Strain Fitness in Pseudomonas sp. RS175 around PFR28_00186

Experiment: trans-aconitic (C) 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00185 and PFR28_00186 are separated by 255 nucleotidesPFR28_00186 and PFR28_00187 are separated by 122 nucleotides PFR28_00185: PFR28_00185 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 206,763 to 208,028 _00185 PFR28_00186: PFR28_00186 - ATP phosphoribosyltransferase, at 208,284 to 208,919 _00186 PFR28_00187: PFR28_00187 - Histidinol dehydrogenase, at 209,042 to 210,379 _00187 Position (kb) 208 209Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 208.027 kb on - strandat 208.027 kb on - strandat 208.141 kb on + strandat 208.141 kb on + strandat 208.141 kb on + strandat 208.141 kb on + strandat 208.141 kb on + strandat 208.142 kb on - strandat 208.142 kb on - strandat 208.142 kb on - strandat 208.259 kb on + strandat 208.259 kb on + strandat 208.259 kb on + strandat 208.259 kb on + strandat 208.260 kb on - strandat 208.260 kb on - strandat 208.260 kb on - strandat 208.455 kb on + strand, within PFR28_00186at 208.455 kb on + strand, within PFR28_00186at 208.455 kb on + strand, within PFR28_00186at 208.455 kb on + strand, within PFR28_00186at 208.456 kb on - strand, within PFR28_00186at 208.456 kb on - strand, within PFR28_00186at 208.456 kb on - strand, within PFR28_00186at 208.512 kb on + strand, within PFR28_00186at 208.650 kb on + strand, within PFR28_00186at 208.653 kb on + strand, within PFR28_00186at 208.654 kb on - strand, within PFR28_00186at 208.692 kb on + strand, within PFR28_00186at 208.692 kb on + strand, within PFR28_00186at 208.693 kb on - strand, within PFR28_00186at 208.962 kb on - strandat 208.962 kb on - strandat 208.999 kb on - strandat 208.999 kb on - strandat 208.999 kb on - strandat 209.027 kb on + strandat 209.027 kb on + strandat 209.027 kb on + strandat 209.028 kb on - strandat 209.028 kb on - strandat 209.042 kb on - strandat 209.351 kb on + strand, within PFR28_00187at 209.384 kb on + strand, within PFR28_00187at 209.401 kb on + strand, within PFR28_00187at 209.401 kb on + strand, within PFR28_00187at 209.401 kb on + strand, within PFR28_00187at 209.402 kb on - strand, within PFR28_00187at 209.402 kb on - strand, within PFR28_00187at 209.402 kb on - strand, within PFR28_00187at 209.402 kb on - strand, within PFR28_00187at 209.447 kb on + strand, within PFR28_00187at 209.447 kb on + strand, within PFR28_00187at 209.448 kb on - strand, within PFR28_00187at 209.705 kb on + strand, within PFR28_00187at 209.705 kb on + strand, within PFR28_00187at 209.705 kb on + strand, within PFR28_00187at 209.705 kb on + strand, within PFR28_00187at 209.705 kb on + strand, within PFR28_00187at 209.706 kb on - strand, within PFR28_00187at 209.706 kb on - strand, within PFR28_00187at 209.706 kb on - strand, within PFR28_00187at 209.706 kb on - strand, within PFR28_00187at 209.706 kb on - strand, within PFR28_00187at 209.706 kb on - strand, within PFR28_00187at 209.706 kb on - strand, within PFR28_00187at 209.706 kb on - strand, within PFR28_00187at 209.706 kb on - strand, within PFR28_00187at 209.784 kb on + strand, within PFR28_00187at 209.784 kb on + strand, within PFR28_00187at 209.784 kb on + strand, within PFR28_00187at 209.784 kb on + strand, within PFR28_00187at 209.784 kb on + strand, within PFR28_00187at 209.784 kb on + strand, within PFR28_00187at 209.785 kb on - strand, within PFR28_00187at 209.785 kb on - strand, within PFR28_00187at 209.785 kb on - strand, within PFR28_00187at 209.785 kb on - strand, within PFR28_00187at 209.785 kb on - strand, within PFR28_00187

