Experiment: Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS13105 and RPSI07_RS13110 are separated by 14 nucleotides RPSI07_RS13110 and RPSI07_RS13115 are separated by 2 nucleotides
RPSI07_RS13105: RPSI07_RS13105 - hydroxymethylbilane synthase, at 1,127,329 to 1,128,333
_RS13105
RPSI07_RS13110: RPSI07_RS13110 - fused uroporphyrinogen-III synthase HemD/membrane protein HemX, at 1,128,348 to 1,130,441
_RS13110
RPSI07_RS13115: RPSI07_RS13115 - heme biosynthesis protein HemY, at 1,130,444 to 1,131,637
_RS13115
Position (kb) 1128
1129
1130
1131 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 1129.435 kb on + strand, within RPSI07_RS13110 at 1129.435 kb on + strand, within RPSI07_RS13110 at 1129.435 kb on + strand, within RPSI07_RS13110 at 1129.435 kb on + strand, within RPSI07_RS13110 at 1129.436 kb on - strand, within RPSI07_RS13110 at 1129.436 kb on - strand, within RPSI07_RS13110 at 1129.436 kb on - strand, within RPSI07_RS13110 at 1129.723 kb on + strand, within RPSI07_RS13110 at 1129.723 kb on + strand, within RPSI07_RS13110 at 1129.723 kb on + strand, within RPSI07_RS13110 at 1129.723 kb on + strand, within RPSI07_RS13110 at 1129.723 kb on + strand, within RPSI07_RS13110 at 1129.723 kb on + strand, within RPSI07_RS13110 at 1129.724 kb on - strand, within RPSI07_RS13110 at 1130.455 kb on - strand at 1131.244 kb on + strand, within RPSI07_RS13115 at 1131.245 kb on + strand, within RPSI07_RS13115 at 1131.429 kb on - strand, within RPSI07_RS13115
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,129,435 + RPSI07_RS13110 0.52 +0.5 1,129,435 + RPSI07_RS13110 0.52 +0.4 1,129,435 + RPSI07_RS13110 0.52 +0.1 1,129,435 + RPSI07_RS13110 0.52 -1.5 1,129,436 - RPSI07_RS13110 0.52 +0.9 1,129,436 - RPSI07_RS13110 0.52 +0.4 1,129,436 - RPSI07_RS13110 0.52 +0.8 1,129,723 + RPSI07_RS13110 0.66 +0.4 1,129,723 + RPSI07_RS13110 0.66 +0.3 1,129,723 + RPSI07_RS13110 0.66 +0.5 1,129,723 + RPSI07_RS13110 0.66 +0.8 1,129,723 + RPSI07_RS13110 0.66 +0.9 1,129,723 + RPSI07_RS13110 0.66 +0.5 1,129,724 - RPSI07_RS13110 0.66 +0.4 1,130,455 - +4.3 1,131,244 + RPSI07_RS13115 0.67 +0.8 1,131,245 + RPSI07_RS13115 0.67 +0.7 1,131,429 - RPSI07_RS13115 0.82 +0.6
Or see this region's nucleotide sequence