Experiment: trans-aconitic (C) 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00686 and PFR28_00687 are separated by 150 nucleotides PFR28_00687 and PFR28_00688 overlap by 17 nucleotides PFR28_00688 and PFR28_00689 overlap by 32 nucleotides PFR28_00689 and PFR28_00690 are separated by 562 nucleotides
PFR28_00686: PFR28_00686 - tRNA-modifying protein YgfZ, at 729,358 to 730,299
_00686
PFR28_00687: PFR28_00687 - FAD assembly factor SdhE, at 730,450 to 730,704
_00687
PFR28_00688: PFR28_00688 - hypothetical protein, at 730,688 to 731,140
_00688
PFR28_00689: PFR28_00689 - L-aspartate oxidase, at 731,109 to 732,725
_00689
PFR28_00690: PFR28_00690 - RNA polymerase sigma-H factor, at 733,288 to 733,869
_00690
Position (kb) 731
732
733 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 730.336 kb on + strand at 730.336 kb on + strand at 730.336 kb on + strand at 730.336 kb on + strand at 730.336 kb on + strand at 730.337 kb on - strand at 730.359 kb on + strand at 730.359 kb on + strand at 730.359 kb on + strand at 730.359 kb on + strand at 730.359 kb on + strand at 730.360 kb on - strand at 730.360 kb on - strand at 730.360 kb on - strand at 730.360 kb on - strand at 730.360 kb on - strand at 730.360 kb on - strand at 730.420 kb on + strand at 730.420 kb on + strand at 730.420 kb on + strand at 730.420 kb on + strand at 730.420 kb on + strand at 730.420 kb on + strand at 730.421 kb on - strand at 730.422 kb on + strand at 730.422 kb on + strand at 730.422 kb on + strand at 730.422 kb on + strand at 730.422 kb on + strand at 730.422 kb on + strand at 730.422 kb on + strand at 730.422 kb on + strand at 730.433 kb on + strand at 730.702 kb on + strand at 730.702 kb on + strand at 730.702 kb on + strand at 730.702 kb on + strand at 730.702 kb on + strand at 730.702 kb on + strand at 730.703 kb on - strand at 730.703 kb on - strand at 730.703 kb on - strand at 730.752 kb on - strand, within PFR28_00688 at 730.752 kb on - strand, within PFR28_00688 at 730.752 kb on - strand, within PFR28_00688 at 731.119 kb on + strand at 731.119 kb on + strand at 731.120 kb on - strand at 731.139 kb on - strand at 731.182 kb on + strand at 731.182 kb on + strand at 731.182 kb on + strand at 731.183 kb on - strand at 731.183 kb on - strand at 731.183 kb on - strand at 731.183 kb on - strand at 731.183 kb on - strand at 731.183 kb on - strand at 731.183 kb on - strand at 731.284 kb on + strand, within PFR28_00689 at 731.284 kb on + strand, within PFR28_00689 at 731.284 kb on + strand, within PFR28_00689 at 731.284 kb on + strand, within PFR28_00689 at 731.284 kb on + strand, within PFR28_00689 at 731.284 kb on + strand, within PFR28_00689 at 731.285 kb on - strand, within PFR28_00689 at 731.285 kb on - strand, within PFR28_00689 at 731.285 kb on - strand, within PFR28_00689 at 731.285 kb on - strand, within PFR28_00689 at 731.285 kb on - strand, within PFR28_00689 at 731.285 kb on - strand, within PFR28_00689 at 731.285 kb on - strand, within PFR28_00689 at 731.285 kb on - strand, within PFR28_00689 at 731.288 kb on + strand, within PFR28_00689 at 731.288 kb on + strand, within PFR28_00689 at 731.288 kb on + strand, within PFR28_00689 at 731.289 kb on - strand, within PFR28_00689 