Strain Fitness in Pseudomonas sp. RS175 around PFR28_00098

Experiment: trans-aconitic (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	trans-aconitic (C) 5 mM
108,451	+		PFR28_00096	0.70	-0.3
108,451	+		PFR28_00096	0.70	+0.2
108,451	+		PFR28_00096	0.70	+0.3
108,451	+		PFR28_00096	0.70	+0.0
108,451	+		PFR28_00096	0.70	+0.4
108,451	+		PFR28_00096	0.70	+0.4
108,451	+		PFR28_00096	0.70	-1.2
108,451	+		PFR28_00096	0.70	-0.6
108,451	+		PFR28_00096	0.70	-0.3
108,452	-		PFR28_00096	0.70	-1.1
108,452	-		PFR28_00096	0.70	-0.4
108,452	-		PFR28_00096	0.70	+0.3
108,452	-		PFR28_00096	0.70	+0.5
108,452	-		PFR28_00096	0.70	+0.7
108,455	+		PFR28_00096	0.70	+0.3
108,456	-		PFR28_00096	0.70	-1.3
108,456	-		PFR28_00096	0.70	+0.3
108,456	-		PFR28_00096	0.70	-1.2
108,496	+		PFR28_00096	0.78	-0.2
108,725	+				+0.3
108,725	+				-0.5
108,725	+				-0.1
108,725	+				-0.3
108,726	-				-0.7
108,726	-				-0.3
108,726	-				-0.1
108,726	-				-0.5
108,726	-				-0.1
108,726	-				-0.3
108,731	+				+0.8
108,731	+				+0.1
108,731	+				-0.3
108,731	+				-1.0
108,731	+				+0.6
108,731	+				+0.0
108,731	+				-0.9
108,732	-				-1.7
108,732	-				-0.7
108,754	+				-1.2
108,764	+				+0.9
108,764	+				+0.2
108,764	+				+0.5
108,764	+				+1.1
108,764	+				+0.9
108,764	+				+0.7
108,764	+				+1.4
108,764	+				+1.6
108,764	+				+0.6
108,764	+				-0.5
108,765	-				+0.2
108,765	-				+0.6
108,765	-				-0.3
108,765	-				-0.1
108,765	-				+0.4
108,765	-				+0.6
108,765	-				+0.2
108,765	-				-0.9
108,765	-				-2.7
108,765	-				+3.2
108,766	+				+0.1
108,766	+				+0.3
108,766	+				-0.3
108,767	-				-0.1
108,767	-				-1.3
108,767	-				+0.4
108,832	+				+1.6
108,973	+		PFR28_00097	0.18	-0.5
108,973	+		PFR28_00097	0.18	+0.2
108,974	-		PFR28_00097	0.18	+0.9
108,974	-		PFR28_00097	0.18	-0.5
108,984	+		PFR28_00097	0.21	+0.2
108,996	-		PFR28_00097	0.25	+1.2
108,996	-		PFR28_00097	0.25	+2.0
109,108	+		PFR28_00097	0.62	+0.6
109,108	+		PFR28_00097	0.62	+0.1
109,108	+		PFR28_00097	0.62	-0.4
109,108	+		PFR28_00097	0.62	-0.7
109,109	-		PFR28_00097	0.62	+0.8
109,109	-		PFR28_00097	0.62	+0.5
109,109	-		PFR28_00097	0.62	+0.0
109,196	-				+0.1
109,209	+				-0.9
109,209	+				-0.2
109,210	-				-0.4
109,331	+				-1.4
109,331	+				-2.9
109,331	+				-4.5
109,331	+				-2.7
109,331	+				-1.2
109,331	+				-2.1
109,331	+				-3.2
109,331	+				-2.8
109,331	+				-2.6
109,331	+				-2.0
109,332	-				-1.4
109,332	-				-2.8
109,332	-				-2.5
109,332	-				-2.7
109,365	+		PFR28_00098	0.12	-1.7
109,365	+		PFR28_00098	0.12	-0.4
