Experiment: trans-aconitic (C) 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00870 and PFR28_00871 overlap by 4 nucleotides PFR28_00871 and PFR28_00872 overlap by 4 nucleotides PFR28_00872 and PFR28_00873 overlap by 8 nucleotides PFR28_00873 and PFR28_00874 are separated by 14 nucleotides PFR28_00874 and PFR28_00875 are separated by 264 nucleotides
PFR28_00870: PFR28_00870 - Cytochrome c-type biogenesis protein CcmF, at 940,360 to 942,348
_00870
PFR28_00871: PFR28_00871 - Thiol:disulfide interchange protein DsbE, at 942,345 to 942,881
_00871
PFR28_00872: PFR28_00872 - Cytochrome c-type biogenesis protein CcmH, at 942,878 to 943,351
_00872
PFR28_00873: PFR28_00873 - hypothetical protein, at 943,344 to 944,552
_00873
PFR28_00874: PFR28_00874 - hypothetical protein, at 944,567 to 944,974
_00874
PFR28_00875: PFR28_00875 - Phosphoglycerol transferase I, at 945,239 to 947,332
_00875
Position (kb) 943
944
945 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 942.849 kb on + strand at 942.946 kb on + strand, within PFR28_00872 at 943.333 kb on + strand at 943.333 kb on + strand at 943.470 kb on + strand, within PFR28_00873 at 943.471 kb on - strand, within PFR28_00873 at 943.471 kb on - strand, within PFR28_00873 at 943.471 kb on - strand, within PFR28_00873 at 943.671 kb on + strand, within PFR28_00873 at 943.671 kb on + strand, within PFR28_00873 at 943.671 kb on + strand, within PFR28_00873 at 943.672 kb on - strand, within PFR28_00873 at 943.672 kb on - strand, within PFR28_00873 at 943.803 kb on + strand, within PFR28_00873 at 943.803 kb on + strand, within PFR28_00873 at 943.803 kb on + strand, within PFR28_00873 at 943.821 kb on + strand, within PFR28_00873 at 943.821 kb on + strand, within PFR28_00873 at 943.821 kb on + strand, within PFR28_00873 at 943.821 kb on + strand, within PFR28_00873 at 943.821 kb on + strand, within PFR28_00873 at 943.821 kb on + strand, within PFR28_00873 at 943.821 kb on + strand, within PFR28_00873 at 943.822 kb on - strand, within PFR28_00873 at 943.822 kb on - strand, within PFR28_00873 at 943.822 kb on - strand, within PFR28_00873 at 943.822 kb on - strand, within PFR28_00873 at 943.822 kb on - strand, within PFR28_00873 at 943.822 kb on - strand, within PFR28_00873 at 943.822 kb on - strand, within PFR28_00873 at 943.926 kb on + strand, within PFR28_00873 at 943.926 kb on + strand, within PFR28_00873 at 944.108 kb on + strand, within PFR28_00873 at 944.263 kb on + strand, within PFR28_00873 at 944.263 kb on + strand, within PFR28_00873 at 944.263 kb on + strand, within PFR28_00873 at 944.264 kb on - strand, within PFR28_00873 at 944.264 kb on - strand, within PFR28_00873 at 944.264 kb on - strand, within PFR28_00873 at 944.264 kb on - strand, within PFR28_00873 at 944.441 kb on + strand at 944.585 kb on - strand at 944.585 kb on - strand at 944.585 kb on - strand at 944.822 kb on + strand, within