Strain Fitness in Pseudomonas sp. RS175 around PFR28_01137

Experiment: trans-aconitic (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	trans-aconitic (C) 5 mM
1,258,399	+				-0.2
1,258,400	-				-2.3
1,258,400	-				+0.3
1,258,400	-				+0.2
1,258,400	-				+0.6
1,258,411	+				+0.3
1,258,411	+				+0.0
1,258,411	+				+0.2
1,258,411	+				-0.4
1,258,411	+				+0.1
1,258,412	-				-0.6
1,258,412	-				+0.2
1,258,489	+		PFR28_01136	0.16	+1.2
1,258,490	-		PFR28_01136	0.16	+1.1
1,258,624	+		PFR28_01136	0.32	+0.4
1,258,624	+		PFR28_01136	0.32	+3.0
1,258,816	+		PFR28_01136	0.56	+0.0
1,258,987	+		PFR28_01136	0.76	+2.2
1,258,987	+		PFR28_01136	0.76	-0.8
1,258,987	+		PFR28_01136	0.76	-1.9
1,258,987	+		PFR28_01136	0.76	-0.2
1,258,987	+		PFR28_01136	0.76	+1.0
1,258,988	-		PFR28_01136	0.76	-0.2
1,258,988	-		PFR28_01136	0.76	+0.1
1,258,988	-		PFR28_01136	0.76	+0.0
1,258,988	-		PFR28_01136	0.76	-0.6
1,258,988	-		PFR28_01136	0.76	-1.1
1,258,988	-		PFR28_01136	0.76	-0.1
1,258,988	-		PFR28_01136	0.76	-0.5
1,259,089	+		PFR28_01136	0.88	+1.5
1,259,089	+		PFR28_01136	0.88	-1.0
1,259,089	+		PFR28_01136	0.88	+0.6
1,259,089	+		PFR28_01136	0.88	+0.8
1,259,090	-		PFR28_01136	0.89	-0.1
1,259,090	-		PFR28_01136	0.89	-1.7
1,259,090	-		PFR28_01136	0.89	-1.2
1,259,090	-		PFR28_01136	0.89	-0.3
1,259,090	-		PFR28_01136	0.89	-0.3
1,259,090	-		PFR28_01136	0.89	+0.1
1,259,090	-		PFR28_01136	0.89	+0.3
1,259,098	+		PFR28_01136	0.90	-2.3
1,259,098	+		PFR28_01136	0.90	-1.8
1,259,099	-		PFR28_01136	0.90	+0.3
1,259,099	-		PFR28_01136	0.90	+1.4
1,259,099	-		PFR28_01136	0.90	+0.9
1,259,099	-		PFR28_01136	0.90	-0.6
1,259,337	+				-0.3
1,259,338	-				-1.4
1,259,356	+				-0.1
1,259,356	+				-0.3
1,259,357	-				+0.3
1,259,357	-				-0.4
1,259,357	-				-0.2
1,259,408	-		PFR28_01137	0.21	-1.3
1,259,408	-		PFR28_01137	0.21	-0.6
1,259,622	+				-0.4
1,259,622	+				-1.4
1,259,622	+				+0.0
1,259,623	-				+0.6
1,259,629	+				+0.8
1,259,685	+				+1.0
1,259,685	+				-0.6
1,259,685	+				-0.4
1,259,685	+				-0.5
1,259,685	+				-0.0
1,259,686	-				-0.2
1,259,691	+				-0.9
1,259,692	-				+1.0
1,259,692	-				-0.9
1,259,692	-				+1.3
1,259,938	-		PFR28_01138	0.34	-0.6
1,260,162	+		PFR28_01138	0.71	+0.0
1,260,163	-		PFR28_01138	0.71	+1.0
1,260,163	-		PFR28_01138	0.71	-1.5
1,260,294	+				-0.6
1,260,295	-				+1.3
1,260,374	-				+0.2
1,260,435	+				-0.0
1,260,443	+				-0.3
1,260,443	+				+0.3
1,260,443	+				+0.2
1,260,444	-				-0.4
1,260,444	-				-0.1
1,260,481	+				-0.1
1,260,481	+				-0.5
1,260,481	+				+0.4
1,260,482	-				-1.0
1,260,482	-				+0.9
1,260,482	-				+0.2
1,260,482	-				-0.3
1,260,482	-				-0.4
1,260,483	+				+1.8
1,260,483	+				-0.4
1,260,483	+				+1.4
1,260,483	+				-0.4
1,260,483	+				+2.0
1,260,483	+				+0.1
1,260,483	+				-0.4
1,260,484	-				+0.3
1,260,484	-				-0.6
1,260,484	-				-1.7
1,260,484	-				+0.1
1,260,484	-				-0.2
1,260,484	-				-1.1
1,260,486	+				+0.4
1,260,486	+				+0.9
1,260,486	+				+0.4
1,260,487	-				-0.9
1,260,487	-				-2.4
1,260,487	-				-0.5
1,260,487	-				-0.3
1,260,545	+				-1.9
1,260,546	-				+2.8
1,260,546	-				-0.0
1,260,565	+				-0.1
1,260,565	+				-0.6
1,260,566	-				+0.3