at 731.289 kb on - strand, within PFR28_00689 at 731.289 kb on - strand, within PFR28_00689 at 731.289 kb on - strand, within PFR28_00689 at 731.289 kb on - strand, within PFR28_00689 at 731.289 kb on - strand, within PFR28_00689 at 731.294 kb on - strand, within PFR28_00689 at 731.294 kb on - strand, within PFR28_00689 at 731.294 kb on - strand, within PFR28_00689 at 731.294 kb on - strand, within PFR28_00689 at 731.378 kb on - strand, within PFR28_00689 at 731.378 kb on - strand, within PFR28_00689 at 731.533 kb on + strand, within PFR28_00689 at 731.534 kb on - strand, within PFR28_00689 at 731.614 kb on + strand, within PFR28_00689 at 731.614 kb on + strand, within PFR28_00689 at 731.615 kb on - strand, within PFR28_00689 at 731.615 kb on - strand, within PFR28_00689 at 731.615 kb on - strand, within PFR28_00689 at 731.671 kb on + strand, within PFR28_00689 at 731.671 kb on + strand, within PFR28_00689 at 731.740 kb on + strand, within PFR28_00689 at 731.740 kb on + strand, within PFR28_00689 at 731.740 kb on + strand, within PFR28_00689 at 731.741 kb on - strand, within PFR28_00689 at 731.797 kb on + strand, within PFR28_00689 at 731.797 kb on + strand, within PFR28_00689 at 731.798 kb on - strand, within PFR28_00689 at 731.798 kb on - strand, within PFR28_00689 at 731.981 kb on - strand, within PFR28_00689 at 731.981 kb on - strand, within PFR28_00689 at 732.086 kb on + strand, within PFR28_00689 at 732.086 kb on + strand, within PFR28_00689 at 732.086 kb on + strand, within PFR28_00689 at 732.086 kb on + strand, within PFR28_00689 at 732.086 kb on + strand, within PFR28_00689 at 732.086 kb on + strand, within PFR28_00689 at 732.087 kb on - strand, within PFR28_00689 at 732.087 kb on - strand, within PFR28_00689 at 732.087 kb on - strand, within PFR28_00689 at 732.087 kb on - strand, within PFR28_00689 at 732.087 kb on - strand, within PFR28_00689 at 732.088 kb on + strand, within PFR28_00689 at 732.088 kb on + strand, within PFR28_00689 at 732.088 kb on + strand, within PFR28_00689 at 732.088 kb on + strand, within PFR28_00689 at 732.088 kb on + strand, within PFR28_00689 at 732.089 kb on - strand, within PFR28_00689 at 732.089 kb on - strand, within PFR28_00689 at 732.089 kb on - strand, within PFR28_00689 at 732.089 kb on - strand, within PFR28_00689 at 732.094 kb on + strand, within PFR28_00689 at 732.094 kb on + strand, within PFR28_00689 at 732.095 kb on - strand, within PFR28_00689 at 732.142 kb on + strand, within PFR28_00689 at 732.142 kb on + strand, within PFR28_00689 at 732.142 kb on + strand, within PFR28_00689 at 732.142 kb on + strand, within PFR28_00689 at 732.142 kb on + strand, within PFR28_00689 at 732.142 kb on + strand, within PFR28_00689 at 732.143 kb on - strand, within PFR28_00689 at 732.143 kb on - strand, within PFR28_00689 at 732.143 kb on - strand, within PFR28_00689 at 732.147 kb on - strand, within PFR28_00689 at 732.178 kb on + strand, within PFR28_00689 at 732.178 kb on + strand, within PFR28_00689 at 732.178 kb on + strand, within PFR28_00689 at 732.178 kb on + strand, within PFR28_00689 at 732.178 kb on + strand, within PFR28_00689 at 732.178 kb on + strand, within PFR28_00689 at 732.178 kb on + strand, within PFR28_00689 