Strain Fitness in Pseudomonas sp. RS175 around PFR28_00425

Experiment: trans-aconitic (C) 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00423 and PFR28_00424 overlap by 13 nucleotidesPFR28_00424 and PFR28_00425 overlap by 1 nucleotidesPFR28_00425 and PFR28_00426 are separated by 211 nucleotides PFR28_00423: PFR28_00423 - tRNA pseudouridine synthase D, at 464,463 to 465,521 _00423 PFR28_00424: PFR28_00424 - '5'-nucleotidase SurE' transl_table=11, at 465,509 to 466,258 _00424 PFR28_00425: PFR28_00425 - Protein-L-isoaspartate O-methyltransferase, at 466,258 to 466,935 _00425 PFR28_00426: PFR28_00426 - hypothetical protein, at 467,147 to 467,995 _00426 Position (kb) 466 467Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 465.332 kb on - strand, within PFR28_00423at 465.515 kb on - strandat 465.566 kb on + strandat 465.566 kb on + strandat 465.671 kb on + strand, within PFR28_00424at 465.671 kb on + strand, within PFR28_00424at 465.672 kb on - strand, within PFR28_00424at 465.812 kb on + strand, within PFR28_00424at 465.918 kb on - strand, within PFR28_00424at 465.928 kb on + strand, within PFR28_00424at 465.929 kb on - strand, within PFR28_00424at 465.929 kb on - strand, within PFR28_00424at 465.989 kb on - strand, within PFR28_00424at 466.172 kb on + strand, within PFR28_00424at 466.172 kb on + strand, within PFR28_00424at 466.172 kb on + strand, within PFR28_00424at 466.172 kb on + strand, within PFR28_00424at 466.172 kb on + strand, within PFR28_00424at 466.172 kb on + strand, within PFR28_00424at 466.172 kb on + strand, within PFR28_00424at 466.172 kb on + strand, within PFR28_00424at 466.172 kb on + strand, within PFR28_00424at 466.173 kb on - strand, within PFR28_00424at 466.173 kb on - strand, within PFR28_00424at 466.173 kb on - strand, within PFR28_00424at 466.173 kb on - strand, within PFR28_00424at 466.173 kb on - strand, within PFR28_00424at 466.278 kb on + strandat 466.279 kb on - strandat 466.279 kb on - strandat 466.279 kb on - strandat 466.283 kb on + strandat 466.284 kb on - strandat 466.284 kb on - strandat 466.284 kb on - strandat 466.342 kb on + strand, within PFR28_00425at 466.343 kb on - strand, within PFR28_00425at 466.390 kb on - strand, within PFR28_00425at 466.435 kb on + strand, within PFR28_00425at 466.435 kb on + strand, within PFR28_00425at 466.435 kb on + strand, within PFR28_00425at 466.436 kb on - strand, within PFR28_00425at 466.436 kb on - strand, within PFR28_00425at 466.465 kb on - strand, within PFR28_00425at 466.486 kb on + strand, within PFR28_00425at 466.486 kb on + strand, within PFR28_00425at 466.486 kb on + strand, within PFR28_00425at 466.486 kb on + strand, within PFR28_00425at 466.486 kb on + strand, within PFR28_00425at 466.486 kb on + strand, within PFR28_00425at 466.486 kb on + strand, within PFR28_00425at 466.486 kb on + strand, within PFR28_00425at 466.486 kb on + strand, within PFR28_00425at 466.486 kb on + strand, within PFR28_00425at 466.486 kb on + strand, within PFR28_00425at 466.486 kb on + strand, within PFR28_00425at 466.486 kb on + strand, within PFR28_00425at 466.486 kb on + strand, within PFR28_00425at 466.486 kb on + strand, within PFR28_00425at 466.486 kb on + strand, within PFR28_00425at 466.486 kb on + strand, within PFR28_00425at 466.486 kb on + strand, within PFR28_00425at 466.486 kb on + strand, within PFR28_00425at 466.486 kb on + strand, within PFR28_00425at 466.486 kb on + strand, within PFR28_00425at 466.486 kb on + strand, within PFR28_00425at 466.486 kb on + strand, within PFR28_00425at 466.487 kb on - strand, within PFR28_00425at 466.487 kb on - strand, within PFR28_00425at 466.487 kb on - strand, within PFR28_00425at 466.487 kb on - strand, within PFR28_00425at 466.487 kb on - strand, within