Strain Fitness in Pseudomonas sp. RS175 around PFR28_01142

Experiment: trans-aconitic (C) 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_01140 and PFR28_01141 overlap by 1 nucleotidesPFR28_01141 and PFR28_01142 are separated by 97 nucleotidesPFR28_01142 and PFR28_01143 are separated by 179 nucleotides PFR28_01140: PFR28_01140 - Regulator of RpoS, at 1,261,517 to 1,262,761 _01140 PFR28_01141: PFR28_01141 - hypothetical protein, at 1,262,761 to 1,263,249 _01141 PFR28_01142: PFR28_01142 - Transaldolase, at 1,263,347 to 1,264,273 _01142 PFR28_01143: PFR28_01143 - tRNA-dihydrouridine(20/20a) synthase, at 1,264,453 to 1,265,391 _01143 Position (kb) 1263 1264 1265Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1263.406 kb on + strandat 1263.614 kb on - strand, within PFR28_01142at 1263.635 kb on + strand, within PFR28_01142at 1263.645 kb on + strand, within PFR28_01142at 1263.645 kb on + strand, within PFR28_01142at 1263.645 kb on + strand, within PFR28_01142at 1263.646 kb on - strand, within PFR28_01142at 1263.646 kb on - strand, within PFR28_01142at 1263.646 kb on - strand, within PFR28_01142at 1263.646 kb on - strand, within PFR28_01142at 1263.646 kb on - strand, within PFR28_01142at 1263.660 kb on + strand, within PFR28_01142at 1263.660 kb on + strand, within PFR28_01142at 1263.660 kb on + strand, within PFR28_01142at 1263.660 kb on + strand, within PFR28_01142at 1263.661 kb on - strand, within PFR28_01142at 1263.661 kb on - strand, within PFR28_01142at 1263.661 kb on - strand, within PFR28_01142at 1263.661 kb on - strand, within PFR28_01142at 1263.661 kb on - strand, within PFR28_01142at 1263.661 kb on - strand, within PFR28_01142at 1263.661 kb on - strand, within PFR28_01142at 1263.663 kb on + strand, within PFR28_01142at 1263.663 kb on + strand, within PFR28_01142at 1263.663 kb on + strand, within PFR28_01142at 1263.663 kb on + strand, within PFR28_01142at 1263.663 kb on + strand, within PFR28_01142at 1263.663 kb on + strand, within PFR28_01142at 1263.664 kb on - strand, within PFR28_01142at 1263.664 kb on - strand, within PFR28_01142at 1263.664 kb on - strand, within PFR28_01142at 1263.669 kb on + strand, within PFR28_01142at 1263.669 kb on + strand, within PFR28_01142at 1263.669 kb on + strand, within PFR28_01142at 1263.669 kb on + strand, within PFR28_01142at 1263.669 kb on + strand, within PFR28_01142at 1263.669 kb on + strand, within PFR28_01142at 1263.669 kb on + strand, within PFR28_01142at 1263.669 kb on + strand, within PFR28_01142at 1263.669 kb on + strand, within PFR28_01142at 1263.669 kb on + strand, within PFR28_01142at 1263.669 kb on + strand, within PFR28_01142at 1263.670 kb on - strand, within PFR28_01142at 1263.670 kb on - strand, within PFR28_01142at 1263.670 kb on - strand, within PFR28_01142at 1263.670 kb on - strand, within PFR28_01142at 1263.670 kb on - strand, within PFR28_01142at 1263.670 kb on - strand, within