109,365	+		PFR28_00098	0.12	-2.1
109,366	-		PFR28_00098	0.12	-2.0
109,366	-		PFR28_00098	0.12	-1.0
109,366	-		PFR28_00098	0.12	-2.1
109,366	-		PFR28_00098	0.12	-3.6
109,622	+		PFR28_00098	0.42	-3.2
109,623	-		PFR28_00098	0.42	-1.7
109,667	+		PFR28_00098	0.47	-1.1
109,667	+		PFR28_00098	0.47	-0.6
109,667	+		PFR28_00098	0.47	-0.7
109,667	+		PFR28_00098	0.47	-3.0
109,667	+		PFR28_00098	0.47	-1.3
109,667	+		PFR28_00098	0.47	-1.0
109,668	-		PFR28_00098	0.48	-3.0
109,668	-		PFR28_00098	0.48	-2.5
109,668	-		PFR28_00098	0.48	-1.9
109,668	-		PFR28_00098	0.48	-0.5
109,668	-		PFR28_00098	0.48	-2.3
109,897	+		PFR28_00098	0.75	-2.4
109,897	+		PFR28_00098	0.75	-3.0
109,897	+		PFR28_00098	0.75	-1.5
109,897	+		PFR28_00098	0.75	-0.1
110,101	+				-0.2
110,101	+				-0.7
110,102	-				-0.2
110,102	-				-0.2
110,102	-				-1.5
110,102	-				-0.3
110,102	-				-3.2
110,102	-				-2.5
110,102	-				-0.3
110,143	-				-0.9
110,143	-				+0.6
110,144	+				+0.0
110,144	+				+0.6
110,144	+				-0.3
110,144	+				-0.1
110,145	-				-0.5
110,145	-				-0.0
110,272	+				-1.0
110,273	-				+0.4
110,273	-				-0.3
110,273	-				-0.4
110,282	+				+0.1
110,282	+				-0.3
110,283	-				+0.4
110,283	-				+0.2
110,283	-				+0.2
110,283	-				-0.5
110,283	-				+0.7
110,283	-				-0.6
110,283	-				+0.0
110,372	+				+0.0
110,373	-				-2.6
110,424	+				-0.9
110,424	+				+0.1
110,424	+				+0.4
110,424	+				+0.3
110,424	+				-0.5
110,424	+				-0.7
110,425	-				-0.1
110,425	-				+1.0
110,425	-				+0.7
110,425	-				-0.1
110,425	-				+0.6
110,425	-				-0.7
110,447	-				+0.1
110,618	+				-0.2
110,618	+				+1.0
110,618	+				-0.9
110,619	-				-0.1
110,714	+		PFR28_00099	0.14	+1.6
110,714	+		PFR28_00099	0.14	-0.2
110,731	+		PFR28_00099	0.15	+0.1
110,731	+		PFR28_00099	0.15	+0.3
110,731	+		PFR28_00099	0.15	+0.6
110,732	-		PFR28_00099	0.15	+1.2
110,732	-		PFR28_00099	0.15	-0.4
110,732	-		PFR28_00099	0.15	-0.2
111,005	+		PFR28_00099	0.27	+0.9
111,005	+		PFR28_00099	0.27	+1.2
111,005	+		PFR28_00099	0.27	-0.2
111,005	+		PFR28_00099	0.27	+0.6
111,005	+		PFR28_00099	0.27	-0.6
111,005	+		PFR28_00099	0.27	-0.1
111,005	+		PFR28_00099	0.27	-0.7
111,005	+		PFR28_00099	0.27	-0.4
111,005	+		PFR28_00099	0.27	+0.6
111,005	+		PFR28_00099	0.27	+0.1
111,006	-		PFR28_00099	0.27	+0.4
111,006	-		PFR28_00099	0.27	-0.1
111,006	-		PFR28_00099	0.27	+0.1
111,006	-		PFR28_00099	0.27	+0.5
111,006	-		PFR28_00099	0.27	+0.1
111,032	+		PFR28_00099	0.28	+0.2
111,032	+		PFR28_00099	0.28	-0.4
111,033	-		PFR28_00099	0.28	+0.3