PFR28_00425at 466.487 kb on - strand, within PFR28_00425at 466.487 kb on - strand, within PFR28_00425at 466.487 kb on - strand, within PFR28_00425at 466.488 kb on + strand, within PFR28_00425at 466.488 kb on + strand, within PFR28_00425at 466.488 kb on + strand, within PFR28_00425at 466.488 kb on + strand, within PFR28_00425at 466.488 kb on + strand, within PFR28_00425at 466.488 kb on + strand, within PFR28_00425at 466.488 kb on + strand, within PFR28_00425at 466.488 kb on + strand, within PFR28_00425at 466.488 kb on + strand, within PFR28_00425at 466.488 kb on + strand, within PFR28_00425at 466.488 kb on + strand, within PFR28_00425at 466.488 kb on + strand, within PFR28_00425at 466.488 kb on + strand, within PFR28_00425at 466.488 kb on + strand, within PFR28_00425at 466.489 kb on - strand, within PFR28_00425at 466.489 kb on - strand, within PFR28_00425at 466.489 kb on - strand, within PFR28_00425at 466.489 kb on - strand, within PFR28_00425at 466.489 kb on - strand, within PFR28_00425at 466.489 kb on - strand, within PFR28_00425at 466.489 kb on - strand, within PFR28_00425at 466.489 kb on - strand, within PFR28_00425at 466.489 kb on - strand, within PFR28_00425at 466.489 kb on - strand, within PFR28_00425at 466.489 kb on - strand, within PFR28_00425at 466.489 kb on - strand, within PFR28_00425at 466.489 kb on - strand, within PFR28_00425at 466.682 kb on + strand, within PFR28_00425at 466.682 kb on + strand, within PFR28_00425at 466.683 kb on - strand, within PFR28_00425at 466.683 kb on - strand, within PFR28_00425at 466.683 kb on - strand, within PFR28_00425at 466.729 kb on + strand, within PFR28_00425at 466.729 kb on + strand, within PFR28_00425at 466.729 kb on + strand, within PFR28_00425at 466.729 kb on + strand, within PFR28_00425at 466.729 kb on + strand, within PFR28_00425at 466.730 kb on - strand, within PFR28_00425at 466.730 kb on - strand, within PFR28_00425at 466.732 kb on - strand, within PFR28_00425at 466.732 kb on - strand, within PFR28_00425at 466.836 kb on - strand, within PFR28_00425at 466.836 kb on - strand, within PFR28_00425at 466.941 kb on + strandat 466.941 kb on + strandat 466.942 kb on - strandat 466.942 kb on - strandat 466.942 kb on - strandat 466.942 kb on - strandat 466.942 kb on - strandat 466.943 kb on + strandat 466.944 kb on - strandat 466.944 kb on - strandat 466.980 kb on + strandat 466.980 kb on + strandat 466.980 kb on + strandat 466.980 kb on + strandat 466.980 kb on + strandat 466.981 kb on - strandat 467.004 kb on - strandat 467.057 kb on + strandat 467.057 kb on + strandat 467.057 kb on + strandat 467.057 kb on + strandat 467.057 kb on + strandat 467.057 kb on + strandat 467.057 kb on + strandat 467.058 kb on - strandat 467.058 kb on - strandat 467.058 kb on - strandat 467.058 kb on - strandat 467.058 kb on - strandat 467.080 kb on - strandat 467.081 kb on + strandat 467.082 kb on - strandat 467.082 kb on - strandat 467.173 kb on + strandat 467.173 kb on + strandat 467.173 kb on + strandat 467.173 kb on + strandat 467.173 kb on + strandat 467.173 kb on + strandat 467.173 kb on + strandat 467.174 kb on - strandat 467.174 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction trans-aconitic (C) 5 mM
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465,332 - PFR28_00423 0.82 -0.3
465,515 - +1.6
465,566 + -3.2
465,566 + -2.1
465,671 + PFR28_00424 0.22 -1.6
465,671 + PFR28_00424 0.22 -0.8
465,672 - PFR28_00424 0.22 -2.1
465,812 + PFR28_00424 0.40 +0.6
465,918 - PFR28_00424 0.55 +0.6
465,928 + PFR28_00424 0.56 -1.1
465,929 - PFR28_00424 0.56 -2.0
465,929 - PFR28_00424 0.56 -2.7
465,989 - PFR28_00424 0.64 -2.4
466,172 + PFR28_00424 0.88 -1.5
466,172 + PFR28_00424 0.88 -0.6
466,172 + PFR28_00424 0.88 -1.8
466,172 + PFR28_00424 0.88 +0.3
