Experiment: trans-aconitic (C) 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00192 and PFR28_00193 are separated by 183 nucleotides PFR28_00193 and PFR28_00194 are separated by 9 nucleotides
PFR28_00192: PFR28_00192 - GTP cyclohydrolase 1 type 2, at 215,905 to 216,663
_00192
PFR28_00193: PFR28_00193 - Sulfate adenylyltransferase subunit 2, at 216,847 to 217,764
_00193
PFR28_00194: PFR28_00194 - Bifunctional enzyme CysN/CysC, at 217,774 to 219,672
_00194
Position (kb) 216
217
218 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 215.857 kb on + strand at 215.857 kb on + strand at 215.857 kb on + strand at 215.857 kb on + strand at 215.858 kb on - strand at 215.858 kb on - strand at 215.858 kb on - strand at 215.858 kb on - strand at 215.859 kb on + strand at 215.859 kb on + strand at 215.860 kb on - strand at 215.860 kb on - strand at 215.860 kb on - strand at 215.860 kb on - strand at 215.889 kb on - strand at 215.892 kb on + strand at 215.892 kb on + strand at 215.892 kb on + strand at 215.892 kb on + strand at 215.893 kb on - strand at 215.893 kb on - strand at 215.893 kb on - strand at 215.893 kb on - strand at 215.893 kb on - strand at 215.893 kb on - strand at 215.913 kb on - strand at 215.913 kb on - strand at 215.974 kb on + strand at 215.974 kb on + strand at 215.996 kb on + strand, within PFR28_00192 at 215.997 kb on - strand, within PFR28_00192 at 216.106 kb on + strand, within PFR28_00192 at 216.107 kb on - strand, within PFR28_00192 at 216.107 kb on - strand, within PFR28_00192 at 216.107 kb on - strand, within PFR28_00192 at 216.107 kb on - strand, within PFR28_00192 at 216.196 kb on + strand, within PFR28_00192 at 216.197 kb on - strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.452 kb on - strand, within PFR28_00192 at 216.452 kb on - strand, within PFR28_00192 at 216.452 kb on - strand, within PFR28_00192 at 216.452 kb on - strand, within PFR28_00192 at 216.452 kb on - strand, within PFR28_00192 at 216.487 kb on + strand, within PFR28_00192 at 216.487 kb on + strand, within PFR28_00192 at 216.488 kb on - strand, within PFR28_00192 at 216.488 kb on - strand, within PFR28_00192 at 216.604 kb on + strand at 216.605 kb on - strand at 216.605 kb on - strand at 216.605 kb on - strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.671 kb on + strand at 216.672 kb on - strand at 216.672 kb on - strand at 216.672 kb on - strand at 216.672 kb on - strand at 216.672 kb on - strand at 216.710 kb on + strand at 216.737 kb on + strand at 216.738 kb on - strand at 216.738 kb on - strand at 216.768 kb on + strand at 216.768 kb on + strand at 216.769 kb on - strand at 216.786 kb on + strand at 216.786 kb on + strand at 216.786 kb on + strand at 216.786 kb on + strand at 216.787 kb on - strand at 216.824 kb on + strand at 216.824 kb on + strand at 216.824 kb on + strand at 