Strain Fitness in Pseudomonas sp. RS175 around PFR28_00839

Experiment: trans-aconitic (C) 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFR28_00838 and PFR28_00839 are separated by 31 nucleotidesPFR28_00839 and PFR28_00840 are separated by 98 nucleotides PFR28_00838: PFR28_00838 - Sensor histidine kinase RcsC, at 911,180 to 912,886 _00838 PFR28_00839: PFR28_00839 - hypothetical protein, at 912,918 to 913,262 _00839 PFR28_00840: PFR28_00840 - hypothetical protein, at 913,361 to 914,734 _00840 Position (kb) 912 913 914Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 912.093 kb on + strand, within PFR28_00838at 912.094 kb on - strand, within PFR28_00838at 912.094 kb on - strand, within PFR28_00838at 912.141 kb on + strand, within PFR28_00838at 912.175 kb on + strand, within PFR28_00838at 912.176 kb on - strand, within PFR28_00838at 912.176 kb on - strand, within PFR28_00838at 912.365 kb on + strand, within PFR28_00838at 912.366 kb on - strand, within PFR28_00838at 912.455 kb on + strand, within PFR28_00838at 912.455 kb on + strand, within PFR28_00838at 912.455 kb on + strand, within PFR28_00838at 912.455 kb on + strand, within PFR28_00838at 912.512 kb on + strand, within PFR28_00838at 912.512 kb on + strand, within PFR28_00838at 912.513 kb on - strand, within PFR28_00838at 912.519 kb on + strand, within PFR28_00838at 912.519 kb on + strand, within PFR28_00838at 912.519 kb on + strand, within PFR28_00838at 912.520 kb on - strand, within PFR28_00838at 912.520 kb on - strand, within PFR28_00838at 912.533 kb on + strand, within PFR28_00838at 912.533 kb on + strand, within PFR28_00838at 912.533 kb on + strand, within PFR28_00838at 912.533 kb on + strand, within PFR28_00838at 912.534 kb on - strand, within PFR28_00838at 912.534 kb on - strand, within PFR28_00838at 912.534 kb on - strand, within PFR28_00838at 912.577 kb on + strand, within PFR28_00838at 912.577 kb on + strand, within PFR28_00838at 912.577 kb on + strand, within PFR28_00838at 912.578 kb on - strand, within PFR28_00838at 912.608 kb on + strand, within PFR28_00838at 912.608 kb on + strand, within PFR28_00838at 912.611 kb on + strand, within PFR28_00838at 912.611 kb on + strand, within PFR28_00838at 912.611 kb on + strand, within PFR28_00838at 912.611 kb on + strand, within PFR28_00838at 912.612 kb on - strand, within PFR28_00838at 912.612 kb on - strand, within PFR28_00838at 912.612 kb on - strand, within PFR28_00838at 912.612 kb on - strand, within PFR28_00838at 912.612 kb on - strand, within PFR28_00838at 912.673 kb on + strand, within PFR28_00838at 912.673 kb on + strand, within PFR28_00838at 912.673 kb on + strand, within PFR28_00838at 912.673 kb on + strand, within PFR28_00838at 912.673 kb on + strand, within PFR28_00838at 912.673 kb on + strand, within PFR28_00838at 912.674 kb on - strand, within PFR28_00838at 912.847 kb on + strandat 