Strain Fitness in Pseudomonas sp. RS175 around PFR28_00688

Experiment: trans-aconitic (C) 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00686 and PFR28_00687 are separated by 150 nucleotidesPFR28_00687 and PFR28_00688 overlap by 17 nucleotidesPFR28_00688 and PFR28_00689 overlap by 32 nucleotides PFR28_00686: PFR28_00686 - tRNA-modifying protein YgfZ, at 729,358 to 730,299 _00686 PFR28_00687: PFR28_00687 - FAD assembly factor SdhE, at 730,450 to 730,704 _00687 PFR28_00688: PFR28_00688 - hypothetical protein, at 730,688 to 731,140 _00688 PFR28_00689: PFR28_00689 - L-aspartate oxidase, at 731,109 to 732,725 _00689 Position (kb) 730 731 732Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 730.336 kb on + strandat 730.336 kb on + strandat 730.336 kb on + strandat 730.336 kb on + strandat 730.336 kb on + strandat 730.337 kb on - strandat 730.359 kb on + strandat 730.359 kb on + strandat 730.359 kb on + strandat 730.359 kb on + strandat 730.359 kb on + strandat 730.360 kb on - strandat 730.360 kb on - strandat 730.360 kb on - strandat 730.360 kb on - strandat 730.360 kb on - strandat 730.360 kb on - strandat 730.420 kb on + strandat 730.420 kb on + strandat 730.420 kb on + strandat 730.420 kb on + strandat 730.420 kb on + strandat 730.420 kb on + strandat 730.421 kb on - strandat 730.422 kb on + strandat 730.422 kb on + strandat 730.422 kb on + strandat 730.422 kb on + strandat 730.422 kb on + strandat 730.422 kb on + strandat 730.422 kb on + strandat 730.422 kb on + strandat 730.433 kb on + strandat 730.702 kb on + strandat 730.702 kb on + strandat 730.702 kb on + strandat 730.702 kb on + strandat 730.702 kb on + strandat 730.702 kb on + strandat 730.703 kb on - strandat 730.703 kb on - strandat 730.703 kb on - strandat 730.752 kb on - strand, within PFR28_00688at 730.752 kb on - strand, within PFR28_00688at 730.752 kb on - strand, within PFR28_00688at 731.119 kb on + strandat 731.119 kb on + strandat 731.120 kb on - strandat 731.139 kb on - strandat 731.182 kb on + strandat 731.182 kb on + strandat 731.182 kb on + strandat 731.183 kb on - strandat 731.183 kb on - strandat 731.183 kb on - strandat 731.183 kb on - strandat 731.183 kb on - strandat 731.183 kb on - strandat 731.183 kb on - strandat 731.284 kb on + strand, within PFR28_00689at 731.284 kb on + strand, within PFR28_00689at 731.284 kb on + strand, within PFR28_00689at 731.284 kb on + strand, within PFR28_00689at 731.284 kb on + strand, within PFR28_00689at 731.284 kb on + strand, within PFR28_00689at 731.285 kb on - strand, within PFR28_00689at 731.285 kb on - strand, within PFR28_00689at 731.285 kb on - strand, within PFR28_00689at 731.285 kb on - strand, within PFR28_00689at 731.285 kb on - strand, within PFR28_00689at 731.285 kb on - strand, within PFR28_00689at 731.285 kb on - strand, within PFR28_00689at 731.285 kb on - strand, within PFR28_00689at 731.288 kb on + strand, within PFR28_00689at 731.288 kb on + strand, within PFR28_00689at 