Strain Fitness in Pseudomonas sp. RS175 around PFR28_00683

Experiment: trans-aconitic (C) 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00681 and PFR28_00682 are separated by 79 nucleotidesPFR28_00682 and PFR28_00683 are separated by 232 nucleotidesPFR28_00683 and PFR28_00684 overlap by 8 nucleotides PFR28_00681: PFR28_00681 - hypothetical protein, at 724,885 to 725,862 _00681 PFR28_00682: PFR28_00682 - hypothetical protein, at 725,942 to 726,127 _00682 PFR28_00683: PFR28_00683 - Transcriptional regulatory protein tctD, at 726,360 to 727,031 _00683 PFR28_00684: PFR28_00684 - Sensor protein QseC, at 727,024 to 728,415 _00684 Position (kb) 726 727 728Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 725.462 kb on + strand, within PFR28_00681at 725.462 kb on + strand, within PFR28_00681at 725.495 kb on + strand, within PFR28_00681at 725.495 kb on + strand, within PFR28_00681at 725.495 kb on + strand, within PFR28_00681at 725.496 kb on - strand, within PFR28_00681at 725.496 kb on - strand, within PFR28_00681at 725.496 kb on - strand, within PFR28_00681at 725.629 kb on + strand, within PFR28_00681at 725.629 kb on + strand, within PFR28_00681at 725.629 kb on + strand, within PFR28_00681at 725.639 kb on + strand, within PFR28_00681at 725.639 kb on + strand, within PFR28_00681at 725.639 kb on + strand, within PFR28_00681at 725.639 kb on + strand, within PFR28_00681at 725.639 kb on + strand, within PFR28_00681at 725.640 kb on - strand, within PFR28_00681at 725.640 kb on - strand, within PFR28_00681at 725.640 kb on - strand, within PFR28_00681at 725.669 kb on + strand, within PFR28_00681at 725.669 kb on + strand, within PFR28_00681at 725.669 kb on + strand, within PFR28_00681at 725.669 kb on + strand, within PFR28_00681at 725.669 kb on + strand, within PFR28_00681at 725.669 kb on + strand, within PFR28_00681at 725.669 kb on + strand, within PFR28_00681at 725.669 kb on + strand, within PFR28_00681at 725.669 kb on + strand, within PFR28_00681at 725.669 kb on + strand, within PFR28_00681at 725.669 kb on + strand, within PFR28_00681at 725.669 kb on + strand, within PFR28_00681at 725.670 kb on - strand, within PFR28_00681at 725.670 kb on - strand, within PFR28_00681at 725.670 kb on - strand, within PFR28_00681at 725.670 kb on - strand, within PFR28_00681at 725.670 kb on - strand, within PFR28_00681at 725.670 kb on - strand, within PFR28_00681at 725.670 kb on - strand, within PFR28_00681at 725.670 kb on - strand, within PFR28_00681at 725.670 kb on - strand, within PFR28_00681at 725.845 kb on - strandat 725.863 kb on + strandat 725.864 kb on - strandat 725.864 kb on - strandat 725.864 kb on - strandat 725.943 kb on + strandat 725.943 kb on + strandat 725.944 kb on - strandat 725.944 kb on - strandat 725.944 kb on - strandat 725.944 kb on - strandat 725.944 kb on - strandat 725.944 kb on - strandat 726.018 kb on + strand, within PFR28_00682at 726.018 kb on + strand, within PFR28_00682at 726.018 kb on + strand, within PFR28_00682at 726.018 kb on + strand, within PFR28_00682at 726.018 kb on + strand, within PFR28_00682at 726.018 kb on + strand, within PFR28_00682at 726.019 kb on - strand, within PFR28_00682at 726.019 kb on - strand, within PFR28_00682at 