Strain Fitness in Pseudomonas sp. RS175 around PFR28_00472

Experiment: trans-aconitic (C) 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00471 and PFR28_00472 are separated by 83 nucleotidesPFR28_00472 and PFR28_00473 are separated by 8 nucleotidesPFR28_00473 and PFR28_00474 are separated by 43 nucleotides PFR28_00471: PFR28_00471 - Nicotinamide-nucleotide amidohydrolase PncC, at 506,412 to 506,912 _00471 PFR28_00472: PFR28_00472 - Protein RecA, at 506,996 to 508,048 _00472 PFR28_00473: PFR28_00473 - Regulatory protein RecX, at 508,057 to 508,524 _00473 PFR28_00474: PFR28_00474 - hypothetical protein, at 508,568 to 509,686 _00474 Position (kb) 506 507 508 509Strain fitness (log2 ratio) -2 -1 0 1 2 3at 506.030 kb on + strandat 506.030 kb on + strandat 506.031 kb on - strandat 506.031 kb on - strandat 506.031 kb on - strandat 506.125 kb on + strandat 506.125 kb on + strandat 506.126 kb on - strandat 506.126 kb on - strandat 506.126 kb on - strandat 506.126 kb on - strandat 506.126 kb on - strandat 506.161 kb on + strandat 506.161 kb on + strandat 506.162 kb on - strandat 506.162 kb on - strandat 506.203 kb on + strandat 506.277 kb on - strandat 506.277 kb on - strandat 506.277 kb on - strandat 506.278 kb on + strandat 506.278 kb on + strandat 506.279 kb on - strandat 506.279 kb on - strandat 506.279 kb on - strandat 506.279 kb on - strandat 506.279 kb on - strandat 506.300 kb on + strandat 506.300 kb on + strandat 506.301 kb on - strandat 506.301 kb on - strandat 506.375 kb on + strandat 506.375 kb on + strandat 506.571 kb on + strand, within PFR28_00471at 506.571 kb on + strand, within PFR28_00471at 506.571 kb on + strand, within PFR28_00471at 506.572 kb on - strand, within PFR28_00471at 506.572 kb on - strand, within PFR28_00471at 506.572 kb on - strand, within PFR28_00471at 506.572 kb on - strand, within PFR28_00471at 506.864 kb on - strandat 506.981 kb on + strandat 506.981 kb on + strandat 506.981 kb on + strandat 506.981 kb on + strandat 506.982 kb on - strandat 506.994 kb on + strandat 507.101 kb on - strandat 507.186 kb on - strand, within PFR28_00472at 507.442 kb on - strand, within PFR28_00472at 507.446 kb on - strand, within PFR28_00472at 507.446 kb on - strand, within PFR28_00472at 507.644 kb on + strand, within PFR28_00472at 507.644 kb on + strand, within PFR28_00472at 507.645 kb on - strand, within PFR28_00472at 507.797 kb on + strand, within PFR28_00472at 507.798 kb on - strand, within PFR28_00472at 507.863 kb on + strand, within PFR28_00472at 507.863 kb on + strand, within PFR28_00472at 507.869 kb on + strand, within PFR28_00472at 508.042 kb on + strandat 508.042 kb on + strandat 508.043 kb on - strandat 508.043 kb on - strandat 508.068 kb on - strandat 508.074 kb on + strandat 508.416 kb on - strand, within PFR28_00473at 508.462 kb on + strand, within PFR28_00473at 508.463 kb on - strand, within PFR28_00473at 508.472 kb on - strand, within PFR28_00473at 508.537 kb on + strandat 508.538 kb on - strandat 508.538 kb on - strandat 508.562 kb on - strandat 508.750 kb on - strand, within PFR28_00474at 508.750 kb on - strand, within PFR28_00474at 508.885 kb on + strand, within PFR28_00474at 508.885 kb on + strand, within PFR28_00474at 508.886 kb on - strand, within PFR28_00474at 508.886 kb on - strand, within PFR28_00474at 508.886 kb on - strand, within PFR28_00474at 508.890 kb on + strand, within PFR28_00474at 508.891 kb on - strand, within PFR28_00474at 508.891 kb on - strand, within PFR28_00474at 508.891 kb on - strand, within PFR28_00474at 508.929 kb on + strand, within PFR28_00474at 508.929 kb on + strand, within PFR28_00474at 508.929 kb on + strand, within PFR28_00474at 508.929 kb on + strand, within PFR28_00474at 508.929 kb on + strand, within PFR28_00474at 508.929 kb on + strand, within PFR28_00474at 508.930 kb on - strand, within PFR28_00474at 508.930 kb on - strand, within PFR28_00474at 508.930 kb on - strand, within PFR28_00474at 508.930 kb on - strand, within PFR28_00474at 508.930 kb on - strand, within PFR28_00474at 508.930 kb on - strand, within PFR28_00474at 508.930 kb on - strand, within PFR28_00474at 508.930 kb on - strand, within PFR28_00474at 508.931 kb on + strand, within PFR28_00474at 508.931 kb on + strand, within PFR28_00474at 508.931 kb on + strand, within PFR28_00474at 508.931 kb on + strand, within PFR28_00474at 508.931 kb on + strand, within PFR28_00474at 508.932 kb on - strand, within PFR28_00474at 508.968 kb on + strand, within PFR28_00474at 508.968 kb on + strand, within PFR28_00474at 508.969 kb on - strand, within PFR28_00474at 509.042 kb on + strand, within PFR28_00474at 509.042 kb on + strand, within PFR28_00474at 509.043 kb on - strand, within PFR28_00474at 509.043 kb on - strand, within PFR28_00474at 509.045 kb on + strand, within PFR28_00474at 509.045 kb on + strand, within PFR28_00474at 509.045 kb on + strand, within PFR28_00474at 509.045 kb on + strand, within PFR28_00474at 509.045 kb on + strand, within PFR28_00474at 509.045 kb on + strand, within PFR28_00474at 509.045 kb on + strand, within PFR28_00474at 509.046 kb on - strand, within PFR28_00474at 509.046 kb on - strand, within PFR28_00474at 509.046 kb on - strand, within PFR28_00474at 509.046 kb on - strand, within PFR28_00474at 509.046 kb on - strand, within PFR28_00474at 509.046 kb on - strand, within PFR28_00474at 509.046 kb on - strand, within PFR28_00474at 509.046 kb on - strand, within PFR28_00474at 509.048 kb on + strand, within PFR28_00474at 509.048 kb on + strand, within PFR28_00474

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Per-strain Table

Position Strand Gene LocusTag Fraction trans-aconitic (C) 5 mM
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506,030 + +0.3
506,030 + +0.4
506,031 - -0.1
506,031 - +0.2
506,031 - +0.1
506,125 + +0.5
506,125 + +1.3
506,126 - +0.6
506,126 - +0.1
506,126 - -0.2
506,126 - -0.3
506,126 - -0.0
506,161 + +0.2
506,161 + +0.1
506,162 - -0.3
506,162 - +0.2
506,203 + +1.0
506,277 - +0.1
506,277 - -0.3
506,277 - +0.6
