Strain Fitness in Pseudomonas sp. RS175 around PFR28_01378

Experiment: trans-aconitic (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	trans-aconitic (C) 5 mM
1,501,930	+		PFR28_01377	0.84	+1.4
1,501,930	+		PFR28_01377	0.84	-1.1
1,501,954	+		PFR28_01377	0.84	-1.1
1,501,955	-		PFR28_01377	0.85	+0.4
1,502,074	+		PFR28_01377	0.88	-0.3
1,502,074	+		PFR28_01377	0.88	-0.4
1,502,074	+		PFR28_01377	0.88	-2.1
1,502,074	+		PFR28_01377	0.88	+0.4
1,502,074	+		PFR28_01377	0.88	+1.1
1,502,074	+		PFR28_01377	0.88	-1.6
1,502,075	-		PFR28_01377	0.88	-2.0
1,502,140	+		PFR28_01377	0.89	-0.9
1,502,140	+		PFR28_01377	0.89	+0.0
1,502,140	+		PFR28_01377	0.89	+1.8
1,502,140	+		PFR28_01377	0.89	-1.6
1,502,140	+		PFR28_01377	0.89	+0.3
1,502,141	-		PFR28_01377	0.89	-0.2
1,502,141	-		PFR28_01377	0.89	-1.9
1,502,141	-		PFR28_01377	0.89	+0.1
1,502,141	-		PFR28_01377	0.89	-0.1
1,502,141	-		PFR28_01377	0.89	-1.1
1,502,322	+				+0.4
1,502,347	+				-0.8
1,502,347	+				-1.3
1,502,348	-				-0.0
1,502,368	+				-0.2
1,502,369	-				-1.4
1,502,369	-				-2.1
1,502,369	-				-2.1
1,502,560	+				+0.4
1,502,560	+				-0.9
1,502,561	-				+0.0
1,502,561	-				+1.4
1,502,561	-				-0.3
1,502,571	+				-1.7
1,502,572	-				-0.3
1,502,604	+				-0.2
1,502,908	+		PFR28_01378	0.30	+0.5
1,502,908	+		PFR28_01378	0.30	-1.0
1,502,908	+		PFR28_01378	0.30	-0.9
1,502,909	-		PFR28_01378	0.30	-0.8
1,502,909	-		PFR28_01378	0.30	+0.9
1,502,909	-		PFR28_01378	0.30	-1.2
1,502,909	-		PFR28_01378	0.30	-1.7
1,502,909	-		PFR28_01378	0.30	-1.6
1,502,909	-		PFR28_01378	0.30	+0.1
1,502,909	-		PFR28_01378	0.30	-0.9
1,504,248	-				-2.7
1,504,311	+				+0.7
1,504,311	+				+0.0
1,504,312	-				+1.4
1,504,433	+				-0.6
1,504,433	+				-0.6
1,504,433	+				-1.0
1,504,434	-				-0.1
1,504,434	-				-0.2
1,504,434	-				-0.2
1,504,434	-				-0.6
1,504,434	-				-0.0
1,504,473	-				+0.2
1,504,473	-				+0.1
1,504,513	+				+0.5
1,504,514	-				+1.2
1,504,514	-				+0.6
1,504,536	-				+0.4