,549,334 - PFR28_01424 0.21 -0.4
1,549,334 - PFR28_01424 0.21 -0.5
1,549,334 - PFR28_01424 0.21 +0.3
1,549,334 - PFR28_01424 0.21 +0.1
1,549,334 - PFR28_01424 0.21 -0.3
1,549,334 - PFR28_01424 0.21 +0.1
1,549,334 - PFR28_01424 0.21 +1.2
1,549,334 - PFR28_01424 0.21 +0.0
1,549,334 - PFR28_01424 0.21 -0.1
1,549,334 - PFR28_01424 0.21 +1.3
1,549,334 - PFR28_01424 0.21 -0.3
1,549,334 - PFR28_01424 0.21 -0.0
1,549,334 - PFR28_01424 0.21 +0.1
1,549,334 - PFR28_01424 0.21 +0.3
1,549,334 - PFR28_01424 0.21 -0.6
1,549,392 - PFR28_01424 0.28 +0.8
1,549,406 + PFR28_01424 0.29 +0.7
1,549,407 - PFR28_01424 0.29 -0.1
1,549,561 + PFR28_01424 0.45 +0.5
1,549,562 - PFR28_01424 0.45 +0.1
1,549,633 - PFR28_01424 0.53 +0.4
1,549,690 + PFR28_01424 0.59 +0.9
1,549,690 + PFR28_01424 0.59 -1.9
1,549,690 + PFR28_01424 0.59 +0.2
1,549,690 + PFR28_01424 0.59 +0.7
1,549,690 + PFR28_01424 0.59 -0.8
1,549,691 - PFR28_01424 0.59 -1.0
1,549,818 + PFR28_01424 0.72 +0.6
1,549,818 + PFR28_01424 0.72 +1.9
1,549,818 + PFR28_01424 0.72 -0.5
1,549,818 + PFR28_01424 0.72 -1.5
1,549,818 + PFR28_01424 0.72 -2.7
1,549,818 + PFR28_01424 0.72 -0.1
1,549,819 - PFR28_01424 0.72 +0.1
1,549,819 - PFR28_01424 0.72 +0.1
1,549,819 - PFR28_01424 0.72 +0.0
1,549,819 - PFR28_01424 0.72 +0.8
1,549,819 - PFR28_01424 0.72 -0.8
1,549,819 - PFR28_01424 0.72 +0.1
1,549,841 + PFR28_01424 0.75 +0.7
1,549,989 - +0.1
1,550,187 - +0.5
1,550,193 - -1.2
1,550,225 + +0.7
1,550,340 + -0.2
1,550,500 - PFR28_01425 0.15 -1.0
1,550,500 - PFR28_01425 0.15 -0.2
1,551,176 - PFR28_01425 0.72 -1.9
1,551,243 + PFR28_01425 0.78 -0.9
1,551,422 + +0.7
1,551,422 + -0.5
1,551,973 + PFR28_01427 0.19 +0.9
1,551,973 + PFR28_01427 0.19 +0.9
1,551,974 - PFR28_01427 0.19 -0.1
1,551,974 - PFR28_01427 0.19 +0.1
1,552,082 + PFR28_01427 0.53 +0.9
1,552,083 - PFR28_01427 0.53 -2.1
1,552,266 + -0.0
1,552,456 - PFR28_01428 0.10 +0.2

Or see this region's nucleotide sequence