Experiment: trans-aconitic (C) 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00269 and PFR28_00270 are separated by 19 nucleotides PFR28_00270 and PFR28_00271 are separated by 189 nucleotides
PFR28_00269: PFR28_00269 - 4-hydroxy-tetrahydrodipicolinate synthase, at 297,795 to 298,682
_00269
PFR28_00270: PFR28_00270 - 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase, at 298,702 to 299,484
_00270
PFR28_00271: PFR28_00271 - hypothetical protein, at 299,674 to 300,201
_00271
Position (kb) 299
300
301 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 298.745 kb on + strand at 298.745 kb on + strand at 298.745 kb on + strand at 298.746 kb on - strand at 298.748 kb on + strand at 298.748 kb on + strand at 298.748 kb on + strand at 298.749 kb on - strand at 298.749 kb on - strand at 299.045 kb on + strand, within PFR28_00270 at 299.045 kb on + strand, within PFR28_00270 at 299.159 kb on + strand, within PFR28_00270 at 299.288 kb on + strand, within PFR28_00270 at 299.288 kb on + strand, within PFR28_00270 at 299.288 kb on + strand, within PFR28_00270 at 299.289 kb on - strand, within PFR28_00270 at 299.289 kb on - strand, within PFR28_00270 at 299.289 kb on - strand, within PFR28_00270 at 299.289 kb on - strand, within PFR28_00270 at 299.289 kb on - strand, within PFR28_00270 at 299.289 kb on - strand, within PFR28_00270 at 299.289 kb on - strand, within PFR28_00270 at 299.291 kb on + strand, within PFR28_00270 at 299.291 kb on + strand, within PFR28_00270 at 299.291 kb on + strand, within PFR28_00270 at 299.291 kb on + strand, within PFR28_00270 at 299.292 kb on - strand, within PFR28_00270 at 299.292 kb on - strand, within PFR28_00270 at 299.292 kb on - strand, within PFR28_00270 at 299.292 kb on - strand, within PFR28_00270 at 299.292 kb on - strand, within PFR28_00270 at 299.292 kb on - strand, within PFR28_00270 at 299.292 kb on - strand, within PFR28_00270 at 299.292 kb on - strand, within PFR28_00270 at 299.392 kb on + strand, within PFR28_00270 at 299.403 kb on + strand, within PFR28_00270 at 299.403 kb on + strand, within PFR28_00270 at 299.403 kb on + strand, within PFR28_00270 at 299.404 kb on - strand, within PFR28_00270 at 299.407 kb on - strand at 299.484 kb on + strand at 299.634 kb on + strand at 299.634 kb on + strand at 299.634 kb on + strand at 299.634 kb on + strand at 299.634 kb on + strand at 299.634 kb on + strand at 299.634 kb on + strand at 299.634 kb on + strand at 299.634 kb on + strand at 299.634 kb on + strand at 299.634 kb on + strand at 299.635 kb on - strand at 299.635 kb on - strand at 299.635 kb on - strand at 299.635 kb on - strand at 299.635 kb on - strand at 299.635 kb on - strand at 299.635 kb on - strand at 299.635 kb on - strand at 299.635 kb on - strand at 299.719 kb on + strand at 299.719 kb on + strand at 299.719 kb on + strand at 299.720 kb on - strand at 299.720 kb on - strand at 299.842 kb on + strand, within PFR28_00271 at 299.842 kb on + strand, within PFR28_00271 at 299.842 kb on + strand, within PFR28_00271 at 299.842 kb on + strand, within PFR28_00271 at 299.843 kb on - strand, within PFR28_00271 at 299.843 kb on - strand, within PFR28_00271 at 299.843 kb on - strand, within PFR28_00271 at 299.843 kb on - strand, within PFR28_00271 at 299.843 kb on - strand, within PFR28_00271 at 299.843 kb on - strand, within PFR28_00271 at 299.843 kb on - strand, within PFR28_00271 at 299.843 kb on - strand, within PFR28_00271 at 299.843 kb on - strand, within PFR28_00271 at 299.843 kb on - strand, within PFR28_00271 at 300.200 kb on - strand at 300.274 kb on - strand at 300.359 kb on - strand at 300.359 kb on - strand at 300.420 kb on - strand at 300.425 kb on + strand at 300.425 kb on + strand at 300.426 kb on - strand at 300.426 kb on - strand at 300.426 kb on - strand at 300.467 kb on + strand at 