912.847 kb on + strandat 912.847 kb on + strandat 912.847 kb on + strandat 912.847 kb on + strandat 912.848 kb on - strandat 912.848 kb on - strandat 912.884 kb on + strandat 912.884 kb on + strandat 912.884 kb on + strandat 912.981 kb on + strand, within PFR28_00839at 912.981 kb on + strand, within PFR28_00839at 912.981 kb on + strand, within PFR28_00839at 912.982 kb on - strand, within PFR28_00839at 912.994 kb on + strand, within PFR28_00839at 912.994 kb on + strand, within PFR28_00839at 912.994 kb on + strand, within PFR28_00839at 912.994 kb on + strand, within PFR28_00839at 912.994 kb on + strand, within PFR28_00839at 912.994 kb on + strand, within PFR28_00839at 912.994 kb on + strand, within PFR28_00839at 912.994 kb on + strand, within PFR28_00839at 912.995 kb on - strand, within PFR28_00839at 912.995 kb on - strand, within PFR28_00839at 912.995 kb on - strand, within PFR28_00839at 912.995 kb on - strand, within PFR28_00839at 913.329 kb on + strandat 913.330 kb on - strandat 913.333 kb on + strandat 913.333 kb on + strandat 913.333 kb on + strandat 913.333 kb on + strandat 913.333 kb on + strandat 913.333 kb on + strandat 913.333 kb on + strandat 913.333 kb on + strandat 913.334 kb on - strandat 913.334 kb on - strandat 913.334 kb on - strandat 913.334 kb on - strandat 913.334 kb on - strandat 913.370 kb on - strandat 913.378 kb on + strandat 913.378 kb on + strandat 913.378 kb on + strandat 913.378 kb on + strandat 913.378 kb on + strandat 913.378 kb on + strandat 913.378 kb on + strandat 913.378 kb on + strandat 913.379 kb on - strandat 913.379 kb on - strandat 913.379 kb on - strandat 913.379 kb on - strandat 913.379 kb on - strandat 913.379 kb on - strandat 913.379 kb on - strandat 913.379 kb on - strandat 913.456 kb on + strandat 913.456 kb on + strandat 913.456 kb on + strandat 913.457 kb on - strandat 913.864 kb on - strand, within PFR28_00840at 913.864 kb on - strand, within PFR28_00840at 914.074 kb on + strand, within PFR28_00840at 914.074 kb on + strand, within PFR28_00840at 914.074 kb on + strand, within PFR28_00840at 914.074 kb on + strand, within PFR28_00840at 914.075 kb on - strand, within PFR28_00840at 914.075 kb on - strand, within PFR28_00840at 914.075 kb on - strand, within PFR28_00840at 914.075 kb on - strand, within PFR28_00840at 914.075 kb on - strand, within PFR28_00840at 914.075 kb on - strand, within PFR28_00840

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction trans-aconitic (C) 5 mM
remove
912,093 + PFR28_00838 0.53 -0.4
912,094 - PFR28_00838 0.54 -0.2
912,094 - PFR28_00838 0.54 +0.3
912,141 + PFR28_00838 0.56 +0.3
912,175 + PFR28_00838 0.58 +0.6
912,176 - PFR28_00838 0.58 -2.5
912,176 - PFR28_00838 0.58 -0.2
912,365 + PFR28_00838 0.69 +0.2
912,366 - PFR28_00838 0.69 -0.4
912,455 + PFR28_00838 0.75 -0.4
912,455 + PFR28_00838 0.75 +1.1
912,455 + PFR28_00838 0.75 -0.2