PFR28_01142at 1263.670 kb on - strand, within PFR28_01142at 1263.670 kb on - strand, within PFR28_01142at 1263.714 kb on + strand, within PFR28_01142at 1263.714 kb on + strand, within PFR28_01142at 1263.715 kb on - strand, within PFR28_01142at 1263.739 kb on - strand, within PFR28_01142at 1263.739 kb on - strand, within PFR28_01142at 1263.739 kb on - strand, within PFR28_01142at 1263.739 kb on - strand, within PFR28_01142at 1263.739 kb on - strand, within PFR28_01142at 1263.747 kb on + strand, within PFR28_01142at 1263.747 kb on + strand, within PFR28_01142at 1263.747 kb on + strand, within PFR28_01142at 1263.747 kb on + strand, within PFR28_01142at 1263.747 kb on + strand, within PFR28_01142at 1263.748 kb on - strand, within PFR28_01142at 1263.748 kb on - strand, within PFR28_01142at 1263.751 kb on + strand, within PFR28_01142at 1263.751 kb on + strand, within PFR28_01142at 1263.752 kb on - strand, within PFR28_01142at 1263.752 kb on - strand, within PFR28_01142at 1263.752 kb on - strand, within PFR28_01142at 1263.753 kb on - strand, within PFR28_01142at 1263.759 kb on - strand, within PFR28_01142at 1263.780 kb on - strand, within PFR28_01142at 1263.780 kb on - strand, within PFR28_01142at 1263.939 kb on + strand, within PFR28_01142at 1263.940 kb on - strand, within PFR28_01142at 1263.940 kb on - strand, within PFR28_01142at 1264.018 kb on + strand, within PFR28_01142at 1264.018 kb on + strand, within PFR28_01142at 1264.018 kb on + strand, within PFR28_01142at 1264.019 kb on - strand, within PFR28_01142at 1264.019 kb on - strand, within PFR28_01142at 1264.131 kb on + strand, within PFR28_01142at 1264.131 kb on + strand, within PFR28_01142at 1264.204 kb on + strandat 1264.204 kb on + strandat 1264.204 kb on + strandat 1264.204 kb on + strandat 1264.204 kb on + strandat 1264.205 kb on - strandat 1264.205 kb on - strandat 1264.237 kb on + strandat 1264.289 kb on + strandat 1264.290 kb on - strandat 1264.290 kb on - strandat 1264.290 kb on - strandat 1264.401 kb on + strandat 1264.409 kb on - strandat 1264.412 kb on + strandat 1264.412 kb on + strandat 1264.412 kb on + strandat 1264.412 kb on + strandat 1264.413 kb on - strandat 1264.413 kb on - strandat 1264.413 kb on - strandat 1264.413 kb on - strandat 1264.413 kb on - strandat 1264.413 kb on - strandat 1264.413 kb on - strandat 1264.580 kb on - strand, within PFR28_01143at 1264.580 kb on - strand, within PFR28_01143at 1264.580 kb on - strand, within PFR28_01143at 1264.634 kb on + strand, within PFR28_01143at 1264.634 kb on + strand, within PFR28_01143at 1264.634 kb on + strand, within PFR28_01143at 1264.634 kb on + strand, within PFR28_01143at 1264.634 kb on + strand, within PFR28_01143at 1264.634 kb on + strand, within PFR28_01143at 1264.634 kb on + strand, within PFR28_01143at 1264.634 kb on + strand, within PFR28_01143at 1264.634 kb on + strand, within PFR28_01143at 1264.634 kb on + strand, within PFR28_01143at 1264.634 kb on + strand, within PFR28_01143at 1264.634 kb on + strand, within PFR28_01143at 1264.635 kb on - strand, within PFR28_01143at 1264.635 kb on - strand, within PFR28_01143at 1264.635 kb on - strand, within PFR28_01143at 1264.635 kb on - strand, within PFR28_01143at 1264.635 kb on - strand, within PFR28_01143at 1264.635 kb on - strand, within PFR28_01143at 1264.635 kb on - strand, within PFR28_01143at 1264.635 kb on - strand, within PFR28_01143at 1264.635 kb on - strand, within PFR28_01143at 1264.635 kb on - strand, within PFR28_01143at 1264.721 kb on + strand, within PFR28_01143at 1264.721 kb on + strand, within PFR28_01143at 1264.722 kb on - strand, within PFR28_01143at 1264.722 kb on - strand, within PFR28_01143at 1264.722 kb on - strand, within PFR28_01143at 1264.722 kb on - strand, within PFR28_01143at 1264.722 kb on - strand, within PFR28_01143at 1264.933 kb on + strand, within PFR28_01143at 1264.933 kb on + strand, within PFR28_01143at 1264.933 kb on + strand, within PFR28_01143at 1264.933 kb on + strand, within PFR28_01143at 1264.933 kb on + strand, within PFR28_01143at 1264.933 kb on + strand, within PFR28_01143at 1264.933 kb on + strand, within PFR28_01143at 1264.933 kb on + strand, within PFR28_01143at 1264.933 kb on + strand, within PFR28_01143at 1264.933 kb on + strand, within PFR28_01143at 1264.934 kb on - strand, within PFR28_01143at 1264.934 kb on - strand, within PFR28_01143at 1264.934 kb on - strand, within PFR28_01143at 1264.934 kb on - strand, within PFR28_01143at 1264.934 kb on - strand, within PFR28_01143at 1264.994 kb on + strand, within PFR28_01143at 1264.994 kb on + strand, within PFR28_01143at 1264.995 kb on - strand, within PFR28_01143at 1264.995 kb on - strand, within PFR28_01143at 1264.995 kb on - strand, within PFR28_01143at 1264.995 kb on - strand, within PFR28_01143at 1265.118 kb on + strand, within PFR28_01143at 1265.118 kb on + strand, within PFR28_01143at 1265.118 kb on + strand, within PFR28_01143at 1265.118 kb on + strand, within PFR28_01143at 1265.118 kb on + strand, within PFR28_01143at 1265.118 kb on + strand, within PFR28_01143at 1265.119 kb on - strand, within PFR28_01143at 1265.119 kb on - strand, within PFR28_01143at 1265.119 kb on - strand, within PFR28_01143at 1265.119 kb on - strand, within PFR28_01143at 1265.128 kb on + strand, within PFR28_01143at 1265.171 kb on + strand, within PFR28_01143at 1265.171 kb on + strand, within PFR28_01143at 1265.171 kb on + strand, within PFR28_01143at 1265.171 kb on + strand, within PFR28_01143at 1265.172 kb on - strand, within PFR28_01143at 1265.172 kb on - strand, within PFR28_01143at 1265.172 kb on - strand, within PFR28_01143at 1265.172 kb on - strand, within PFR28_01143

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Per-strain Table

Position Strand Gene LocusTag Fraction trans-aconitic (C) 5 mM