726.019 kb on - strand, within PFR28_00682at 726.019 kb on - strand, within PFR28_00682at 726.019 kb on - strand, within PFR28_00682at 726.019 kb on - strand, within PFR28_00682at 726.019 kb on - strand, within PFR28_00682at 726.019 kb on - strand, within PFR28_00682at 726.019 kb on - strand, within PFR28_00682at 726.024 kb on + strand, within PFR28_00682at 726.024 kb on + strand, within PFR28_00682at 726.024 kb on + strand, within PFR28_00682at 726.025 kb on - strand, within PFR28_00682at 726.025 kb on - strand, within PFR28_00682at 726.025 kb on - strand, within PFR28_00682at 726.025 kb on - strand, within PFR28_00682at 726.134 kb on + strandat 726.134 kb on + strandat 726.134 kb on + strandat 726.134 kb on + strandat 726.135 kb on - strandat 726.135 kb on - strandat 726.144 kb on + strandat 726.145 kb on - strandat 726.145 kb on - strandat 726.145 kb on - strandat 726.153 kb on + strandat 726.217 kb on - strandat 726.217 kb on - strandat 726.232 kb on + strandat 726.232 kb on + strandat 726.252 kb on - strandat 726.355 kb on + strandat 726.355 kb on + strandat 726.355 kb on + strandat 726.356 kb on - strandat 726.356 kb on - strandat 726.356 kb on - strandat 726.356 kb on - strandat 726.492 kb on + strand, within PFR28_00683at 726.493 kb on - strand, within PFR28_00683at 726.514 kb on + strand, within PFR28_00683at 726.515 kb on - strand, within PFR28_00683at 726.515 kb on - strand, within PFR28_00683at 726.760 kb on - strand, within PFR28_00683at 726.760 kb on - strand, within PFR28_00683at 726.760 kb on - strand, within PFR28_00683at 726.760 kb on - strand, within PFR28_00683at 726.760 kb on - strand, within PFR28_00683at 726.760 kb on - strand, within PFR28_00683at 726.937 kb on - strand, within PFR28_00683at 726.937 kb on - strand, within PFR28_00683at 726.937 kb on - strand, within PFR28_00683at 727.006 kb on - strandat 727.029 kb on + strandat 727.029 kb on + strandat 727.030 kb on - strandat 727.030 kb on - strandat 727.030 kb on - strandat 727.030 kb on - strandat 727.030 kb on - strandat 727.214 kb on + strand, within PFR28_00684at 727.215 kb on - strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.231 kb on + strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.232 kb on - strand, within PFR28_00684at 727.276 kb on + strand, within PFR28_00684at 727.276 kb on + strand, within PFR28_00684at 727.276 kb on + strand, within PFR28_00684at 727.276 kb on + strand, within PFR28_00684at 727.276 kb on + strand, within PFR28_00684at 727.276 kb on + strand, within PFR28_00684at 727.276 kb on + strand, within PFR28_00684at 727.276 kb on + strand, within PFR28_00684at 727.276 kb on + strand, within PFR28_00684at 727.276 kb on + strand, within PFR28_00684at 727.276 kb on + strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.277 kb on - strand, within PFR28_00684at 727.279 kb on + strand, within PFR28_00684at 727.279 kb on + strand, within PFR28_00684at 727.280 kb on - strand, within PFR28_00684at 727.387 kb on + strand, within PFR28_00684at 727.388 kb on - strand, within PFR28_00684at 727.388 kb on - strand, within PFR28_00684at 727.388 kb on - strand, within PFR28_00684at 727.399 kb on + strand, within PFR28_00684at 727.399 kb on + strand, within PFR28_00684at 727.399 kb on + strand, within PFR28_00684at 727.400 kb on - strand, within PFR28_00684at 727.400 kb on - strand, within PFR28_00684at 727.400 kb on - strand, within PFR28_00684at 727.400 kb on - strand, within PFR28_00684at 727.694 kb on + strand, within PFR28_00684at 727.694 kb on + strand, within PFR28_00684at 727.695 kb on - strand, within PFR28_00684at 727.695 kb on - strand, within PFR28_00684at 727.695 kb on - strand, within PFR28_00684

