Experiment: trans-aconitic (C) 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00538 and PFR28_00539 overlap by 4 nucleotides PFR28_00539 and PFR28_00540 are separated by 342 nucleotides
PFR28_00538: PFR28_00538 - hypothetical protein, at 571,188 to 572,453
_00538
PFR28_00539: PFR28_00539 - High-affinity branched-chain amino acid transport system permease protein LivH, at 572,450 to 573,373
_00539
PFR28_00540: PFR28_00540 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 573,716 to 574,843
_00540
Position (kb) 572
573
574 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 571.660 kb on + strand, within PFR28_00538 at 571.661 kb on - strand, within PFR28_00538 at 571.661 kb on - strand, within PFR28_00538 at 571.690 kb on + strand, within PFR28_00538 at 571.691 kb on - strand, within PFR28_00538 at 571.691 kb on - strand, within PFR28_00538 at 571.691 kb on - strand, within PFR28_00538 at 571.691 kb on - strand, within PFR28_00538 at 571.976 kb on - strand, within PFR28_00538 at 571.976 kb on - strand, within PFR28_00538 at 571.976 kb on - strand, within PFR28_00538 at 571.976 kb on - strand, within PFR28_00538 at 571.993 kb on + strand, within PFR28_00538 at 571.994 kb on - strand, within PFR28_00538 at 571.999 kb on + strand, within PFR28_00538 at 572.000 kb on - strand, within PFR28_00538 at 572.026 kb on + strand, within PFR28_00538 at 572.026 kb on + strand, within PFR28_00538 at 572.027 kb on - strand, within PFR28_00538 at 572.089 kb on + strand, within PFR28_00538 at 572.089 kb on + strand, within PFR28_00538 at 572.089 kb on + strand, within PFR28_00538 at 572.089 kb on + strand, within PFR28_00538 at 572.089 kb on + strand, within PFR28_00538 at 572.089 kb on + strand, within PFR28_00538 at 572.089 kb on + strand, within PFR28_00538 at 572.089 kb on + strand, within PFR28_00538 at 572.089 kb on + strand, within PFR28_00538 at 572.089 kb on + strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.090 kb on - strand, within PFR28_00538 at 572.299 kb on - strand, within PFR28_00538 at 572.299 kb on - strand, within PFR28_00538 at 572.299 kb on - strand, within PFR28_00538 at 572.438 kb on + strand at 572.439 kb on - strand at 572.439 kb on - strand at 572.439 kb on - strand at 572.443 kb on + strand at 572.443 kb on + strand at 572.444 kb on - strand at 572.444 kb on - strand at 572.444 kb on - strand at 572.453 kb on + strand at 572.454 kb on - strand at 572.454 kb on - strand at 572.454 kb on - strand at 572.541 kb on + strand at 572.541 kb on + strand at 572.541 kb on + strand at 572.541 kb on + strand at 572.541 kb on + strand at 572.541 kb on + strand at 572.542 kb on - strand at 572.542 kb on - strand at 572.542 kb on - strand at 572.542 kb on - strand at 572.542 kb on - strand at 572.557 kb on + strand, within PFR28_00539 at 572.715 kb on - strand, within PFR28_00539 at 572.913 kb on + strand, within PFR28_00539 at 572.913 kb on + strand, within PFR28_00539 at 572.913 kb on + strand, within PFR28_00539 at 572.913 kb on + strand, within PFR28_00539 at 572.913 kb on + strand, within PFR28_00539 at 572.913 kb on + strand, within PFR28_00539 at 572.913 kb on + strand, within PFR28_00539 at 572.913 kb on + strand, within PFR28_00539 at 572.913 kb on + strand, within PFR28_00539 at 572.913 kb on + strand, within PFR28_00539 at 572.913 kb on + strand, within PFR28_00539 at 572.914 kb on - strand, within PFR28_00539 at 572.914 kb on - strand, within PFR28_00539 at 572.914 kb on - strand, within PFR28_00539 at 573.011 kb on + strand, within PFR28_00539 at 573.011 kb on + strand, within PFR28_00539 at 573.011 kb on + strand, within PFR28_00539 at 573.012 kb on - strand, within PFR28_00539 at 573.012 kb on - strand, within PFR28_00539 at 573.012 kb on - strand, within PFR28_00539 at 573.012 kb on - strand, within PFR28_00539 at 573.029 kb on + strand, within PFR28_00539 at 573.029 kb on + strand, within PFR28_00539 at 573.091 kb on - strand, within PFR28_00539 at 573.106 kb on + strand, within PFR28_00539 at 573.106 kb on + strand, within PFR28_00539 at 573.107 kb on - strand, within PFR28_00539 at 573.111 kb on + strand, within PFR28_00539 at 573.111 kb on + strand, within PFR28_00539 at 573.111 kb on + strand, within PFR28_00539 at 573.112 kb on - strand, within PFR28_00539 at 573.112 kb on - strand, within PFR28_00539 at 573.112 kb on - strand, within PFR28_00539 at 573.112 kb on - strand, within PFR28_00539 at 573.117 kb on + strand, within PFR28_00539 at 573.117 kb on + strand, within PFR28_00539 at 573.118 kb on - strand, within PFR28_00539 at 573.118 kb on - strand, within PFR28_00539 at 573.118 kb on - strand, within PFR28_00539 at 573.118 kb on - strand, within PFR28_00539 at 573.222 kb on + strand, within PFR28_00539 at 573.222 kb on + strand, within PFR28_00539 at 573.223 kb on - strand, within PFR28_00539 at 573.223 kb on - strand, within PFR28_00539 at 573.223 kb on - strand, within PFR28_00539 at 573.223 kb on - strand, within PFR28_00539 at 573.237 kb on + strand, within PFR28_00539 at 573.237 kb on + strand, within PFR28_00539 at 573.237 kb on + strand, within PFR28_00539 at 573.237 kb on + strand, within PFR28_00539 at 573.237 kb on + strand, within PFR28_00539 at 573.237 kb on + strand, within PFR28_00539 at 573.238 kb on - strand, within PFR28_00539 at 573.238 kb on - strand, within PFR28_00539 at 573.238 kb on - strand, within PFR28_00539 at 573.238 kb on - strand, within PFR28_00539 at 573.238 kb on - strand, within PFR28_00539 at 573.238 kb on - strand, within PFR28_00539 at 573.238 kb on - strand, within PFR28_00539 at 573.260 kb on - strand, within PFR28_00539 at 573.279 kb on + strand, within PFR28_00539 at 573.279 kb on + strand, within PFR28_00539 at 573.280 kb on - strand, within PFR28_00539 at 573.291 kb on + strand at 573.291 kb on + strand at 573.312 kb on + strand at 573.312 kb on + strand at 573.313 kb on - strand at 573.313 kb on - strand at 573.313 kb on - strand at 573.313 kb on - strand at 573.313 kb on - strand at 573.313 kb on - strand at 573.360 kb on + strand at 573.361 kb on - strand at 573.361 kb on - strand at 573.374 kb on + strand at 573.375 kb on - strand at 573.375 kb on - strand at 573.385 kb on + strand at 573.385 kb on + strand at 573.385 kb on + strand at 573.385 kb on + strand at 573.494 kb on - strand at 573.540 kb on + strand at 573.541 kb on - strand at 573.549 kb on + strand at 573.550 kb on - strand at 573.550 kb on - strand at 573.610 kb on + strand at 573.610 kb on + strand at 573.610 kb on + strand at 573.611 kb on - strand at 573.611 kb on - strand at 573.611 kb on - strand at 573.634 kb on + strand at 573.634 kb on + strand at 573.634 kb on + strand at 573.662 kb on + strand at 573.663 kb on - strand at 573.687 kb on + strand at 573.687 kb on + strand at 573.687 kb on + strand at 573.687 kb on + strand at 573.687 kb on + strand at 573.687 kb on + strand at 573.687 kb on + strand at 573.687 kb on + strand at 573.687 kb on + strand at 573.687 kb on + strand at 573.688 kb on - strand at 573.688 kb on - strand at 573.688 kb on - strand at 573.688 kb on - strand at 573.688 kb on - strand at 573.688 kb on - strand at 573.688 kb on - strand at 573.688 kb on - strand at 573.688 kb on - strand at 573.688 kb on - strand at 573.688 kb on - strand at 573.717 kb on + strand at 573.717 kb on + strand at 573.718 kb on - strand at 573.762 kb on + strand at 573.763 kb on - strand at 573.763 kb on - strand at 574.167 kb on + strand, within PFR28_00540 at 574.167 kb on + strand, within PFR28_00540 at 574.167 kb on + strand, within PFR28_00540 at 574.167 kb on + strand, within PFR28_00540 at 574.168 kb on - strand, within PFR28_00540 at 574.168 kb on - strand, within PFR28_00540 at 574.168 kb on - strand, within PFR28_00540 at 574.171 kb on - strand, within PFR28_00540 at 574.303 kb on + strand, within PFR28_00540 at 574.304 kb on - strand, within PFR28_00540 at 574.314 kb on + strand, within PFR28_00540 at 574.314 kb on + strand, within PFR28_00540 at 574.314 kb on + strand, within PFR28_00540 at 574.314 kb on + strand, within PFR28_00540 at 574.315 kb on - strand, within PFR28_00540 at 574.315 kb on - strand, within PFR28_00540 at 574.371 kb on + strand, within PFR28_00540 at 574.371 kb on + strand, within PFR28_00540 at 574.371 kb on + strand, within PFR28_00540 at 574.371 kb on + strand, within PFR28_00540 at 574.371 kb on + strand, within PFR28_00540 at 574.371 kb on + strand, within PFR28_00540 at 574.371 kb on + strand, within PFR28_00540 at 574.372 kb on - strand, within PFR28_00540 at 574.372 kb on - strand, within PFR28_00540 at 574.372 kb on - strand, within PFR28_00540 at 574.372 kb on - strand, within PFR28_00540 at 574.372 kb on - strand, within PFR28_00540 at 574.372 kb on - strand, within PFR28_00540
Per-strain Table
