Strain Fitness in Pseudomonas sp. RS175 around PFR28_00913

Experiment: trans-aconitic (C) 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00911 and PFR28_00912 are separated by 221 nucleotidesPFR28_00912 and PFR28_00913 are separated by 144 nucleotidesPFR28_00913 and PFR28_00914 are separated by 25 nucleotidesPFR28_00914 and PFR28_00915 are separated by 185 nucleotides PFR28_00911: PFR28_00911 - 30S ribosomal protein S1, at 991,746 to 993,437 _00911 PFR28_00912: PFR28_00912 - hypothetical protein, at 993,659 to 993,937 _00912 PFR28_00913: PFR28_00913 - Integration host factor subunit beta, at 994,082 to 994,378 _00913 PFR28_00914: PFR28_00914 - hypothetical protein, at 994,404 to 994,628 _00914 PFR28_00915: PFR28_00915 - Chain length determinant protein, at 994,814 to 995,884 _00915 Position (kb) 994 995Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 993.493 kb on + strandat 993.493 kb on + strandat 993.493 kb on + strandat 993.493 kb on + strandat 993.494 kb on - strandat 993.576 kb on + strandat 993.576 kb on + strandat 993.576 kb on + strandat 993.598 kb on + strandat 993.598 kb on + strandat 993.598 kb on + strandat 993.598 kb on + strandat 993.599 kb on - strandat 993.599 kb on - strandat 993.695 kb on - strand, within PFR28_00912at 993.709 kb on + strand, within PFR28_00912at 993.709 kb on + strand, within PFR28_00912at 993.710 kb on - strand, within PFR28_00912at 993.742 kb on - strand, within PFR28_00912at 993.742 kb on - strand, within PFR28_00912at 993.742 kb on - strand, within PFR28_00912at 993.742 kb on - strand, within PFR28_00912at 993.831 kb on - strand, within PFR28_00912at 993.831 kb on - strand, within PFR28_00912at 993.837 kb on + strand, within PFR28_00912at 993.837 kb on + strand, within PFR28_00912at 993.838 kb on - strand, within PFR28_00912at 993.838 kb on - strand, within PFR28_00912at 993.838 kb on - strand, within PFR28_00912at 993.838 kb on - strand, within PFR28_00912at 993.838 kb on - strand, within PFR28_00912at 993.838 kb on - strand, within PFR28_00912at 993.838 kb on - strand, within PFR28_00912at 993.840 kb on + strand, within PFR28_00912at 993.841 kb on - strand, within PFR28_00912at 993.903 kb on - strand, within PFR28_00912at 993.913 kb on + strandat 993.913 kb on + strandat 993.936 kb on - strandat 993.936 kb on - strandat 994.033 kb on - strandat 994.165 kb on + strand, within PFR28_00913at 994.165 kb on + strand, within PFR28_00913at 994.165 kb on + strand, within PFR28_00913at 994.165 kb on + strand, within PFR28_00913at 994.165 kb on + strand, within PFR28_00913at 994.165 kb on + strand, within PFR28_00913at 994.165 kb on + strand, within PFR28_00913at 994.165 kb on + strand, within PFR28_00913at 994.165 kb on + strand, within PFR28_00913at 994.166 kb on - strand, within PFR28_00913at 994.166 kb on - strand, within PFR28_00913at 994.166 kb on - strand, within PFR28_00913at 994.166 kb on - strand, within PFR28_00913at 994.166 kb on - strand, within PFR28_00913at 994.166 kb on - strand, within PFR28_00913at 994.260 kb on + strand, within PFR28_00913at 994.311 kb on + strand, within PFR28_00913at 994.311 kb on + strand, within PFR28_00913at 994.312 kb on - strand, within PFR28_00913at 994.312 kb on - strand, within PFR28_00913at 994.312 kb on - strand, within PFR28_00913at 994.331 kb on - strand, within PFR28_00913at 994.350 kb on + strandat 994.351 kb on - strandat 994.351 kb on - strandat 994.404 kb on - strandat 994.460 kb on + strand, within PFR28_00914at 994.461 kb on - strand, within PFR28_00914at 994.567 kb on + strand, within PFR28_00914at 994.567 kb on + strand, within PFR28_00914at 994.567 kb on + strand, within PFR28_00914at 994.568 kb on - strand, within PFR28_00914at 994.568 kb on - strand, within PFR28_00914at 994.568 kb on - strand, within PFR28_00914at 994.627 kb on - strandat 994.627 kb on - strandat 994.658 kb on - strandat 994.658 kb on - strandat 994.687 kb on + strandat 994.688 kb on - strandat 994.764 kb on + strandat 994.765 kb on - strandat 994.905 kb on + strandat 994.910 kb on - strandat 994.910 kb on - strandat 994.924 kb on + strand, within PFR28_00915at 994.924 kb on + strand, within PFR28_00915at 994.985 kb on - strand, within PFR28_00915at 995.025 kb on - strand, within PFR28_00915at 995.057 kb on + strand, within PFR28_00915at 995.083 kb on - strand, within PFR28_00915at 995.187 kb on + strand, within PFR28_00915at 995.187 kb on + strand, within PFR28_00915at 995.187 kb on + strand, within PFR28_00915at 995.187 kb on + strand, within PFR28_00915at 995.188 kb on - strand, within PFR28_00915at 995.189 kb on + strand, within PFR28_00915at 995.190 kb on - strand, within PFR28_00915at 995.190 kb on - strand, within PFR28_00915at 995.190 kb on - strand, within PFR28_00915at 995.298 kb on + strand, within PFR28_00915at 995.306 kb on + strand, within PFR28_00915at 995.307 kb on - strand, within PFR28_00915at 995.307 kb on - strand, within PFR28_00915at 995.307 kb on - strand, within PFR28_00915at 995.307 kb on - strand, within PFR28_00915at 995.307 kb on - strand, within PFR28_00915at 995.307 kb on - strand, within PFR28_00915at 995.373 kb on + strand, within PFR28_00915at 995.373 kb on + strand, within PFR28_00915at 995.373 kb on + strand, within PFR28_00915at 995.374 kb on - strand, within PFR28_00915