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Per-strain Table

Position Strand Gene LocusTag Fraction trans-aconitic (C) 5 mM
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725,462 + PFR28_00681 0.59 -0.6
725,462 + PFR28_00681 0.59 +0.1
725,495 + PFR28_00681 0.62 -0.7
725,495 + PFR28_00681 0.62 +0.5
725,495 + PFR28_00681 0.62 +0.2
725,496 - PFR28_00681 0.62 -0.9
725,496 - PFR28_00681 0.62 -1.1
725,496 - PFR28_00681 0.62 +1.5
725,629 + PFR28_00681 0.76 -2.5
725,629 + PFR28_00681 0.76 -0.1
725,629 + PFR28_00681 0.76 -1.4
725,639 + PFR28_00681 0.77 -0.2
725,639 + PFR28_00681 0.77 -1.4
725,639 + PFR28_00681 0.77 -0.4
725,639 + PFR28_00681 0.77 -0.6
725,639 + PFR28_00681 0.77 -1.1
725,640 - PFR28_00681 0.77 +0.4
725,640 - PFR28_00681 0.77 -0.4
725,640 - PFR28_00681 0.77 -1.7
725,669 + PFR28_00681 0.80 -1.2
725,669 + PFR28_00681 0.80 -1.5
725,669 + PFR28_00681 0.80 -2.7
725,669 + PFR28_00681 0.80 -1.7
725,669 + PFR28_00681 0.80 -1.7
725,669 + PFR28_00681 0.80 -1.2
725,669 + PFR28_00681 0.80 +0.3
725,669 + PFR28_00681 0.80 -0.2
725,669 + PFR28_00681 0.80 -0.4
725,669 + PFR28_00681 0.80 -1.0
725,669 + PFR28_00681 0.80 -1.5
725,669 + PFR28_00681 0.80 +0.3
725,670 - PFR28_00681 0.80 -1.9
725,670 - PFR28_00681 0.80 -1.7
725,670 - PFR28_00681 0.80 -1.3
725,670 - PFR28_00681 0.80 -0.8
725,670 - PFR28_00681 0.80 -0.9
725,670 - PFR28_00681 0.80 -1.7
725,670 - PFR28_00681 0.80 -0.3
725,670 - PFR28_00681 0.80 -1.1
725,670 - PFR28_00681 0.80 -0.2
725,845 - -0.3
725,863 + -1.7
725,864 - -1.4
725,864 - -1.7
725,864 - +2.0
725,943 + -0.0
725,943 + -1.8
725,944 - -0.6
725,944 - -1.4
725,944 - -1.5
725,944 - -0.1
725,944 - +0.6
725,944 - -0.1
726,018 + PFR28_00682 0.41 -0.9
726,018 + PFR28_00682 0.41 +0.5
726,018 + PFR28_00682 0.41 -1.3
726,018 + PFR28_00682 0.41 +0.7
726,018 + PFR28_00682 0.41 +0.3
726,018 + PFR28_00682 0.41 -0.7
726,019 - PFR28_00682 0.41 -0.9
726,019 - PFR28_00682 0.41 -0.3
726,019 - PFR28_00682 0.41 +0.4
726,019 - PFR28_00682 0.41 -0.3
726,019 - PFR28_00682 0.41 -1.1
726,019 - PFR28_00682 0.41 +0.5
726,019 - PFR28_00682 0.41 -1.1
726,019 - PFR28_00682 0.41 -0.8
726,019 - PFR28_00682 0.41 +1.0
726,024 + PFR28_00682 0.44 -1.5
726,024 + PFR28_00682 0.44 -1.0
726,024 + PFR28_00682 0.44 -0.5
726,025 - PFR28_00682 0.45 +0.1
726,025 - PFR28_00682 0.45 +0.2
726,025 - PFR28_00682 0.45 +1.9
726,025 - PFR28_00682 0.45 +0.5
726,134 + -1.3
726,134 + -0.5
726,134 + -1.0
726,134 + -0.6
726,135 - -0.2
726,135 - -0.1
726,144 + -0.5
726,145 - -0.2
726,145 - +0.3
726,145 - -3.0
726,153 + -2.0
726,217 - -0.3
726,217 - +0.2
726,232 + -2.1
726,232 + -2.1
726,252 - -1.2
726,355 + -0.0
726,355 + -0.0
726,355 + -0.5
726,356 - -1.7
726,356 - -0.5
726,356 - -1.1
726,356 - +0.8
726,492 + PFR28_00683 0.20 -0.3