at 732.178 kb on + strand, within PFR28_00689 at 732.178 kb on + strand, within PFR28_00689 at 732.178 kb on + strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.179 kb on - strand, within PFR28_00689 at 732.483 kb on + strand, within PFR28_00689 at 732.484 kb on - strand, within PFR28_00689 at 732.484 kb on - strand, within PFR28_00689 at 732.484 kb on - strand, within PFR28_00689 at 732.712 kb on + strand at 732.713 kb on - strand at 732.713 kb on - strand at 732.713 kb on - strand at 732.713 kb on - strand at 732.713 kb on - strand at 732.713 kb on - strand at 732.713 kb on - strand at 732.810 kb on + strand at 732.810 kb on + strand at 732.810 kb on + strand at 732.810 kb on + strand at 732.811 kb on - strand at 732.811 kb on - strand at 732.811 kb on - strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.813 kb on + strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.814 kb on - strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.815 kb on + strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.816 kb on - strand at 732.817 kb on + strand at 732.817 kb on + strand at 732.817 kb on + strand at 732.817 kb on + strand at 732.817 kb on + strand at 732.817 kb on + strand at 732.817 kb on + strand at 732.817 kb on + strand at 732.817 kb on + strand at 732.817 kb on + strand at 732.817 kb on + strand at 732.817 kb on + strand at 732.818 kb on - strand at 732.818 kb on - strand at 732.818 kb on - strand at 732.818 kb on - strand at 732.818 kb on - strand at 732.818 kb on - strand at 732.818 kb on - strand at 732.818 kb on - strand at 732.818 kb on - strand at 732.818 kb on - strand at 732.818 kb on - strand at 732.818 kb on - strand at 732.839 kb on - strand at 732.943 kb on + strand at 732.943 kb on + strand at 732.944 kb on - strand at 732.944 kb on - strand at 732.944 kb on - strand at 732.944 kb on - strand at 732.944 kb on - strand at 732.944 kb on - strand at 732.945 kb on + strand at 732.945 kb on + strand at 732.945 kb on + strand at 732.945 kb on + strand at 732.945 kb on + strand at 732.945 kb on + strand at 732.945 kb on + strand at 732.945 kb on + strand at 732.945 kb on + strand at 732.945 kb on + strand at 732.946 kb on - strand at 732.946 kb on - strand at 732.946 kb on - strand at 732.946 kb on - strand at 732.946 kb on - strand at 732.946 kb on - strand at 732.946 kb on - strand at 732.946 kb on - strand at 732.946 kb on - strand at 732.946 kb on - strand at 732.946 kb on - strand at 732.946 kb on - strand at 732.946 kb on - strand at 732.955 kb on + strand at 732.955 kb on + strand at 732.955 kb on + strand at 732.955 kb on + strand at 732.956 kb on - strand at 732.956 kb on - strand at 732.956 kb on - strand at 732.959 kb on + strand at 732.959 kb on + strand at 732.960 kb on - strand at 732.960 kb on - strand at 732.960 kb on - strand at 732.960 kb on - strand at 732.960 kb on - strand at 732.960 kb on - strand at 732.960 kb on - strand at 732.960 kb on - strand at 732.960 kb on - strand at 732.960 kb on - strand at 732.995 kb on + strand at 732.995 kb on + strand at 732.995 kb on + strand at 732.995 kb on + strand at 732.995 kb on + strand at 732.996 kb on - strand at 732.996 kb on - strand at 732.996 kb on - strand