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1,263,406 + -0.3
1,263,614 - PFR28_01142 0.29 -1.8
1,263,635 + PFR28_01142 0.31 -1.3
1,263,645 + PFR28_01142 0.32 -1.6
1,263,645 + PFR28_01142 0.32 -0.5
1,263,645 + PFR28_01142 0.32 +0.2
1,263,646 - PFR28_01142 0.32 -1.3
1,263,646 - PFR28_01142 0.32 -1.3
1,263,646 - PFR28_01142 0.32 -1.9
1,263,646 - PFR28_01142 0.32 -1.1
1,263,646 - PFR28_01142 0.32 -1.1
1,263,660 + PFR28_01142 0.34 -1.2
1,263,660 + PFR28_01142 0.34 -0.4
1,263,660 + PFR28_01142 0.34 -0.3
1,263,660 + PFR28_01142 0.34 -1.6
1,263,661 - PFR28_01142 0.34 -1.2
1,263,661 - PFR28_01142 0.34 -1.0
1,263,661 - PFR28_01142 0.34 -1.5
1,263,661 - PFR28_01142 0.34 -0.6
1,263,661 - PFR28_01142 0.34 -1.7
1,263,661 - PFR28_01142 0.34 -1.8
1,263,661 - PFR28_01142 0.34 -1.6
1,263,663 + PFR28_01142 0.34 -0.9
1,263,663 + PFR28_01142 0.34 -1.8
1,263,663 + PFR28_01142 0.34 +0.1
1,263,663 + PFR28_01142 0.34 -0.5
1,263,663 + PFR28_01142 0.34 +0.3
1,263,663 + PFR28_01142 0.34 -0.4
1,263,664 - PFR28_01142 0.34 -1.3
1,263,664 - PFR28_01142 0.34 -1.5
1,263,664 - PFR28_01142 0.34 -0.6
1,263,669 + PFR28_01142 0.35 -2.0
1,263,669 + PFR28_01142 0.35 -1.7
1,263,669 + PFR28_01142 0.35 -1.2
1,263,669 + PFR28_01142 0.35 -1.7
1,263,669 + PFR28_01142 0.35 -0.5
1,263,669 + PFR28_01142 0.35 +0.5
1,263,669 + PFR28_01142 0.35 -0.9
1,263,669 + PFR28_01142 0.35 -0.2
1,263,669 + PFR28_01142 0.35 -2.0
1,263,669 + PFR28_01142 0.35 -0.9
1,263,669 + PFR28_01142 0.35 +0.7
1,263,670 - PFR28_01142 0.35 -2.0
1,263,670 - PFR28_01142 0.35 -1.3
1,263,670 - PFR28_01142 0.35 -0.4
1,263,670 - PFR28_01142 0.35 -1.9
1,263,670 - PFR28_01142 0.35 -0.6
1,263,670 - PFR28_01142 0.35 -1.0
1,263,670 - PFR28_01142 0.35 -0.7
1,263,670 - PFR28_01142 0.35 -1.5
1,263,714 + PFR28_01142 0.40 -0.9
1,263,714 + PFR28_01142 0.40 -3.1
1,263,715 - PFR28_01142 0.40 -1.8
1,263,739 - PFR28_01142 0.42 -0.9
1,263,739 - PFR28_01142 0.42 -1.2
1,263,739 - PFR28_01142 0.42 -1.9
1,263,739 - PFR28_01142 0.42 -0.9
1,263,739 - PFR28_01142 0.42 -1.2
1,263,747 + PFR28_01142 0.43 +0.0
1,263,747 + PFR28_01142 0.43 -0.1
1,263,747 + PFR28_01142 0.43 -0.0
1,263,747 + PFR28_01142 0.43 -0.9
1,263,747 + PFR28_01142 0.43 -0.2
1,263,748 - PFR28_01142 0.43 -1.0
1,263,748 - PFR28_01142 0.43 +0.2
1,263,751 + PFR28_01142 0.44 -0.8
1,263,751 + PFR28_01142 0.44 -1.0
1,263,752 - PFR28_01142 0.44 -0.1
1,263,752 - PFR28_01142 0.44 -2.4
1,263,752 - PFR28_01142 0.44 -0.7
1,263,753 - PFR28_01142 0.44 -2.7
1,263,759 - PFR28_01142 0.44 -0.8
1,263,780 - PFR28_01142 0.47 -0.4
1,263,780 - PFR28_01142 0.47 -0.5
1,263,939 + PFR28_01142 0.64 -1.0
1,263,940 - PFR28_01142 0.64 -2.8
1,263,940 - PFR28_01142 0.64 -2.7
1,264,018 + PFR28_01142 0.72 -1.4
1,264,018 + PFR28_01142 0.72 -0.8
1,264,018 + PFR28_01142 0.72 -1.0
1,264,019 - PFR28_01142 0.72 -0.9
1,264,019 - PFR28_01142 0.72 -0.6
1,264,131 + PFR28_01142 0.85 -2.7
1,264,131 + PFR28_01142 0.85 -0.4
1,264,204 + +0.1