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Per-strain Table

Position Strand Gene LocusTag Fraction trans-aconitic (C) 5 mM
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993,493 + -0.9
993,493 + -1.4
993,493 + -0.2
993,493 + -0.2
993,494 - -1.5
993,576 + -0.1
993,576 + -0.2
993,576 + -1.1
993,598 + -0.0
993,598 + +0.5
993,598 + -1.6
993,598 + -0.5
993,599 - +0.6
993,599 - -0.9
993,695 - PFR28_00912 0.13 -1.0
993,709 + PFR28_00912 0.18 +0.1
993,709 + PFR28_00912 0.18 -0.6
993,710 - PFR28_00912 0.18 -0.4
993,742 - PFR28_00912 0.30 -1.0
993,742 - PFR28_00912 0.30 +0.9
993,742 - PFR28_00912 0.30 +0.8
993,742 - PFR28_00912 0.30 +0.3
993,831 - PFR28_00912 0.62 +0.2
993,831 - PFR28_00912 0.62 -0.4
993,837 + PFR28_00912 0.64 -1.0
993,837 + PFR28_00912 0.64 -0.5
993,838 - PFR28_00912 0.64 -0.1
993,838 - PFR28_00912 0.64 +0.2
993,838 - PFR28_00912 0.64 -1.5
993,838 - PFR28_00912 0.64 +0.5
993,838 - PFR28_00912 0.64 -1.1
993,838 - PFR28_00912 0.64 -1.0
993,838 - PFR28_00912 0.64 +1.1
993,840 + PFR28_00912 0.65 -0.3
993,841 - PFR28_00912 0.65 -0.1
993,903 - PFR28_00912 0.87 +0.5
993,913 + +0.3
993,913 + +0.7
993,936 - +0.0
993,936 - +0.3
994,033 - +1.5
994,165 + PFR28_00913 0.28 +0.7
994,165 + PFR28_00913 0.28 -2.3
994,165 + PFR28_00913 0.28 -0.5
994,165 + PFR28_00913 0.28 -0.3
994,165 + PFR28_00913 0.28 +0.5
994,165 + PFR28_00913 0.28 -0.2
994,165 + PFR28_00913 0.28 -1.2
994,165 + PFR28_00913 0.28 -0.3
994,165 + PFR28_00913 0.28 -0.9
994,166 - PFR28_00913 0.28 -0.9
994,166 - PFR28_00913 0.28 -1.1
994,166 - PFR28_00913 0.28 -2.6
994,166 - PFR28_00913 0.28 -1.0
994,166 - PFR28_00913 0.28 -0.4
994,166 - PFR28_00913 0.28 -1.5
994,260 + PFR28_00913 0.60 -1.0
994,311 + PFR28_00913 0.77 -0.4
994,311 + PFR28_00913 0.77 -1.9
994,312 - PFR28_00913 0.77 -2.4
994,312 - PFR28_00913 0.77 -0.5
994,312 - PFR28_00913 0.77 -0.4
994,331 - PFR28_00913 0.84 -1.5
994,350 + -0.1
994,351 - -0.4
994,351 - -1.1
994,404 - -0.0
994,460 + PFR28_00914 0.25 -0.8
994,461 - PFR28_00914 0.25 -0.2
994,567 + PFR28_00914 0.72 -0.2
994,567 + PFR28_00914 0.72 -0.5
994,567 + PFR28_00914 0.72 -0.8
994,568 - PFR28_00914 0.73 -0.1
994,568 - PFR28_00914 0.73 +0.1
994,568 - PFR28_00914 0.73 -0.1
994,627 - -0.4
994,627 - -0.7
994,658 - +0.2
994,658 - -1.2
994,687 + -1.5
994,688 - +1.5
994,764 + -0.1
994,765 - +0.6
994,905 + +2.0
994,910 - +1.4
994,910 - +0.1
994,924 + PFR28_00915 0.10 +0.0
994,924 + PFR28_00915 0.10 +0.5
994,985 - PFR28_00915 0.16 +0.3
995,025 - PFR28_00915 0.20 +0.8
995,057 + PFR28_00915 0.23 +0.4
995,083 - PFR28_00915 0.25 -0.1
995,187 + PFR28_00915 0.35 +0.2
995,187 + PFR28_00915 0.35 +1.1
995,187 + PFR28_00915 0.35 -0.4
995,187 + PFR28_00915 0.35 +0.6
995,188 - PFR28_00915 0.35 -0.1
995,189 + PFR28_00915 0.35 +1.2
995,190 - PFR28_00915 0.35 +0.2
995,190 - PFR28_00915 0.35 +1.5
995,190 - PFR28_00915 0.35 -0.1
995,298 + PFR28_00915 0.45 +2.2
995,306 + PFR28_00915 0.46 -1.9
995,307 - PFR28_00915 0.46 -2.9
995,307 - PFR28_00915 0.46 -0.1
995,307 - PFR28_00915 0.46 +0.2
995,307 - PFR28_00915 0.46 -1.3
995,307 - PFR28_00915 0.46 +0.5
995,307 - PFR28_00915 0.46 -0.6
995,373 + PFR28_00915 0.52 +0.0
995,373 + PFR28_00915 0.52 +0.6
995,373 + PFR28_00915 0.52 +0.7
995,374 - PFR28_00915 0.52 +0.5

Or see this region's nucleotide sequence