912,455 + PFR28_00838 0.75 +0.2
912,512 + PFR28_00838 0.78 +0.2
912,512 + PFR28_00838 0.78 -0.1
912,513 - PFR28_00838 0.78 -0.2
912,519 + PFR28_00838 0.78 +0.1
912,519 + PFR28_00838 0.78 -1.0
912,519 + PFR28_00838 0.78 -0.5
912,520 - PFR28_00838 0.79 +0.3
912,520 - PFR28_00838 0.79 +0.5
912,533 + PFR28_00838 0.79 +0.2
912,533 + PFR28_00838 0.79 +0.8
912,533 + PFR28_00838 0.79 +0.7
912,533 + PFR28_00838 0.79 +0.6
912,534 - PFR28_00838 0.79 -0.9
912,534 - PFR28_00838 0.79 +1.2
912,534 - PFR28_00838 0.79 -0.3
912,577 + PFR28_00838 0.82 +0.9
912,577 + PFR28_00838 0.82 -2.0
912,577 + PFR28_00838 0.82 -0.9
912,578 - PFR28_00838 0.82 +0.4
912,608 + PFR28_00838 0.84 +0.9
912,608 + PFR28_00838 0.84 +0.8
912,611 + PFR28_00838 0.84 +0.5
912,611 + PFR28_00838 0.84 -0.1
912,611 + PFR28_00838 0.84 +1.0
912,611 + PFR28_00838 0.84 -0.4
912,612 - PFR28_00838 0.84 +0.1
912,612 - PFR28_00838 0.84 +0.5
912,612 - PFR28_00838 0.84 +0.9
912,612 - PFR28_00838 0.84 -0.1
912,612 - PFR28_00838 0.84 -1.0
912,673 + PFR28_00838 0.87 +1.1
912,673 + PFR28_00838 0.87 -0.5
912,673 + PFR28_00838 0.87 +0.5
912,673 + PFR28_00838 0.87 +0.6
912,673 + PFR28_00838 0.87 +0.2
912,673 + PFR28_00838 0.87 +0.4
912,674 - PFR28_00838 0.88 -1.0
912,847 + +0.7
912,847 + -0.2
912,847 + +0.4
912,847 + +0.5
912,847 + +0.6
912,848 - -0.1
912,848 - +0.6
912,884 + +0.8
912,884 + +0.1
912,884 + +0.7
912,981 + PFR28_00839 0.18 -2.8
912,981 + PFR28_00839 0.18 -1.0
912,981 + PFR28_00839 0.18 -1.5
912,982 - PFR28_00839 0.19 -0.5
912,994 + PFR28_00839 0.22 -0.6
912,994 + PFR28_00839 0.22 -1.1
912,994 + PFR28_00839 0.22 -1.5
912,994 + PFR28_00839 0.22 -1.9
912,994 + PFR28_00839 0.22 +0.4
912,994 + PFR28_00839 0.22 -1.9
912,994 + PFR28_00839 0.22 +1.1
912,994 + PFR28_00839 0.22 -2.5
912,995 - PFR28_00839 0.22 -0.1
912,995 - PFR28_00839 0.22 -2.2
912,995 - PFR28_00839 0.22 -1.5
912,995 - PFR28_00839 0.22 -0.2
913,329 + +0.6
913,330 - -1.1
913,333 + +0.5
913,333 + +0.5
913,333 + +0.0
913,333 + -0.1
913,333 + -0.6
913,333 + +0.6
913,333 + +0.4
913,333 + +1.3
913,334 - -0.1
913,334 - -0.4
913,334 - -0.9
913,334 - -1.0
913,334 - -0.5
913,370 - -0.4
913,378 + +1.2
913,378 + -1.2
913,378 + +0.2
913,378 + +2.5
913,378 + +0.2
913,378 + -0.1
913,378 + +1.3
913,378 + +0.6
913,379 - +0.7
913,379 - -0.4
913,379 - -0.4
913,379 - -0.2
913,379 - -1.2
913,379 - -0.5
913,379 - +0.6
913,379 - -0.8
913,456 + +0.4
913,456 + +0.3
913,456 + +0.9
913,457 - +0.0
913,864 - PFR28_00840 0.37 -0.4
913,864 - PFR28_00840 0.37 -0.1
914,074 + PFR28_00840 0.52 +1.5
914,074 + PFR28_00840 0.52 -0.1
914,074 + PFR28_00840 0.52 +0.5
914,074 + PFR28_00840 0.52 +1.0
914,075 - PFR28_00840 0.52 +0.2
914,075 - PFR28_00840 0.52 -0.8
914,075 - PFR28_00840 0.52 +0.2
914,075 - PFR28_00840 0.52 +0.5
914,075 - PFR28_00840 0.52 -0.1
914,075 - PFR28_00840 0.52 +0.9

Or see this region's nucleotide sequence