1,264,204 + -0.3
1,264,204 + +1.2
1,264,204 + -1.3
1,264,204 + -0.9
1,264,205 - +1.0
1,264,205 - +1.4
1,264,237 + +0.4
1,264,289 + +0.1
1,264,290 - -0.5
1,264,290 - +0.3
1,264,290 - -0.0
1,264,401 + -0.7
1,264,409 - -0.0
1,264,412 + -0.9
1,264,412 + +0.2
1,264,412 + +0.4
1,264,412 + +1.2
1,264,413 - -0.6
1,264,413 - -0.1
1,264,413 - +1.2
1,264,413 - -0.1
1,264,413 - +0.7
1,264,413 - -0.7
1,264,413 - -0.2
1,264,580 - PFR28_01143 0.14 +0.4
1,264,580 - PFR28_01143 0.14 +0.1
1,264,580 - PFR28_01143 0.14 +0.4
1,264,634 + PFR28_01143 0.19 -1.5
1,264,634 + PFR28_01143 0.19 -0.7
1,264,634 + PFR28_01143 0.19 +1.4
1,264,634 + PFR28_01143 0.19 -0.3
1,264,634 + PFR28_01143 0.19 -0.3
1,264,634 + PFR28_01143 0.19 -1.5
1,264,634 + PFR28_01143 0.19 +0.1
1,264,634 + PFR28_01143 0.19 -0.6
1,264,634 + PFR28_01143 0.19 +0.3
1,264,634 + PFR28_01143 0.19 -0.9
1,264,634 + PFR28_01143 0.19 +1.0
1,264,634 + PFR28_01143 0.19 -0.4
1,264,635 - PFR28_01143 0.19 +0.8
1,264,635 - PFR28_01143 0.19 +0.2
1,264,635 - PFR28_01143 0.19 +0.0
1,264,635 - PFR28_01143 0.19 +1.1
1,264,635 - PFR28_01143 0.19 -0.7
1,264,635 - PFR28_01143 0.19 +0.0
1,264,635 - PFR28_01143 0.19 -1.9
1,264,635 - PFR28_01143 0.19 +0.1
1,264,635 - PFR28_01143 0.19 -0.1
1,264,635 - PFR28_01143 0.19 -0.5
1,264,721 + PFR28_01143 0.29 +0.2
1,264,721 + PFR28_01143 0.29 +0.8
1,264,722 - PFR28_01143 0.29 +0.7
1,264,722 - PFR28_01143 0.29 -0.2
1,264,722 - PFR28_01143 0.29 -1.6
1,264,722 - PFR28_01143 0.29 -0.7
1,264,722 - PFR28_01143 0.29 +0.3
1,264,933 + PFR28_01143 0.51 +0.2
1,264,933 + PFR28_01143 0.51 +0.3
1,264,933 + PFR28_01143 0.51 +1.1
1,264,933 + PFR28_01143 0.51 +0.1
1,264,933 + PFR28_01143 0.51 -2.4
1,264,933 + PFR28_01143 0.51 -0.8
1,264,933 + PFR28_01143 0.51 -1.1
1,264,933 + PFR28_01143 0.51 -0.7
1,264,933 + PFR28_01143 0.51 -1.5
1,264,933 + PFR28_01143 0.51 -0.3
1,264,934 - PFR28_01143 0.51 -0.6
1,264,934 - PFR28_01143 0.51 +0.1
1,264,934 - PFR28_01143 0.51 -0.4
1,264,934 - PFR28_01143 0.51 -0.4
1,264,934 - PFR28_01143 0.51 -1.7
1,264,994 + PFR28_01143 0.58 -0.2
1,264,994 + PFR28_01143 0.58 -0.6
1,264,995 - PFR28_01143 0.58 -0.5
1,264,995 - PFR28_01143 0.58 +0.0
1,264,995 - PFR28_01143 0.58 -0.6
1,264,995 - PFR28_01143 0.58 +0.9
1,265,118 + PFR28_01143 0.71 +0.8
1,265,118 + PFR28_01143 0.71 +1.0
1,265,118 + PFR28_01143 0.71 -1.6
1,265,118 + PFR28_01143 0.71 +3.0
1,265,118 + PFR28_01143 0.71 +0.8
1,265,118 + PFR28_01143 0.71 -1.7
1,265,119 - PFR28_01143 0.71 -1.5
1,265,119 - PFR28_01143 0.71 +0.5
1,265,119 - PFR28_01143 0.71 -0.8
1,265,119 - PFR28_01143 0.71 -0.4
1,265,128 + PFR28_01143 0.72 -0.9
1,265,171 + PFR28_01143 0.76 +0.3
1,265,171 + PFR28_01143 0.76 +0.9
1,265,171 + PFR28_01143 0.76 +0.4
1,265,171 + PFR28_01143 0.76 +2.0
1,265,172 - PFR28_01143 0.77 -1.4
1,265,172 - PFR28_01143 0.77 +1.2
1,265,172 - PFR28_01143 0.77 -0.9
1,265,172 - PFR28_01143 0.77 +1.2

Or see this region's nucleotide sequence