at 732.996 kb on - strand at 732.996 kb on - strand at 732.996 kb on - strand at 732.999 kb on + strand at 733.000 kb on - strand at 733.116 kb on + strand at 733.117 kb on - strand at 733.226 kb on + strand at 733.248 kb on + strand at 733.249 kb on - strand at 733.249 kb on - strand at 733.293 kb on - strand at 733.293 kb on - strand at 733.361 kb on + strand, within PFR28_00690 at 733.361 kb on + strand, within PFR28_00690 at 733.362 kb on - strand, within PFR28_00690 at 733.372 kb on + strand, within PFR28_00690 at 733.373 kb on - strand, within PFR28_00690 at 733.477 kb on - strand, within PFR28_00690 at 733.543 kb on + strand, within PFR28_00690 at 733.606 kb on + strand, within PFR28_00690 at 733.606 kb on + strand, within PFR28_00690 at 733.606 kb on + strand, within PFR28_00690 at 733.606 kb on + strand, within PFR28_00690 at 733.606 kb on + strand, within PFR28_00690 at 733.606 kb on + strand, within PFR28_00690 at 733.606 kb on + strand, within PFR28_00690 at 733.607 kb on - strand, within PFR28_00690 at 733.607 kb on - strand, within PFR28_00690 at 733.607 kb on - strand, within PFR28_00690 at 733.607 kb on - strand, within PFR28_00690
Per-strain Table
Position Strand Gene LocusTag Fraction trans-aconitic (C) 5 mM remove 730,336 + +0.1 730,336 + +1.2 730,336 + +0.3 730,336 + -0.5 730,336 + +0.5 730,337 - -0.6 730,359 + -0.1 730,359 + -0.2 730,359 + -0.9 730,359 + -0.2 730,359 + -1.1 730,360 - -0.8 730,360 - +0.1 730,360 - -1.1 730,360 - -0.4 730,360 - -0.3 730,360 - -0.8 730,420 + +0.3 730,420 + -0.7 730,420 + +0.8 730,420 + +0.6 730,420 + +0.1 730,420 + +0.2 730,421 - -0.7 730,422 + -0.3 730,422 + +0.2 730,422 + +0.5 730,422 + +0.0 730,422 + +1.3 730,422 + -0.3 730,422 + -0.4 730,422 + -0.1 730,433 + -0.5 730,702 + -1.1 730,702 + +1.5 730,702 + +0.4 730,702 + -0.1 730,702 + -0.4 730,702 + -0.1 730,703 - -0.5 730,703 - -0.7 730,703 - -0.3 730,752 - PFR28_00688 0.14 +0.2 730,752 - PFR28_00688 0.14 -1.1 730,752 - PFR28_00688 0.14 -1.4 731,119 + +0.1 731,119 + +1.5 731,120 - -1.3 731,139 - -1.9 731,182 + -0.6 731,182 + -1.9 731,182 + +0.5 731,183 - -2.0 731,183 - -0.2 731,183 - -1.0 731,183 - -1.4 731,183 - -0.5 731,183 - +1.3 731,183 - -1.8 731,284 + PFR28_00689 0.11 -1.7 731,284 + PFR28_00689 0.11 -0.7 731,284 + PFR28_00689 0.11 -0.7 731,284 + PFR28_00689 0.11 -1.8 731,284 + PFR28_00689 0.11 -0.8 731,284 + PFR28_00689 0.11 -0.6 731,285 - PFR28_00689 0.11 -0.5 731,285 - PFR28_00689 0.11 -1.7 731,285 - PFR28_00689 0.11 -1.2 731,285 - PFR28_00689 0.11 -1.6 731,285 - PFR28_00689 0.11 -0.5 731,285 - PFR28_00689 0.11 -0.4 731,285 - PFR28_00689 0.11 -0.3 731,285 - PFR28_00689 0.11 -1.0 731,288 + PFR28_00689 0.11 -2.4 731,288 + PFR28_00689 0.11 -0.8 731,288 + PFR28_00689 0.11 -0.7 731,289 - PFR28_00689 0.11 -0.9 731,289 - PFR28_00689 0.11 -4.3 731,289 - PFR28_00689 0.11 -0.6 731,289 - PFR28_00689 0.11 -0.9 731,289 - PFR28_00689 0.11 -0.2 731,289 - PFR28_00689 0.11 -1.4 731,294 - PFR28_00689 0.11 -0.3 731,294 - PFR28_00689 0.11 -0.8 731,294 - PFR28_00689 0.11 -2.8 731,294 - PFR28_00689 0.11 -2.3 731,378 - PFR28_00689 0.17 -0.5 731,378 - PFR28_00689 0.17 -0.6 731,533 + PFR28_00689 0.26 -2.6 731,534 - PFR28_00689 0.26 -1.0 731,614 + PFR28_00689 0.31 -1.3 