216.843 kb on - strand at 216.843 kb on - strand at 216.943 kb on + strand, within PFR28_00193 at 216.943 kb on + strand, within PFR28_00193 at 216.944 kb on - strand, within PFR28_00193 at 216.944 kb on - strand, within PFR28_00193 at 217.060 kb on + strand, within PFR28_00193 at 217.060 kb on + strand, within PFR28_00193 at 217.060 kb on + strand, within PFR28_00193 at 217.061 kb on - strand, within PFR28_00193 at 217.061 kb on - strand, within PFR28_00193 at 217.061 kb on - strand, within PFR28_00193 at 217.219 kb on + strand, within PFR28_00193 at 217.219 kb on + strand, within PFR28_00193 at 217.219 kb on + strand, within PFR28_00193 at 217.219 kb on + strand, within PFR28_00193 at 217.219 kb on + strand, within PFR28_00193 at 217.219 kb on + strand, within PFR28_00193 at 217.220 kb on - strand, within PFR28_00193 at 217.220 kb on - strand, within PFR28_00193 at 217.220 kb on - strand, within PFR28_00193 at 217.220 kb on - strand, within PFR28_00193 at 217.220 kb on - strand, within PFR28_00193 at 217.220 kb on - strand, within PFR28_00193 at 217.220 kb on - strand, within PFR28_00193 at 217.220 kb on - strand, within PFR28_00193 at 217.355 kb on - strand, within PFR28_00193 at 217.432 kb on + strand, within PFR28_00193 at 217.432 kb on + strand, within PFR28_00193 at 217.432 kb on + strand, within PFR28_00193 at 217.432 kb on + strand, within PFR28_00193 at 217.432 kb on + strand, within PFR28_00193 at 217.432 kb on + strand, within PFR28_00193 at 217.432 kb on + strand, within PFR28_00193 at 217.432 kb on + strand, within PFR28_00193 at 217.432 kb on + strand, within PFR28_00193 at 217.433 kb on - strand, within PFR28_00193 at 217.433 kb on - strand, within PFR28_00193 at 217.433 kb on - strand, within PFR28_00193 at 217.433 kb on - strand, within PFR28_00193 at 217.433 kb on - strand, within PFR28_00193 at 217.438 kb on + strand, within PFR28_00193 at 217.438 kb on + strand, within PFR28_00193 at 217.438 kb on + strand, within PFR28_00193 at 217.438 kb on + strand, within PFR28_00193 at 217.438 kb on + strand, within PFR28_00193 at 217.439 kb on - strand, within PFR28_00193 at 217.439 kb on - strand, within PFR28_00193 at 217.468 kb on + strand, within PFR28_00193 at 217.468 kb on + strand, within PFR28_00193 at 217.757 kb on - strand at 217.763 kb on - strand at 217.816 kb on + strand at 217.817 kb on - strand at 217.927 kb on + strand at 217.927 kb on + strand at 217.927 kb on + strand at 217.928 kb on - strand at 217.990 kb on - strand, within PFR28_00194 at 218.065 kb on + strand, within PFR28_00194 at 218.066 kb on - strand, within PFR28_00194 at 218.066 kb on - strand, within PFR28_00194 at 218.122 kb on + strand, within PFR28_00194 at 218.122 kb on + strand, within PFR28_00194 at 218.122 kb on + strand, within PFR28_00194 at 218.122 kb on + strand, within PFR28_00194 at 218.123 