300.522 kb on - strand at 300.522 kb on - strand at 300.612 kb on - strand at 300.627 kb on + strand at 300.693 kb on + strand at 300.693 kb on + strand at 300.693 kb on + strand at 300.694 kb on - strand at 300.694 kb on - strand at 300.694 kb on - strand at 300.694 kb on - strand at 300.694 kb on - strand at 300.694 kb on - strand at 300.694 kb on - strand at 300.712 kb on - strand at 300.729 kb on + strand at 300.729 kb on + strand at 300.729 kb on + strand at 300.730 kb on - strand at 300.730 kb on - strand at 300.730 kb on - strand at 300.811 kb on + strand at 300.812 kb on - strand at 300.812 kb on - strand at 300.815 kb on - strand at 300.815 kb on - strand at 300.832 kb on - strand at 301.047 kb on + strand at 301.063 kb on + strand at 301.064 kb on - strand at 301.110 kb on + strand at 301.140 kb on + strand at 301.140 kb on + strand at 301.140 kb on + strand at 301.160 kb on - strand at 301.179 kb on + strand at 301.180 kb on - strand at 301.182 kb on + strand at 301.183 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction trans-aconitic (C) 5 mM remove 298,745 + -0.2 298,745 + -0.3 298,745 + -1.3 298,746 - +0.7 298,748 + +0.2 298,748 + -0.3 298,748 + -0.5 298,749 - +0.4 298,749 - -0.8 299,045 + PFR28_00270 0.44 +0.3 299,045 + PFR28_00270 0.44 -0.4 299,159 + PFR28_00270 0.58 -0.1 299,288 + PFR28_00270 0.75 +0.1 299,288 + PFR28_00270 0.75 +0.5 299,288 + PFR28_00270 0.75 -0.1 299,289 - PFR28_00270 0.75 -1.4 299,289 - PFR28_00270 0.75 +1.0 299,289 - PFR28_00270 0.75 +0.9 299,289 - PFR28_00270 0.75 -0.1 299,289 - PFR28_00270 0.75 +0.3 299,289 - PFR28_00270 0.75 -1.1 299,289 - PFR28_00270 0.75 +0.2 299,291 + PFR28_00270 0.75 +0.9 299,291 + PFR28_00270 0.75 -0.2 299,291 + PFR28_00270 0.75 +0.2 299,291 + PFR28_00270 0.75 +0.2 299,292 - PFR28_00270 0.75 -0.4 299,292 - PFR28_00270 0.75 -0.1 299,292 - PFR28_00270 0.75 +0.0 299,292 - PFR28_00270 0.75 -0.8 299,292 - PFR28_00270 0.75 +0.3 299,292 - PFR28_00270 0.75 +0.8 299,292 - PFR28_00270 0.75 -0.6 299,292 - PFR28_00270 0.75 +0.0 299,392 + PFR28_00270 0.88 +0.4 299,403 + PFR28_00270 0.90 +0.4 299,403 + PFR28_00270 0.90 +0.5 299,403 + PFR28_00270 0.90 +2.1 299,404 - PFR28_00270 0.90 +0.7 299,407 - +0.7 299,484 + +0.8 299,634 + +0.6 299,634 + +0.8 299,634 + +0.7 299,634 + -1.1 299,634 + +1.5 299,634 + -0.7 299,634 + -0.7 299,634 + +0.4 299,634 + +0.3 299,634 + +1.6 299,634 + +0.6 299,635 - -0.7 299,635 - -0.3 299,635 - -2.7 299,635 - -1.2 299,635 - -0.2 299,635 - -1.2 299,635 - -1.0 299,635 - -3.2 299,635 - -1.0 299,719 + +0.2 299,719 + -0.5 299,719 + +3.6 299,720 - +0.0 299,720 - +0.7 299,842 + PFR28_00271 0.32 -1.0 299,842 + PFR28_00271 0.32 -0.2 299,842 + PFR28_00271 0.32 -0.3 299,842 + PFR28_00271 0.32 -1.2 299,843 - PFR28_00271 0.32 +0.7 299,843 - PFR28_00271 0.32 +1.6 299,843 - PFR28_00271 0.32 -1.0 299,843 - PFR28_00271 0.32 -0.7 299,843 - PFR28_00271 0.32 +0.6 299,843 - PFR28_00271 0.32 -0.9 299,843 - PFR28_00271 0.32 -1.7 299,843 - PFR28_00271 0.32 -0.9 299,843 - PFR28_00271 0.32 -0.2 299,843 - PFR28_00271 0.32 -0.6 300,200 - +0.5 300,274 - +0.9 300,359 - +0.3 300,359 - +0.7 300,420 - +1.0 300,425 + -1.1 300,425 + +1.0 300,426 - +0.3 300,426 - +0.6 300,426 - +0.2 300,467 + -0.2 300,522 - +1.0 300,522 - -0.2 300,612 - +0.5 300,627 + -0.1 300,693 + +0.2 300,693 + +0.4 300,693 + -0.1 300,694 - +0.7 300,694 - +0.1 300,694 - -0.2 300,694 - +0.0 300,694 - +0.1 300,694 - +0.6 300,694 - +0.0 300,712 - -0.7 300,729 + +0.0 300,729 + +2.0 300,729 + +0.6 300,730 - +0.4 300,730 - -1.3 300,730 - -0.1 300,811 + +0.6 300,812 - +0.5 300,812 - -0.4 300,815 - +0.1 300,815 - +0.9 300,832 - -0.4 301,047 + -0.5 301,063 + +0.1 301,064 - -0.1 301,110 + -0.1 301,140 + +0.1 301,140 + +1.4 301,140 + +0.7 301,160 - -1.5 301,179 + +0.2 301,180 - -0.2 301,182 + +0.4 301,183 - +0.0
Or see this region's nucleotide sequence