PFR28_00874 at 944.822 kb on + strand, within PFR28_00874 at 944.822 kb on + strand, within PFR28_00874 at 944.822 kb on + strand, within PFR28_00874 at 944.822 kb on + strand, within PFR28_00874 at 944.822 kb on + strand, within PFR28_00874 at 944.822 kb on + strand, within PFR28_00874 at 944.822 kb on + strand, within PFR28_00874 at 944.822 kb on + strand, within PFR28_00874 at 944.823 kb on - strand, within PFR28_00874 at 944.823 kb on - strand, within PFR28_00874 at 944.823 kb on - strand, within PFR28_00874 at 944.823 kb on - strand, within PFR28_00874 at 944.823 kb on - strand, within PFR28_00874 at 944.823 kb on - strand, within PFR28_00874 at 944.823 kb on - strand, within PFR28_00874 at 944.823 kb on - strand, within PFR28_00874 at 944.823 kb on - strand, within PFR28_00874 at 944.853 kb on - strand, within PFR28_00874 at 944.853 kb on - strand, within PFR28_00874 at 944.863 kb on + strand, within PFR28_00874 at 944.863 kb on + strand, within PFR28_00874 at 944.863 kb on + strand, within PFR28_00874 at 944.863 kb on + strand, within PFR28_00874 at 944.863 kb on + strand, within PFR28_00874 at 944.863 kb on + strand, within PFR28_00874 at 944.863 kb on + strand, within PFR28_00874 at 944.864 kb on - strand, within PFR28_00874 at 944.864 kb on - strand, within PFR28_00874 at 944.864 kb on - strand, within PFR28_00874 at 944.864 kb on - strand, within PFR28_00874 at 944.867 kb on + strand, within PFR28_00874 at 944.867 kb on + strand, within PFR28_00874 at 944.867 kb on + strand, within PFR28_00874 at 944.867 kb on + strand, within PFR28_00874 at 944.867 kb on + strand, within PFR28_00874 at 944.867 kb on + strand, within PFR28_00874 at 944.867 kb on + strand, within PFR28_00874 at 944.867 kb on + strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.934 kb on + strand at 944.934 kb on + strand at 944.934 kb on + strand at 944.934 kb on + strand at 944.934 kb on + strand at 944.934 kb on + strand at 944.934 kb on + strand at 944.934 kb on + strand at 944.934 kb on + strand at 944.934 kb on + strand at 944.935 kb on - strand at 944.935 kb on - strand at 944.935 kb on - strand at 944.935 kb on - strand at 944.935 kb on - strand at 944.935 kb on - strand at 944.935 kb on - strand at 944.935 kb on - strand at 944.935 kb on - strand at 945.102 kb on + strand at 945.119 kb on + strand at 945.120 kb on - strand at 945.120 kb on - strand at 945.120 kb on - strand at 945.120 kb on - strand at 945.190 kb on + strand at 945.191 kb on - strand at 945.191 kb on - strand at 945.191 kb on - strand at 945.223 kb on + strand at 945.223 kb on + strand at 945.223 kb on + strand at 945.223 kb on + strand at 945.223 kb on + strand at 945.223 kb on + strand at 945.223 kb on + strand at 945.223 kb on + strand at 945.223 kb on + strand at 945.224 kb on - strand at 945.224 kb on - strand at 945.224 kb on - strand at 945.224 kb on - strand at 945.224 kb on - strand at 945.224 kb on - strand at 945.230 kb on + strand at 945.230 kb on + strand at 945.230 kb on + strand at 945.231 kb on - strand at 945.317 kb on + strand at 945.317 kb on + strand at 945.317 kb on + strand at 945.317 kb on + strand at 945.318 kb on - strand at 945.318 kb on - strand at 945.318 kb on - strand at 945.318 kb on - strand at 945.319 kb on + strand at 945.319 kb on + strand at 945.320 kb on - strand at 945.320 kb on - strand at 945.383 kb on + strand at 945.383 kb on + strand at 945.383 kb on + strand at 945.383 kb on + strand at 945.383 kb on + strand at 945.383 kb on + strand at 945.383 kb on + strand at 945.383 kb on + strand at 945.383 kb on + strand at 945.384 kb on - strand at 945.384 kb on - strand at 945.384 kb on - strand at 945.384 kb on - strand at 945.384 kb on - strand at 945.384 kb on - strand at 945.384 kb on - strand at 945.384 kb on - strand at 945.384 kb on - strand at 945.384 kb on - strand at 945.384 kb on - strand at 945.473 kb on + strand, within PFR28_00875 at 945.473 kb on + strand, within PFR28_00875 at 945.473 kb on + strand, within PFR28_00875 at 945.474 kb on - strand, within PFR28_00875 at 945.474 kb on - strand, within PFR28_00875 at 945.474 kb on - strand, within PFR28_00875
Per-strain Table
Position Strand Gene LocusTag Fraction trans-aconitic (C) 5 mM remove 942,849 + -1.1 942,946 + PFR28_00872 0.14 +0.4 943,333 + -0.1 943,333 + +0.1 943,470 + PFR28_00873 0.10 -0.1 943,471 - PFR28_00873 0.11 -1.3 943,471 - PFR28_00873 0.11 -3.2 943,471 - PFR28_00873 0.11 -1.4 943,671 + PFR28_00873 0.27 -1.3 943,671 + PFR28_00873 0.27 -3.1 943,671 + PFR28_00873 0.27 -1.8 943,672 - PFR28_00873 0.27 -2.3 943,672 - PFR28_00873 0.27 -3.6 943,803 + PFR28_00873 0.38 -2.2 943,803 + PFR28_00873 0.38 -1.1 943,803 + PFR28_00873 0.38 -1.0 943,821 + PFR28_00873 0.39 -1.7 943,821 + PFR28_00873 0.39 -0.5 943,821 + PFR28_00873 0.39 -2.5 943,821 + PFR28_00873 0.39 -1.5 943,821 + PFR28_00873 0.39 -0.5 943,821 + PFR28_00873 0.39 -0.3 943,821 + PFR28_00873 0.39 -2.4 943,822 - PFR28_00873 0.40 -1.3 943,822 - PFR28_00873 0.40 -2.3 943,822 - PFR28_00873 0.40 -3.4 943,822 - PFR28_00873 0.40 -1.0 943,822 - PFR28_00873 0.40 -1.7 943,822 - PFR28_00873 0.40 -1.5 943,822 - PFR28_00873 0.40 -1.2 943,926 + PFR28_00873 0.48 -0.8 943,926 + PFR28_00873 0.48 -2.1 944,108 + PFR28_00873 0.63 -0.7 944,263 + PFR28_00873 0.76 -0.4 944,263 + PFR28_00873 0.76 +1.5 944,263 + PFR28_00873 0.76 +0.2 944,264 - PFR28_00873 0.76 +0.1 944,264 - PFR28_00873 0.76 -1.4 944,264 - PFR28_00873 0.76 +0.1 944,264 - PFR28_00873 0.76 -0.1 944,441 + -0.3 944,585 - -1.2 944,585 - -0.0 944,585 - -0.3 944,822 + PFR28_00874 0.62 +0.1 944,822 + PFR28_00874 0.62 +0.6 944,822 + PFR28_00874 0.62 -0.7 944,822 + PFR28_00874 0.62 +0.1 944,822 + PFR28_00874 0.62 -0.4 944,822 + PFR28_00874 0.62 +0.5 944,822 + PFR28_00874 0.62 -1.1 944,822 + PFR28_00874 0.62 +3.3 944,822 + PFR28_00874 0.62 -1.1 944,823 - PFR28_00874 0.63 +0.3 944,823 - PFR28_00874 0.63 -0.7 944,823 - PFR28_00874 0.63 +0.5 944,823 - PFR28_00874 0.63 -0.5 944,823 - PFR28_00874 0.63 -0.3 944,823 - PFR28_00874 0.63 -0.8 944,823 - PFR28_00874 0.63 +0.6 944,823 - PFR28_00874 0.63 -0.5 944,823 - PFR28_00874 0.63 -0.2 944,853 - PFR28_00874 0.70 +0.6 944,853 - PFR28_00874 0.70 -0.0 944,863 + PFR28_00874 0.73 -0.1 944,863 + PFR28_00874 0.73 +2.0 944,863 + PFR28_00874 0.73 -0.4 944,863 + PFR28_00874 0.73 -0.2 944,863 + PFR28_00874 0.73 +0.0 944,863 + PFR28_00874 0.73 -0.2 944,863 + PFR28_00874 0.73 -1.5 944,864 - PFR28_00874 0.73 -1.2 944,864 - PFR28_00874 0.73 -0.3 944,864 - PFR28_00874 0.73 -1.1 944,864 - PFR28_00874 0.73 -0.4 944,867 + PFR28_00874 0.74 -0.8 944,867 + PFR28_00874 0.74 -0.8 944,867 + PFR28_00874 0.74 +1.0 944,867 + PFR28_00874 0.74 +0.9 944,867 + PFR28_00874 0.74 -0.2 944,867 + PFR28_00874 0.74 +0.5 944,867 + PFR28_00874 0.74 -1.1 944,867 + PFR28_00874 0.74 -1.4 944,868 - PFR28_00874 0.74 -2.1 944,868 - PFR28_00874 0.74 +0.3 944,868 - PFR28_00874 0.74 -0.7 944,868 - PFR28_00874 0.74 -0.2 944,868 - PFR28_00874 0.74 +2.0 944,868 - PFR28_00874 0.74 +0.6 944,868 - PFR28_00874 0.74 -0.2 944,868 - PFR28_00874 0.74 -1.2 944,868 - PFR28_00874 0.74 -0.4 944,868 - PFR28_00874 0.74 -0.3 944,868 - PFR28_00874 0.74 -0.3 944,868 - PFR28_00874 0.74 +0.8 944,868 - PFR28_00874 0.74 -1.3 944,868 - PFR28_00874 0.74 +0.0 944,868 - PFR28_00874 0.74 +0.1 944,934 + -0.4 944,934 + +0.7 944,934 + -0.0 944,934 + +0.2 944,934 + +1.6 944,934 + +1.1 944,934 + +0.2 944,934 + -0.5 944,934 + -0.8 944,934 + +1.3 944,935 - -1.3 944,935 - +0.6 944,935 - +0.1 944,935 - -2.2 944,935 - +1.2 944,935 - -0.1 944,935 - +0.3 944,935 - +0.7 944,935 - +0.5 945,102 + +1.5 945,119 + -0.7 945,120 - +0.3 945,120 - -0.7 945,120 - +0.4 945,120 - -1.5 945,190 + +0.3 945,191 - +0.6 945,191 - -0.6 945,191 - +0.8 945,223 + -0.4 945,223 + +0.5 945,223 + +0.3 945,223 + +1.2 945,223 + +0.3 945,223 + -0.0 945,223 + -0.1 945,223 + +0.7 945,223 + +0.2 945,224 - +1.0 945,224 - -0.1 945,224 - -0.4 945,224 - +0.7 945,224 - -0.3 945,224 - -0.9 945,230 + +0.0 945,230 + +0.4 945,230 + -0.2 945,231 - +0.1 945,317 + +1.2 945,317 + +2.1 945,317 + +0.0 945,317 + -1.0 945,318 - -0.0 945,318 - -0.1 945,318 - -0.4 945,318 - -0.7 945,319 + +1.0 945,319 + +0.4 945,320 - +0.1 945,320 - -0.8 945,383 + -0.3 945,383 + -2.7 945,383 + -0.4 945,383 + -0.0 945,383 + -0.3 945,383 + -0.4 945,383 + +0.2 945,383 + -0.8 945,383 + -1.2 945,384 - -2.9 945,384 - +0.9 945,384 - -0.4 945,384 - -0.1 945,384 - +0.2 945,384 - -0.8 945,384 - +1.0 945,384 - -0.7 945,384 - -0.5 945,384 - +0.5 945,384 - -0.6 945,473 + PFR28_00875 0.11 +0.0 945,473 + PFR28_00875 0.11 +0.7 945,473 + PFR28_00875 0.11 +0.0 945,474 - PFR28_00875 0.11 +0.0 945,474 - PFR28_00875 0.11 -0.6 945,474 - PFR28_00875 0.11 +0.1
Or see this region's nucleotide sequence