kb on - strand, within PFR28_00194 at 218.123 kb on - strand, within PFR28_00194 at 218.123 kb on - strand, within PFR28_00194 at 218.123 kb on - strand, within PFR28_00194 at 218.123 kb on - strand, within PFR28_00194 at 218.123 kb on - strand, within PFR28_00194 at 218.323 kb on + strand, within PFR28_00194 at 218.323 kb on + strand, within PFR28_00194 at 218.323 kb on + strand, within PFR28_00194 at 218.323 kb on + strand, within PFR28_00194 at 218.434 kb on + strand, within PFR28_00194 at 218.435 kb on - strand, within PFR28_00194 at 218.521 kb on + strand, within PFR28_00194 at 218.521 kb on + strand, within PFR28_00194 at 218.521 kb on + strand, within PFR28_00194 at 218.521 kb on + strand, within PFR28_00194 at 218.521 kb on + strand, within PFR28_00194 at 218.521 kb on + strand, within PFR28_00194 at 218.521 kb on + strand, within PFR28_00194 at 218.522 kb on - strand, within PFR28_00194
Per-strain Table
Position Strand Gene LocusTag Fraction trans-aconitic (C) 5 mM remove 215,857 + +0.2 215,857 + -0.1 215,857 + -1.5 215,857 + +0.0 215,858 - -0.1 215,858 - -0.5 215,858 - -0.5 215,858 - +1.0 215,859 + -0.6 215,859 + +1.9 215,860 - -0.6 215,860 - +1.1 215,860 - +1.0 215,860 - +0.3 215,889 - +0.5 215,892 + +0.1 215,892 + +0.3 215,892 + -0.9 215,892 + -2.9 215,893 - -0.9 215,893 - +0.6 215,893 - -2.3 215,893 - +0.8 215,893 - +0.0 215,893 - -1.1 215,913 - +0.0 215,913 - +0.2 215,974 + +0.7 215,974 + +0.5 215,996 + PFR28_00192 0.12 +0.4 215,997 - PFR28_00192 0.12 -0.7 216,106 + PFR28_00192 0.26 +0.4 216,107 - PFR28_00192 0.27 +0.1 216,107 - PFR28_00192 0.27 -1.8 216,107 - PFR28_00192 0.27 -0.0 216,107 - PFR28_00192 0.27 -1.0 216,196 + PFR28_00192 0.38 +0.1 216,197 - PFR28_00192 0.38 -0.2 216,451 + PFR28_00192 0.72 +0.2 216,451 + PFR28_00192 0.72 -1.0 216,451 + PFR28_00192 0.72 -1.6 216,451 + PFR28_00192 0.72 -0.8 216,451 + PFR28_00192 0.72 -0.4 216,451 + PFR28_00192 0.72 -0.6 216,451 + PFR28_00192 0.72 -0.6 216,451 + PFR28_00192 0.72 +0.9 216,451 + PFR28_00192 0.72 -1.0 216,452 - PFR28_00192 0.72 -0.7 216,452 - PFR28_00192 0.72 +1.1 216,452 - PFR28_00192 0.72 -0.1 216,452 - PFR28_00192 0.72 -0.5 216,452 - PFR28_00192 0.72 -1.9 216,487 + PFR28_00192 0.77 +0.3 216,487 + PFR28_00192 0.77 +0.7 216,488 - PFR28_00192 0.77 +1.0 216,488 - PFR28_00192 0.77 -0.3 216,604 + -0.2 216,605 - +0.2 216,605 - +0.3 216,605 - +0.7 216,669 + -0.3 216,669 + +0.4 216,669 + -0.4 216,669 + +0.0 216,669 + +0.2 216,669 + +0.4 216,669 + +0.0 216,669 + -0.3 216,669 + -0.3 216,669 + -0.8 216,669 + +0.1 216,669 + +0.8 216,670 - -0.8 216,670 - -0.7 216,670 - +0.3 216,670 - +0.2 216,670 - -0.3 216,670 - -0.1 216,670 - +0.7 216,670 - -0.2 216,670 - +0.1 216,670 - +0.1 216,670 - +0.3 216,670 - -0.4 216,670 - -0.7 216,670 - +0.5 216,671 + +1.1 216,672 - +0.2 216,672 - -0.1 216,672 - +0.3 216,672 - +0.3 216,672 - +0.6 216,710 + -0.2 216,737 + -0.5 216,738 - -1.0 216,738 - -2.5 216,768 + -0.2 216,768 + +0.9 216,769 - -1.8 216,786 + -0.6 216,786 + -1.4 216,786 + -0.4 216,786 + +0.0 216,787 - -1.0 216,824 + +0.9 216,824 + +0.3 216,824 + +0.7 216,843 - -2.7 216,843 - -1.5 216,943 + PFR28_00193 0.10 -1.1 216,943 + PFR28_00193 0.10 +1.6 216,944 - PFR28_00193 0.11 -2.1 216,944 - PFR28_00193 0.11 -3.1 217,060 + PFR28_00193 0.23 -1.9 217,060 + PFR28_00193 0.23 -0.7 217,060 + PFR28_00193 0.23 -1.6 217,061 - PFR28_00193 0.23 -1.4 217,061 - PFR28_00193 0.23 -2.1 217,061 - PFR28_00193 0.23 -4.8 217,219 + PFR28_00193 0.41 -1.3 217,219 + PFR28_00193 0.41 -2.1 217,219 + PFR28_00193 0.41 -3.5 217,219 + PFR28_00193 0.41 -2.2 217,219 + PFR28_00193 0.41 -3.2 217,219 + PFR28_00193 0.41 -4.5 217,220 - PFR28_00193 0.41 -1.9 217,220 - PFR28_00193 0.41 -2.0 217,220 - PFR28_00193 0.41 -2.8 217,220 - PFR28_00193 0.41 -2.4 217,220 - PFR28_00193 0.41 -2.0 217,220 - PFR28_00193 0.41 -2.8 217,220 - PFR28_00193 0.41 -3.1 217,220 - PFR28_00193 0.41 -2.9 217,355 - PFR28_00193 0.55 -1.9 217,432 + PFR28_00193 0.64 -2.6 217,432 + PFR28_00193 0.64 -1.5 217,432 + PFR28_00193 0.64 -1.9 217,432 + PFR28_00193 0.64 -0.6 217,432 + PFR28_00193 0.64 -3.9 217,432 + PFR28_00193 0.64 -3.2 217,432 + PFR28_00193 0.64 -2.2 217,432 + PFR28_00193 0.64 -3.3 217,432 + PFR28_00193 0.64 -1.5 217,433 - PFR28_00193 0.64 -1.8 217,433 - PFR28_00193 0.64 -1.3 217,433 - PFR28_00193 0.64 -1.6 217,433 - PFR28_00193 0.64 -1.2 217,433 - PFR28_00193 0.64 -1.2 217,438 + PFR28_00193 0.64 -3.9 217,438 + PFR28_00193 0.64 -3.0 217,438 + PFR28_00193 0.64 -2.7 217,438 + PFR28_00193 0.64 -1.1 217,438 + PFR28_00193 0.64 -3.1 217,439 - PFR28_00193 0.64 -2.1 217,439 - PFR28_00193 0.64 -2.9 217,468 + PFR28_00193 0.68 -2.5 217,468 + PFR28_00193 0.68 -1.9 217,757 - -2.5 217,763 - -1.7 217,816 + -2.3 217,817 - -2.0 217,927 + -0.4 217,927 + -2.2 217,927 + -2.3 217,928 - -4.1 217,990 - PFR28_00194 0.11 -1.1 218,065 + PFR28_00194 0.15 -3.0 218,066 - PFR28_00194 0.15 -2.8 218,066 - PFR28_00194 0.15 -2.0 218,122 + PFR28_00194 0.18 -2.4 218,122 + PFR28_00194 0.18 -1.9 218,122 + PFR28_00194 0.18 -1.6 218,122 + PFR28_00194 0.18 -1.0 218,123 - PFR28_00194 0.18 -1.9 218,123 - PFR28_00194 0.18 -2.7 218,123 - PFR28_00194 0.18 -2.9 218,123 - PFR28_00194 0.18 +0.0 218,123 - PFR28_00194 0.18 -1.8 218,123 - PFR28_00194 0.18 -2.4 218,323 + PFR28_00194 0.29 -2.5 218,323 + PFR28_00194 0.29 -2.9 218,323 + PFR28_00194 0.29 -2.6 218,323 + PFR28_00194 0.29 -2.4 218,434 + PFR28_00194 0.35 -0.9 218,435 - PFR28_00194 0.35 -1.8 218,521 + PFR28_00194 0.39 -0.9 218,521 + PFR28_00194 0.39 -1.6 218,521 + PFR28_00194 0.39 -0.7 218,521 + PFR28_00194 0.39 -1.3 218,521 + PFR28_00194 0.39 -1.4 218,521 + PFR28_00194 0.39 -1.9 218,521 + PFR28_00194 0.39 -1.5 218,522 - PFR28_00194 0.39 -2.1
Or see this region's nucleotide sequence