726,493 - PFR28_00683 0.20 -0.8
726,514 + PFR28_00683 0.23 -1.5
726,515 - PFR28_00683 0.23 -0.4
726,515 - PFR28_00683 0.23 +0.7
726,760 - PFR28_00683 0.60 -1.7
726,760 - PFR28_00683 0.60 -0.5
726,760 - PFR28_00683 0.60 +0.6
726,760 - PFR28_00683 0.60 +0.8
726,760 - PFR28_00683 0.60 -1.9
726,760 - PFR28_00683 0.60 -2.8
726,937 - PFR28_00683 0.86 -0.4
726,937 - PFR28_00683 0.86 -1.0
726,937 - PFR28_00683 0.86 -0.3
727,006 - -1.8
727,029 + +0.5
727,029 + +0.7
727,030 - -0.6
727,030 - -1.3
727,030 - -0.8
727,030 - -1.5
727,030 - -3.0
727,214 + PFR28_00684 0.14 +0.1
727,215 - PFR28_00684 0.14 -0.7
727,231 + PFR28_00684 0.15 -2.4
727,231 + PFR28_00684 0.15 +0.1
727,231 + PFR28_00684 0.15 -0.1
727,231 + PFR28_00684 0.15 -0.9
727,231 + PFR28_00684 0.15 -0.1
727,231 + PFR28_00684 0.15 -0.2
727,231 + PFR28_00684 0.15 -0.3
727,231 + PFR28_00684 0.15 -0.3
727,231 + PFR28_00684 0.15 -0.2
727,231 + PFR28_00684 0.15 -0.8
727,231 + PFR28_00684 0.15 -1.0
727,231 + PFR28_00684 0.15 -0.6
727,231 + PFR28_00684 0.15 -1.2
727,231 + PFR28_00684 0.15 -1.0
727,231 + PFR28_00684 0.15 -0.3
727,231 + PFR28_00684 0.15 -0.3
727,232 - PFR28_00684 0.15 -2.1
727,232 - PFR28_00684 0.15 -0.2
727,232 - PFR28_00684 0.15 +0.0
727,232 - PFR28_00684 0.15 +0.7
727,232 - PFR28_00684 0.15 -2.0
727,232 - PFR28_00684 0.15 -0.5
727,232 - PFR28_00684 0.15 -1.1
727,232 - PFR28_00684 0.15 -0.7
727,232 - PFR28_00684 0.15 -0.2
727,232 - PFR28_00684 0.15 +0.3
727,232 - PFR28_00684 0.15 -1.5
727,232 - PFR28_00684 0.15 -0.8
727,232 - PFR28_00684 0.15 -2.3
727,232 - PFR28_00684 0.15 -0.6
727,232 - PFR28_00684 0.15 -1.3
727,232 - PFR28_00684 0.15 -2.1
727,276 + PFR28_00684 0.18 -1.3
727,276 + PFR28_00684 0.18 -0.8
727,276 + PFR28_00684 0.18 -0.5
727,276 + PFR28_00684 0.18 -0.1
727,276 + PFR28_00684 0.18 -1.9
727,276 + PFR28_00684 0.18 -1.7
727,276 + PFR28_00684 0.18 -0.8
727,276 + PFR28_00684 0.18 +0.4
727,276 + PFR28_00684 0.18 -2.9
727,276 + PFR28_00684 0.18 -1.3
727,276 + PFR28_00684 0.18 -0.1
727,277 - PFR28_00684 0.18 -0.8
727,277 - PFR28_00684 0.18 -0.3
727,277 - PFR28_00684 0.18 -1.1
727,277 - PFR28_00684 0.18 -2.9
727,277 - PFR28_00684 0.18 -0.6
727,277 - PFR28_00684 0.18 +0.1
727,277 - PFR28_00684 0.18 -0.2
727,277 - PFR28_00684 0.18 -1.4
727,277 - PFR28_00684 0.18 -0.1
727,277 - PFR28_00684 0.18 -1.5
727,277 - PFR28_00684 0.18 -1.3
727,277 - PFR28_00684 0.18 -0.3
727,277 - PFR28_00684 0.18 -1.2
727,277 - PFR28_00684 0.18 -0.8
727,277 - PFR28_00684 0.18 -0.7
727,277 - PFR28_00684 0.18 -0.3
727,277 - PFR28_00684 0.18 -1.1
727,277 - PFR28_00684 0.18 -0.3
727,279 + PFR28_00684 0.18 -1.4
727,279 + PFR28_00684 0.18 -0.7
727,280 - PFR28_00684 0.18 -1.3
727,387 + PFR28_00684 0.26 -1.4
727,388 - PFR28_00684 0.26 -0.8
727,388 - PFR28_00684 0.26 -0.2
727,388 - PFR28_00684 0.26 -1.8
727,399 + PFR28_00684 0.27 +0.0
727,399 + PFR28_00684 0.27 -1.8
727,399 + PFR28_00684 0.27 -1.6
727,400 - PFR28_00684 0.27 -1.7
727,400 - PFR28_00684 0.27 +0.1
727,400 - PFR28_00684 0.27 +0.3
727,400 - PFR28_00684 0.27 -1.8
727,694 + PFR28_00684 0.48 -0.9
727,694 + PFR28_00684 0.48 +0.2
727,695 - PFR28_00684 0.48 -1.3
727,695 - PFR28_00684 0.48 -0.9
727,695 - PFR28_00684 0.48 +0.5

Or see this region's nucleotide sequence