731.288 kb on + strand, within PFR28_00689at 731.289 kb on - strand, within PFR28_00689at 731.289 kb on - strand, within PFR28_00689at 731.289 kb on - strand, within PFR28_00689at 731.289 kb on - strand, within PFR28_00689at 731.289 kb on - strand, within PFR28_00689at 731.289 kb on - strand, within PFR28_00689at 731.294 kb on - strand, within PFR28_00689at 731.294 kb on - strand, within PFR28_00689at 731.294 kb on - strand, within PFR28_00689at 731.294 kb on - strand, within PFR28_00689at 731.378 kb on - strand, within PFR28_00689at 731.378 kb on - strand, within PFR28_00689at 731.533 kb on + strand, within PFR28_00689at 731.534 kb on - strand, within PFR28_00689at 731.614 kb on + strand, within PFR28_00689at 731.614 kb on + strand, within PFR28_00689at 731.615 kb on - strand, within PFR28_00689at 731.615 kb on - strand, within PFR28_00689at 731.615 kb on - strand, within PFR28_00689at 731.671 kb on + strand, within PFR28_00689at 731.671 kb on + strand, within PFR28_00689at 731.740 kb on + strand, within PFR28_00689at 731.740 kb on + strand, within PFR28_00689at 731.740 kb on + strand, within PFR28_00689at 731.741 kb on - strand, within PFR28_00689at 731.797 kb on + strand, within PFR28_00689at 731.797 kb on + strand, within PFR28_00689at 731.798 kb on - strand, within PFR28_00689at 731.798 kb on - strand, within PFR28_00689at 731.981 kb on - strand, within PFR28_00689at 731.981 kb on - strand, within PFR28_00689at 732.086 kb on + strand, within PFR28_00689at 732.086 kb on + strand, within PFR28_00689at 732.086 kb on + strand, within PFR28_00689at 732.086 kb on + strand, within PFR28_00689at 732.086 kb on + strand, within PFR28_00689at 732.086 kb on + strand, within PFR28_00689at 732.087 kb on - strand, within PFR28_00689at 732.087 kb on - strand, within PFR28_00689at 732.087 kb on - strand, within PFR28_00689at 732.087 kb on - strand, within PFR28_00689at 732.087 kb on - strand, within PFR28_00689at 732.088 kb on + strand, within PFR28_00689at 732.088 kb on + strand, within PFR28_00689at 732.088 kb on + strand, within PFR28_00689at 732.088 kb on + strand, within PFR28_00689at 732.088 kb on + strand, within PFR28_00689at 732.089 kb on - strand, within PFR28_00689at 732.089 kb on - strand, within PFR28_00689at 732.089 kb on - strand, within PFR28_00689at 732.089 kb on - strand, within PFR28_00689at 732.094 kb on + strand, within PFR28_00689at 732.094 kb on + strand, within PFR28_00689at 732.095 kb on - strand, within PFR28_00689

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Per-strain Table

Position Strand Gene LocusTag Fraction trans-aconitic (C) 5 mM
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730,336 + +0.1
730,336 + +1.2
730,336 + +0.3
730,336 + -0.5
730,336 + +0.5
730,337 - -0.6
730,359 + -0.1
730,359 + -0.2
730,359 + -0.9
730,359 + -0.2
730,359 + -1.1
730,360 - -0.8
730,360 - +0.1
730,360 - -1.1
730,360 - -0.4
730,360 - -0.3
730,360 - -0.8
730,420 + +0.3
730,420 + -0.7