466,172 + PFR28_00424 0.88 +0.6
466,172 + PFR28_00424 0.88 -0.7
466,172 + PFR28_00424 0.88 -0.5
466,172 + PFR28_00424 0.88 +1.6
466,172 + PFR28_00424 0.88 -0.0
466,173 - PFR28_00424 0.89 -1.5
466,173 - PFR28_00424 0.89 -1.6
466,173 - PFR28_00424 0.89 -2.3
466,173 - PFR28_00424 0.89 -1.3
466,173 - PFR28_00424 0.89 -1.5
466,278 + -1.4
466,279 - -0.6
466,279 - -2.6
466,279 - -1.8
466,283 + -4.0
466,284 - -1.5
466,284 - -0.9
466,284 - -1.3
466,342 + PFR28_00425 0.12 -3.7
466,343 - PFR28_00425 0.13 -0.5
466,390 - PFR28_00425 0.19 -0.9
466,435 + PFR28_00425 0.26 -1.1
466,435 + PFR28_00425 0.26 -3.5
466,435 + PFR28_00425 0.26 -2.7
466,436 - PFR28_00425 0.26 -1.6
466,436 - PFR28_00425 0.26 -1.8
466,465 - PFR28_00425 0.31 -1.5
466,486 + PFR28_00425 0.34 -0.9
466,486 + PFR28_00425 0.34 -1.4
466,486 + PFR28_00425 0.34 -0.4
466,486 + PFR28_00425 0.34 -1.8
466,486 + PFR28_00425 0.34 -2.2
466,486 + PFR28_00425 0.34 -1.4
466,486 + PFR28_00425 0.34 -1.3
466,486 + PFR28_00425 0.34 -3.0
466,486 + PFR28_00425 0.34 -3.0
466,486 + PFR28_00425 0.34 -1.3
466,486 + PFR28_00425 0.34 -1.1
466,486 + PFR28_00425 0.34 -2.4
466,486 + PFR28_00425 0.34 -1.4
466,486 + PFR28_00425 0.34 -2.6
466,486 + PFR28_00425 0.34 -1.6
466,486 + PFR28_00425 0.34 -2.0
466,486 + PFR28_00425 0.34 -1.4
466,486 + PFR28_00425 0.34 -2.9
466,486 + PFR28_00425 0.34 +0.4
466,486 + PFR28_00425 0.34 -0.6
466,486 + PFR28_00425 0.34 -1.9
466,486 + PFR28_00425 0.34 -0.0
466,486 + PFR28_00425 0.34 +0.8
466,487 - PFR28_00425 0.34 -2.7
466,487 - PFR28_00425 0.34 -1.3
466,487 - PFR28_00425 0.34 +0.9
466,487 - PFR28_00425 0.34 +0.3
466,487 - PFR28_00425 0.34 -0.4
466,487 - PFR28_00425 0.34 -1.5
466,487 - PFR28_00425 0.34 -2.4
466,487 - PFR28_00425 0.34 -0.4
466,488 + PFR28_00425 0.34 -0.4
466,488 + PFR28_00425 0.34 -1.3
466,488 + PFR28_00425 0.34 -1.0
466,488 + PFR28_00425 0.34 -1.0
466,488 + PFR28_00425 0.34 -2.0
466,488 + PFR28_00425 0.34 -2.3
466,488 + PFR28_00425 0.34 -0.3
466,488 + PFR28_00425 0.34 -1.0
466,488 + PFR28_00425 0.34 -0.6
466,488 + PFR28_00425 0.34 -0.6
466,488 + PFR28_00425 0.34 -2.1
466,488 + PFR28_00425 0.34 -1.0
466,488 + PFR28_00425 0.34 -0.8
466,488 + PFR28_00425 0.34 -1.2
466,489 - PFR28_00425 0.34 -2.0
466,489 - PFR28_00425 0.34 -1.3
466,489 - PFR28_00425 0.34 -0.6
466,489 - PFR28_00425 0.34 -1.8
466,489 - PFR28_00425 0.34 -0.8
466,489 - PFR28_00425 0.34 -1.4
466,489 - PFR28_00425 0.34 +0.3
466,489 - PFR28_00425 0.34 -2.2
466,489 - PFR28_00425 0.34 -0.9
466,489 - PFR28_00425 0.34 -2.1
466,489 - PFR28_00425 0.34 -1.9
466,489 - PFR28_00425 0.34 -0.6
466,489 - PFR28_00425 0.34 -1.1
466,682 + PFR28_00425 0.63 -3.9
466,682 + PFR28_00425 0.63 +0.2
466,683 - PFR28_00425 0.63 -1.2
466,683 - PFR28_00425 0.63 -1.5
466,683 - PFR28_00425 0.63 -2.0
466,729 + PFR28_00425 0.69 -2.4
466,729 + PFR28_00425 0.69 -2.0
466,729 + PFR28_00425 0.69 -0.4
466,729 + PFR28_00425 0.69 -1.2
466,729 + PFR28_00425 0.69 -1.3
466,730 - PFR28_00425 0.70 -1.1
466,730 - PFR28_00425 0.70 -0.4
466,732 - PFR28_00425 0.70 -2.6
466,732 - PFR28_00425 0.70 -1.8
466,836 - PFR28_00425 0.85 -1.4
466,836 - PFR28_00425 0.85 -0.7
466,941 + -0.4
466,941 + +0.3
466,942 - +0.2
466,942 - +0.3
466,942 - +0.2
466,942 - +0.1
466,942 - +0.6
466,943 + -0.6
466,944 - +0.6
466,944 - -0.0
466,980 + -0.2
466,980 + -0.5
466,980 + +0.7
466,980 + -0.7
466,980 + -0.7
466,981 - -0.7
467,004 - -0.0
467,057 + +0.4
467,057 + -0.4
467,057 + -2.1
467,057 + -0.4
467,057 + +0.3
467,057 + -0.7
467,057 + -0.2
467,058 - -0.3
467,058 - -0.2
467,058 - +1.1
467,058 - +0.1
467,058 - +0.2
467,080 - -0.2
467,081 + +0.7
467,082 - +1.2
467,082 - +0.3
467,173 + -0.5
467,173 + -1.0
467,173 + -0.2
467,173 + +0.1
467,173 + -0.2
467,173 + -0.9
467,173 + -0.2
467,174 - -0.3
467,174 - -0.7

Or see this region's nucleotide sequence