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Per-strain Table

Position Strand Gene LocusTag Fraction trans-aconitic (C) 5 mM
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208,027 - -2.3
208,027 - -1.9
208,141 + -0.3
208,141 + +0.2
208,141 + +0.4
208,141 + -1.1
208,141 + +0.7
208,142 - -0.9
208,142 - -2.6
208,142 - -1.5
208,259 + -0.9
208,259 + -0.5
208,259 + -0.3
208,259 + -0.1
208,260 - -2.7
208,260 - -3.9
208,260 - -4.5
208,455 + PFR28_00186 0.27 -3.6
208,455 + PFR28_00186 0.27 -2.9
208,455 + PFR28_00186 0.27 -1.9
208,455 + PFR28_00186 0.27 -3.0
208,456 - PFR28_00186 0.27 -4.3
208,456 - PFR28_00186 0.27 -2.1
208,456 - PFR28_00186 0.27 -3.4
208,512 + PFR28_00186 0.36 -2.9
208,650 + PFR28_00186 0.58 -2.1
208,653 + PFR28_00186 0.58 -3.9
208,654 - PFR28_00186 0.58 -3.8
208,692 + PFR28_00186 0.64 -3.3
208,692 + PFR28_00186 0.64 -3.1
208,693 - PFR28_00186 0.64 -2.2
208,962 - -2.2
208,962 - -2.0
208,999 - -3.9
208,999 - -3.0
208,999 - -3.2
209,027 + -0.8
209,027 + -2.4
209,027 + -0.7
209,028 - -2.9
209,028 - -2.6
209,042 - -4.3
209,351 + PFR28_00187 0.23 -5.0
209,384 + PFR28_00187 0.26 -2.8
209,401 + PFR28_00187 0.27 -4.4
209,401 + PFR28_00187 0.27 -4.0
209,401 + PFR28_00187 0.27 -2.6
209,402 - PFR28_00187 0.27 -1.0
209,402 - PFR28_00187 0.27 -3.7
209,402 - PFR28_00187 0.27 -2.4
209,402 - PFR28_00187 0.27 -4.2
209,447 + PFR28_00187 0.30 -3.9
209,447 + PFR28_00187 0.30 -3.1
209,448 - PFR28_00187 0.30 -3.3
209,705 + PFR28_00187 0.50 -4.0
209,705 + PFR28_00187 0.50 -3.8
209,705 + PFR28_00187 0.50 -3.2
209,705 + PFR28_00187 0.50 -2.0
209,705 + PFR28_00187 0.50 -3.0
209,706 - PFR28_00187 0.50 -1.0
209,706 - PFR28_00187 0.50 -3.6
209,706 - PFR28_00187 0.50 -4.3
209,706 - PFR28_00187 0.50 -5.0
209,706 - PFR28_00187 0.50 -3.6
209,706 - PFR28_00187 0.50 -1.4
209,706 - PFR28_00187 0.50 -1.2
209,706 - PFR28_00187 0.50 -4.4
209,706 - PFR28_00187 0.50 -0.4
209,784 + PFR28_00187 0.55 -2.6
209,784 + PFR28_00187 0.55 -2.3
209,784 + PFR28_00187 0.55 -2.1
209,784 + PFR28_00187 0.55 -4.0
209,784 + PFR28_00187 0.55 -2.8
209,784 + PFR28_00187 0.55 -2.1
209,785 - PFR28_00187 0.56 -3.7
209,785 - PFR28_00187 0.56 -4.1
209,785 - PFR28_00187 0.56 -2.0
209,785 - PFR28_00187 0.56 -5.2
209,785 - PFR28_00187 0.56 -3.6

Or see this region's nucleotide sequence