Position Strand Gene LocusTag Fraction trans-aconitic (C) 5 mM remove 571,660 + PFR28_00538 0.37 +0.4 571,661 - PFR28_00538 0.37 +0.8 571,661 - PFR28_00538 0.37 -1.5 571,690 + PFR28_00538 0.40 +1.0 571,691 - PFR28_00538 0.40 +0.4 571,691 - PFR28_00538 0.40 +0.5 571,691 - PFR28_00538 0.40 -0.5 571,691 - PFR28_00538 0.40 -0.6 571,976 - PFR28_00538 0.62 +0.8 571,976 - PFR28_00538 0.62 -0.6 571,976 - PFR28_00538 0.62 -0.5 571,976 - PFR28_00538 0.62 -0.9 571,993 + PFR28_00538 0.64 -0.2 571,994 - PFR28_00538 0.64 -0.9 571,999 + PFR28_00538 0.64 -0.1 572,000 - PFR28_00538 0.64 -0.3 572,026 + PFR28_00538 0.66 -0.1 572,026 + PFR28_00538 0.66 +0.2 572,027 - PFR28_00538 0.66 -0.6 572,089 + PFR28_00538 0.71 +0.8 572,089 + PFR28_00538 0.71 -0.4 572,089 + PFR28_00538 0.71 -0.1 572,089 + PFR28_00538 0.71 +0.2 572,089 + PFR28_00538 0.71 +0.9 572,089 + PFR28_00538 0.71 -0.8 572,089 + PFR28_00538 0.71 +0.9 572,089 + PFR28_00538 0.71 +0.3 572,089 + PFR28_00538 0.71 -0.4 572,089 + PFR28_00538 0.71 -0.6 572,090 - PFR28_00538 0.71 -1.2 572,090 - PFR28_00538 0.71 -0.1 572,090 - PFR28_00538 0.71 +0.2 572,090 - PFR28_00538 0.71 -0.6 572,090 - PFR28_00538 0.71 +0.8 572,090 - PFR28_00538 0.71 +0.8 572,090 - PFR28_00538 0.71 +0.4 572,090 - PFR28_00538 0.71 -1.0 572,090 - PFR28_00538 0.71 -0.5 572,090 - PFR28_00538 0.71 -0.2 572,090 - PFR28_00538 0.71 -0.5 572,090 - PFR28_00538 0.71 -0.7 572,090 - PFR28_00538 0.71 +0.1 572,090 - PFR28_00538 0.71 -0.1 572,090 - PFR28_00538 0.71 -0.3 572,090 - PFR28_00538 0.71 -0.7 572,090 - PFR28_00538 0.71 +0.2 572,090 - PFR28_00538 0.71 -1.1 572,299 - PFR28_00538 0.88 +0.3 572,299 - PFR28_00538 0.88 +0.5 572,299 - PFR28_00538 0.88 -0.4 572,438 + +0.4 572,439 - -0.1 572,439 - -0.1 572,439 - +0.5 572,443 + +0.1 572,443 + +0.5 572,444 - +0.4 572,444 - +1.2 572,444 - -0.4 572,453 + +0.3 572,454 - -0.3 572,454 - +2.8 572,454 - -0.2 572,541 + +0.3 572,541 + +1.0 572,541 + -1.2 572,541 + -0.0 572,541 + -0.3 572,541 + +1.3 572,542 - -0.6 572,542 - -0.5 572,542 - +0.1 572,542 - -0.4 572,542 - +1.0 572,557 + PFR28_00539 0.12 -0.2 572,715 - PFR28_00539 0.29 +0.2 572,913 + PFR28_00539 0.50 +0.6 572,913 + PFR28_00539 0.50 +0.2 572,913 + PFR28_00539 0.50 -0.2 572,913 + PFR28_00539 0.50 +1.1 572,913 + PFR28_00539 0.50 +0.4 572,913 + PFR28_00539 0.50 +0.4 572,913 + PFR28_00539 0.50 +1.1 572,913 + PFR28_00539 0.50 +1.0 572,913 + PFR28_00539 0.50 -0.4 572,913 + PFR28_00539 0.50 -0.3 572,913 + PFR28_00539 0.50 +0.1 572,914 - PFR28_00539 0.50 +0.5 572,914 - PFR28_00539 0.50 +0.8 572,914 - PFR28_00539 0.50 -0.7 573,011 + PFR28_00539 0.61 +0.2 573,011 + PFR28_00539 0.61 +0.8 573,011 + PFR28_00539 0.61 -0.6 573,012 - PFR28_00539 0.61 -0.7 573,012 - PFR28_00539 0.61 -1.5 573,012 - PFR28_00539 0.61 -0.4 573,012 - PFR28_00539 0.61 +0.3 573,029 + PFR28_00539 0.63 -0.1 573,029 + PFR28_00539 0.63 +0.6 573,091 - PFR28_00539 0.69 -1.1 573,106 + PFR28_00539 0.71 +0.4 573,106 + PFR28_00539 0.71 +0.4 573,107 - PFR28_00539 0.71 -1.2 573,111 + PFR28_00539 0.72 -0.2 573,111 + PFR28_00539 0.72 +0.9 573,111 + PFR28_00539 0.72 -1.9 573,112 - PFR28_00539 0.72 +0.9 573,112 - PFR28_00539 0.72 -0.7 573,112 - PFR28_00539 0.72 -0.1 573,112 - PFR28_00539 0.72 +1.0 573,117 + PFR28_00539 0.72 -0.6 573,117 + PFR28_00539 0.72 +0.1 573,118 - PFR28_00539 0.72 +0.6 573,118 - PFR28_00539 0.72 -0.6 573,118 - PFR28_00539 0.72 -1.9 573,118 - PFR28_00539 0.72 +0.0 573,222 + PFR28_00539 0.84 -0.2 573,222 + PFR28_00539 0.84 +0.8 573,223 - PFR28_00539 0.84 +1.5 573,223 - PFR28_00539 0.84 +0.1 573,223 - PFR28_00539 0.84 +0.5 573,223 - PFR28_00539 0.84 +0.4 573,237 + PFR28_00539 0.85 -0.4 573,237 + PFR28_00539 0.85 +0.2 573,237 + PFR28_00539 0.85 +0.8 573,237 + PFR28_00539 0.85 -0.1 573,237 + PFR28_00539 0.85 +0.8 573,237 + PFR28_00539 0.85 +0.7 573,238 - PFR28_00539 0.85 +0.9 573,238 - PFR28_00539 0.85 +0.7 573,238 - PFR28_00539 0.85 +0.2 573,238 - PFR28_00539 0.85 -0.3 573,238 - PFR28_00539 0.85 -0.3 573,238 - PFR28_00539 0.85 +1.5 573,238 - PFR28_00539 0.85 +1.5 573,260 - PFR28_00539 0.88 -0.4 573,279 + PFR28_00539 0.90 -0.3 573,279 + PFR28_00539 0.90 +0.2 573,280 - PFR28_00539 0.90 -0.5 573,291 + +0.2 573,291 + -3.0 573,312 + +0.3 573,312 + +0.8 573,313 - +0.0 573,313 - -1.3 573,313 - +0.5 573,313 - -0.0 573,313 - +0.1 573,313 - -0.4 573,360 + -0.3 573,361 - -0.9 573,361 - -0.4 573,374 + +1.1 573,375 - -0.0 573,375 - -0.0 573,385 + +0.9 573,385 + -1.2 573,385 + +0.3 573,385 + -1.0 573,494 - -0.3 573,540 + +0.9 573,541 - +1.5 573,549 + +0.1 573,550 - +0.2 573,550 - -0.4 573,610 + -0.8 573,610 + -0.4 573,610 + -0.1 573,611 - -0.1 573,611 - -0.5 573,611 - -0.5 573,634 + +0.1 573,634 + +0.5 573,634 + -1.9 573,662 + +0.4 573,663 - +0.3 573,687 + -0.4 573,687 + -1.0 573,687 + +0.4 573,687 + +0.0 573,687 + +0.6 573,687 + +0.1 573,687 + -1.0 573,687 + +0.9 573,687 + -0.2 573,687 + +0.1 573,688 - -0.2 573,688 - +0.2 573,688 - +1.0 573,688 - -0.7 573,688 - -0.2 573,688 - +0.5 573,688 - +0.0 573,688 - -1.8 573,688 - +0.3 573,688 - +0.4 573,688 - +0.7 573,717 + -2.9 573,717 + -0.4 573,718 - -0.4 573,762 + +0.5 573,763 - -1.2 573,763 - -0.6 574,167 + PFR28_00540 0.40 +0.6 574,167 + PFR28_00540 0.40 +0.5 574,167 + PFR28_00540 0.40 +0.3 574,167 + PFR28_00540 0.40 +0.3 574,168 - PFR28_00540 0.40 +0.6 574,168 - PFR28_00540 0.40 +0.6 574,168 - PFR28_00540 0.40 -0.3 574,171 - PFR28_00540 0.40 -1.1 574,303 + PFR28_00540 0.52 -0.3 574,304 - PFR28_00540 0.52 -0.2 574,314 + PFR28_00540 0.53 +0.8 574,314 + PFR28_00540 0.53 +0.0 574,314 + PFR28_00540 0.53 +0.2 574,314 + PFR28_00540 0.53 -0.6 574,315 - PFR28_00540 0.53 +0.3 574,315 - PFR28_00540 0.53 -1.1 574,371 + PFR28_00540 0.58 -0.9 574,371 + PFR28_00540 0.58 -0.3 574,371 + PFR28_00540 0.58 -0.9 574,371 + PFR28_00540 0.58 +0.1 574,371 + PFR28_00540 0.58 +0.4 574,371 + PFR28_00540 0.58 -0.7 574,371 + PFR28_00540 0.58 -0.4 574,372 - PFR28_00540 0.58 -1.5 574,372 - PFR28_00540 0.58 -0.9 574,372 - PFR28_00540 0.58 +1.0 574,372 - PFR28_00540 0.58 +0.1 574,372 - PFR28_00540 0.58 -0.1 574,372 - PFR28_00540 0.58 -0.1
Or see this region's nucleotide sequence