506,278 + -0.0
506,278 + +1.2
506,279 - -0.6
506,279 - +0.0
506,279 - +0.5
506,279 - +0.1
506,279 - +0.2
506,300 + -0.6
506,300 + +0.2
506,301 - +0.9
506,301 - +2.9
506,375 + -2.1
506,375 + -0.7
506,571 + PFR28_00471 0.32 +1.0
506,571 + PFR28_00471 0.32 -1.0
506,571 + PFR28_00471 0.32 +0.4
506,572 - PFR28_00471 0.32 +1.2
506,572 - PFR28_00471 0.32 -0.1
506,572 - PFR28_00471 0.32 +0.9
506,572 - PFR28_00471 0.32 -0.2
506,864 - +0.9
506,981 + -0.5
506,981 + -1.0
506,981 + +0.5
506,981 + -2.0
506,982 - +0.7
506,994 + -2.3
507,101 - -1.3
507,186 - PFR28_00472 0.18 -0.0
507,442 - PFR28_00472 0.42 -2.5
507,446 - PFR28_00472 0.43 -0.7
507,446 - PFR28_00472 0.43 -1.4
507,644 + PFR28_00472 0.62 -0.6
507,644 + PFR28_00472 0.62 -1.7
507,645 - PFR28_00472 0.62 +0.6
507,797 + PFR28_00472 0.76 -1.4
507,798 - PFR28_00472 0.76 -1.9
507,863 + PFR28_00472 0.82 +0.4
507,863 + PFR28_00472 0.82 -0.9
507,869 + PFR28_00472 0.83 +1.0
508,042 + +1.2
508,042 + +1.2
508,043 - -1.9
508,043 - -1.4
508,068 - -1.1
508,074 + +1.3
508,416 - PFR28_00473 0.77 -0.8
508,462 + PFR28_00473 0.87 -0.7
508,463 - PFR28_00473 0.87 -1.5
508,472 - PFR28_00473 0.89 -0.1
508,537 + +0.2
508,538 - +2.0
508,538 - +2.0
508,562 - +0.4
508,750 - PFR28_00474 0.16 -0.2
508,750 - PFR28_00474 0.16 +0.6
508,885 + PFR28_00474 0.28 -0.3
508,885 + PFR28_00474 0.28 +0.1
508,886 - PFR28_00474 0.28 -0.2
508,886 - PFR28_00474 0.28 +0.4
508,886 - PFR28_00474 0.28 -1.3
508,890 + PFR28_00474 0.29 +0.2
508,891 - PFR28_00474 0.29 -1.6
508,891 - PFR28_00474 0.29 -1.6
508,891 - PFR28_00474 0.29 +0.9
508,929 + PFR28_00474 0.32 -0.7
508,929 + PFR28_00474 0.32 -0.1
508,929 + PFR28_00474 0.32 -0.1
508,929 + PFR28_00474 0.32 -1.0
508,929 + PFR28_00474 0.32 -0.2
508,929 + PFR28_00474 0.32 -0.1
508,930 - PFR28_00474 0.32 -0.0
508,930 - PFR28_00474 0.32 -0.1
508,930 - PFR28_00474 0.32 -0.9
508,930 - PFR28_00474 0.32 -0.8
508,930 - PFR28_00474 0.32 -0.3
508,930 - PFR28_00474 0.32 -0.5
508,930 - PFR28_00474 0.32 +0.7
508,930 - PFR28_00474 0.32 -0.5
508,931 + PFR28_00474 0.32 +0.6
508,931 + PFR28_00474 0.32 -0.8
508,931 + PFR28_00474 0.32 +0.1
508,931 + PFR28_00474 0.32 +1.1
508,931 + PFR28_00474 0.32 +0.6
508,932 - PFR28_00474 0.33 -0.3
508,968 + PFR28_00474 0.36 +1.1
508,968 + PFR28_00474 0.36 -0.2
508,969 - PFR28_00474 0.36 -0.3
509,042 + PFR28_00474 0.42 +0.1
509,042 + PFR28_00474 0.42 -2.5
509,043 - PFR28_00474 0.42 -0.6
509,043 - PFR28_00474 0.42 -0.2
509,045 + PFR28_00474 0.43 +0.7
509,045 + PFR28_00474 0.43 +0.9
509,045 + PFR28_00474 0.43 +0.1
509,045 + PFR28_00474 0.43 -0.8
509,045 + PFR28_00474 0.43 +0.4
509,045 + PFR28_00474 0.43 -0.2
509,045 + PFR28_00474 0.43 +0.1
509,046 - PFR28_00474 0.43 +0.6
509,046 - PFR28_00474 0.43 -0.1
509,046 - PFR28_00474 0.43 -1.7
509,046 - PFR28_00474 0.43 -0.5
509,046 - PFR28_00474 0.43 +0.1
509,046 - PFR28_00474 0.43 +0.2
509,046 - PFR28_00474 0.43 +0.2
509,046 - PFR28_00474 0.43 -1.6
509,048 + PFR28_00474 0.43 +0.3
509,048 + PFR28_00474 0.43 -0.3

Or see this region's nucleotide sequence