730,420 + +0.8
730,420 + +0.6
730,420 + +0.1
730,420 + +0.2
730,421 - -0.7
730,422 + -0.3
730,422 + +0.2
730,422 + +0.5
730,422 + +0.0
730,422 + +1.3
730,422 + -0.3
730,422 + -0.4
730,422 + -0.1
730,433 + -0.5
730,702 + -1.1
730,702 + +1.5
730,702 + +0.4
730,702 + -0.1
730,702 + -0.4
730,702 + -0.1
730,703 - -0.5
730,703 - -0.7
730,703 - -0.3
730,752 - PFR28_00688 0.14 +0.2
730,752 - PFR28_00688 0.14 -1.1
730,752 - PFR28_00688 0.14 -1.4
731,119 + +0.1
731,119 + +1.5
731,120 - -1.3
731,139 - -1.9
731,182 + -0.6
731,182 + -1.9
731,182 + +0.5
731,183 - -2.0
731,183 - -0.2
731,183 - -1.0
731,183 - -1.4
731,183 - -0.5
731,183 - +1.3
731,183 - -1.8
731,284 + PFR28_00689 0.11 -1.7
731,284 + PFR28_00689 0.11 -0.7
731,284 + PFR28_00689 0.11 -0.7
731,284 + PFR28_00689 0.11 -1.8
731,284 + PFR28_00689 0.11 -0.8
731,284 + PFR28_00689 0.11 -0.6
731,285 - PFR28_00689 0.11 -0.5
731,285 - PFR28_00689 0.11 -1.7
731,285 - PFR28_00689 0.11 -1.2
731,285 - PFR28_00689 0.11 -1.6
731,285 - PFR28_00689 0.11 -0.5
731,285 - PFR28_00689 0.11 -0.4
731,285 - PFR28_00689 0.11 -0.3
731,285 - PFR28_00689 0.11 -1.0
731,288 + PFR28_00689 0.11 -2.4
731,288 + PFR28_00689 0.11 -0.8
731,288 + PFR28_00689 0.11 -0.7
731,289 - PFR28_00689 0.11 -0.9
731,289 - PFR28_00689 0.11 -4.3
731,289 - PFR28_00689 0.11 -0.6
731,289 - PFR28_00689 0.11 -0.9
731,289 - PFR28_00689 0.11 -0.2
731,289 - PFR28_00689 0.11 -1.4
731,294 - PFR28_00689 0.11 -0.3
731,294 - PFR28_00689 0.11 -0.8
731,294 - PFR28_00689 0.11 -2.8
731,294 - PFR28_00689 0.11 -2.3
731,378 - PFR28_00689 0.17 -0.5
731,378 - PFR28_00689 0.17 -0.6
731,533 + PFR28_00689 0.26 -2.6
731,534 - PFR28_00689 0.26 -1.0
731,614 + PFR28_00689 0.31 -1.3
731,614 + PFR28_00689 0.31 -1.1
731,615 - PFR28_00689 0.31 -0.8
731,615 - PFR28_00689 0.31 -1.0
731,615 - PFR28_00689 0.31 -0.3
731,671 + PFR28_00689 0.35 +0.1
731,671 + PFR28_00689 0.35 -1.5
731,740 + PFR28_00689 0.39 -1.1
731,740 + PFR28_00689 0.39 -0.4
731,740 + PFR28_00689 0.39 -0.8
731,741 - PFR28_00689 0.39 -1.0
731,797 + PFR28_00689 0.43 -1.5
731,797 + PFR28_00689 0.43 -2.3
731,798 - PFR28_00689 0.43 -0.8
731,798 - PFR28_00689 0.43 -0.4
731,981 - PFR28_00689 0.54 -1.2
731,981 - PFR28_00689 0.54 -1.9
732,086 + PFR28_00689 0.60 -1.0
732,086 + PFR28_00689 0.60 -1.8
732,086 + PFR28_00689 0.60 -0.6
732,086 + PFR28_00689 0.60 -1.7
732,086 + PFR28_00689 0.60 -0.7
732,086 + PFR28_00689 0.60 -1.7
732,087 - PFR28_00689 0.60 -0.6
732,087 - PFR28_00689 0.60 -2.7
732,087 - PFR28_00689 0.60 -0.3
732,087 - PFR28_00689 0.60 -1.1
732,087 - PFR28_00689 0.60 -0.8
732,088 + PFR28_00689 0.61 -0.5
732,088 + PFR28_00689 0.61 -0.4
732,088 + PFR28_00689 0.61 -0.7
732,088 + PFR28_00689 0.61 -1.9
732,088 + PFR28_00689 0.61 -1.7
732,089 - PFR28_00689 0.61 -1.4
732,089 - PFR28_00689 0.61 -0.3
732,089 - PFR28_00689 0.61 -1.6
732,089 - PFR28_00689 0.61 -2.1
732,094 + PFR28_00689 0.61 -0.7
732,094 + PFR28_00689 0.61 -1.5
732,095 - PFR28_00689 0.61 -0.4

Or see this region's nucleotide sequence