731,614 + PFR28_00689 0.31 -1.1 731,615 - PFR28_00689 0.31 -0.8 731,615 - PFR28_00689 0.31 -1.0 731,615 - PFR28_00689 0.31 -0.3 731,671 + PFR28_00689 0.35 +0.1 731,671 + PFR28_00689 0.35 -1.5 731,740 + PFR28_00689 0.39 -1.1 731,740 + PFR28_00689 0.39 -0.4 731,740 + PFR28_00689 0.39 -0.8 731,741 - PFR28_00689 0.39 -1.0 731,797 + PFR28_00689 0.43 -1.5 731,797 + PFR28_00689 0.43 -2.3 731,798 - PFR28_00689 0.43 -0.8 731,798 - PFR28_00689 0.43 -0.4 731,981 - PFR28_00689 0.54 -1.2 731,981 - PFR28_00689 0.54 -1.9 732,086 + PFR28_00689 0.60 -1.0 732,086 + PFR28_00689 0.60 -1.8 732,086 + PFR28_00689 0.60 -0.6 732,086 + PFR28_00689 0.60 -1.7 732,086 + PFR28_00689 0.60 -0.7 732,086 + PFR28_00689 0.60 -1.7 732,087 - PFR28_00689 0.60 -0.6 732,087 - PFR28_00689 0.60 -2.7 732,087 - PFR28_00689 0.60 -0.3 732,087 - PFR28_00689 0.60 -1.1 732,087 - PFR28_00689 0.60 -0.8 732,088 + PFR28_00689 0.61 -0.5 732,088 + PFR28_00689 0.61 -0.4 732,088 + PFR28_00689 0.61 -0.7 732,088 + PFR28_00689 0.61 -1.9 732,088 + PFR28_00689 0.61 -1.7 732,089 - PFR28_00689 0.61 -1.4 732,089 - PFR28_00689 0.61 -0.3 732,089 - PFR28_00689 0.61 -1.6 732,089 - PFR28_00689 0.61 -2.1 732,094 + PFR28_00689 0.61 -0.7 732,094 + PFR28_00689 0.61 -1.5 732,095 - PFR28_00689 0.61 -0.4 732,142 + PFR28_00689 0.64 -1.1 732,142 + PFR28_00689 0.64 -0.1 732,142 + PFR28_00689 0.64 -0.3 732,142 + PFR28_00689 0.64 -1.2 732,142 + PFR28_00689 0.64 -0.5 732,142 + PFR28_00689 0.64 -0.8 732,143 - PFR28_00689 0.64 -0.9 732,143 - PFR28_00689 0.64 -1.3 732,143 - PFR28_00689 0.64 -0.6 732,147 - PFR28_00689 0.64 -1.5 732,178 + PFR28_00689 0.66 -1.2 732,178 + PFR28_00689 0.66 -0.8 732,178 + PFR28_00689 0.66 -1.0 732,178 + PFR28_00689 0.66 +2.1 732,178 + PFR28_00689 0.66 -0.9 732,178 + PFR28_00689 0.66 -0.9 732,178 + PFR28_00689 0.66 -0.7 732,178 + PFR28_00689 0.66 -1.3 732,178 + PFR28_00689 0.66 +0.3 732,178 + PFR28_00689 0.66 -0.6 732,179 - PFR28_00689 0.66 +0.6 732,179 - PFR28_00689 0.66 -1.8 732,179 - PFR28_00689 0.66 -0.9 732,179 - PFR28_00689 0.66 -1.2 732,179 - PFR28_00689 0.66 -1.7 732,179 - PFR28_00689 0.66 -1.1 732,179 - PFR28_00689 0.66 -0.6 732,179 - PFR28_00689 0.66 -2.3 732,179 - PFR28_00689 0.66 -0.5 732,179 - PFR28_00689 0.66 -1.0 732,179 - PFR28_00689 0.66 +0.6 732,179 - PFR28_00689 0.66 -1.8 732,179 - PFR28_00689 0.66 -1.5 732,179 - PFR28_00689 0.66 -0.7 732,179 - PFR28_00689 0.66 -2.2 732,483 + PFR28_00689 0.85 -2.0 732,484 - PFR28_00689 0.85 -0.6 732,484 - PFR28_00689 0.85 -2.0 732,484 - PFR28_00689 0.85 +0.6 732,712 + -1.7 732,713 - -0.3 732,713 - -2.0 732,713 - -0.4 732,713 - -0.5 732,713 - -1.5 732,713 - -0.0 732,713 - -0.3 732,810 + -0.5 732,810 + +0.2 732,810 + +0.2 732,810 + +0.1 732,811 - -1.5 732,811 - +1.3 732,811 - -1.2 732,813 + -0.4 732,813 + +0.8 732,813 + -0.2 732,813 + +0.7 732,813 + +0.7 732,813 + -0.1 732,813 + +0.2 732,813 + -0.3 732,813 + +0.2 732,813 + -0.2 732,813 + +1.5 732,813 + -0.5 732,813 + +0.3 732,813 + -1.3 732,813 + +1.0 732,813 + +1.3 732,813 + +0.0 732,813 + +0.1 732,813 + -0.6 732,813 + -0.6 732,813 + -0.2 732,813 + -1.2 732,813 + -1.3 732,813 + -0.0 732,813 + +0.1 732,813 + +0.0 732,814 - 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Or see this region's nucleotide sequence