Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS04350

Experiment: Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS04345 and RPSI07_RS04350 are separated by 51 nucleotidesRPSI07_RS04350 and RPSI07_RS04355 are separated by 120 nucleotides RPSI07_RS04345: RPSI07_RS04345 - LuxR family transcriptional regulator, at 1,171,075 to 1,171,848 _RS04345 RPSI07_RS04350: RPSI07_RS04350 - thiamine phosphate synthase, at 1,171,900 to 1,172,496 _RS04350 RPSI07_RS04355: RPSI07_RS04355 - MFS transporter, at 1,172,617 to 1,174,023 _RS04355 Position (kb) 1171 1172 1173Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1171.057 kb on - strandat 1171.117 kb on - strandat 1171.176 kb on + strand, within RPSI07_RS04345at 1171.177 kb on - strand, within RPSI07_RS04345at 1171.199 kb on + strand, within RPSI07_RS04345at 1171.248 kb on + strand, within RPSI07_RS04345at 1171.249 kb on - strand, within RPSI07_RS04345at 1171.261 kb on + strand, within RPSI07_RS04345at 1171.261 kb on + strand, within RPSI07_RS04345at 1171.262 kb on - strand, within RPSI07_RS04345at 1171.263 kb on + strand, within RPSI07_RS04345at 1171.273 kb on + strand, within RPSI07_RS04345at 1171.324 kb on + strand, within RPSI07_RS04345at 1171.324 kb on + strand, within RPSI07_RS04345at 1171.324 kb on + strand, within RPSI07_RS04345at 1171.333 kb on + strand, within RPSI07_RS04345at 1171.378 kb on + strand, within RPSI07_RS04345at 1171.379 kb on - strand, within RPSI07_RS04345at 1171.388 kb on - strand, within RPSI07_RS04345at 1171.483 kb on + strand, within RPSI07_RS04345at 1171.567 kb on + strand, within RPSI07_RS04345at 1171.568 kb on - strand, within RPSI07_RS04345at 1171.737 kb on - strand, within RPSI07_RS04345at 1171.843 kb on + strandat 1171.844 kb on - strandat 1172.082 kb on + strand, within RPSI07_RS04350at 1172.083 kb on - strand, within RPSI07_RS04350at 1172.083 kb on - strand, within RPSI07_RS04350at 1172.083 kb on - strand, within RPSI07_RS04350at 1172.157 kb on + strand, within RPSI07_RS04350at 1172.157 kb on + strand, within RPSI07_RS04350at 1172.157 kb on + strand, within RPSI07_RS04350at 1172.157 kb on + strand, within RPSI07_RS04350at 1172.157 kb on + strand, within RPSI07_RS04350at 1172.157 kb on + strand, within RPSI07_RS04350at 1172.158 kb on - strand, within RPSI07_RS04350at 1172.158 kb on - strand, within RPSI07_RS04350at 1172.158 kb on - strand, within RPSI07_RS04350at 1172.158 kb on - strand, within RPSI07_RS04350at 1172.158 kb on - strand, within RPSI07_RS04350at 1172.184 kb on + strand, within RPSI07_RS04350at 1172.184 kb on + strand, within RPSI07_RS04350at 1172.185 kb on - strand, within RPSI07_RS04350at 1172.388 kb on + strand, within RPSI07_RS04350at 1172.435 kb on + strand, within RPSI07_RS04350at 1172.468 kb on + strandat 1172.557 kb on + strandat 1172.557 kb on + strandat 1172.557 kb on + strandat 1172.628 kb on + strandat 1172.629 kb on - strandat 1172.629 kb on - strandat 1172.675 kb on + strandat 1172.749 kb on + strandat 1172.750 kb on - strandat 1172.750 kb on - strandat 1172.787 kb on + strand, within RPSI07_RS04355at 1172.787 kb on + strand, within RPSI07_RS04355at 1172.787 kb on + strand, within RPSI07_RS04355at 1172.788 kb on - strand, within RPSI07_RS04355at 1172.788 kb on - strand, within RPSI07_RS04355at 1172.788 kb on - strand, within RPSI07_RS04355at 1172.788 kb on - strand, within RPSI07_RS04355at 1172.789 kb on + strand, within RPSI07_RS04355at 1172.790 kb on - strand, within RPSI07_RS04355at 1172.790 kb on - strand, within RPSI07_RS04355at 1172.962 kb on - strand, within RPSI07_RS04355at 1172.963 kb on + strand, within RPSI07_RS04355at 1172.963 kb on + strand, within RPSI07_RS04355at 1172.963 kb on + strand, within RPSI07_RS04355at 1172.963 kb on + strand, within RPSI07_RS04355at 1172.963 kb on + strand, within RPSI07_RS04355at 1172.963 kb on + strand, within RPSI07_RS04355at 1172.963 kb on + strand, within RPSI07_RS04355at 1172.963 kb on + strand, within RPSI07_RS04355at 1172.963 kb on + strand, within RPSI07_RS04355at 1172.963 kb on + strand, within RPSI07_RS04355at 1172.963 kb on + strand, within RPSI07_RS04355at 1172.963 kb on + strand, within RPSI07_RS04355at 1172.963 kb on + strand, within RPSI07_RS04355at 1172.963 kb on + strand, within RPSI07_RS04355at 1172.963 kb on + strand, within RPSI07_RS04355at 1172.964 kb on - strand, within RPSI07_RS04355at 1172.964 kb on - strand, within RPSI07_RS04355at 1172.964 kb on - strand, within RPSI07_RS04355at 1172.964 kb on - strand, within RPSI07_RS04355at 1172.964 kb on - strand, within RPSI07_RS04355at 1172.964 kb on - strand, within RPSI07_RS04355at 1172.964 kb on - strand, within RPSI07_RS04355at 1173.092 kb on + strand, within RPSI07_RS04355at 1173.092 kb on + strand, within RPSI07_RS04355at 1173.092 kb on + strand, within RPSI07_RS04355at 1173.093 kb on - strand, within RPSI07_RS04355at 1173.119 kb on + strand, within RPSI07_RS04355at 1173.120 kb on - strand, within RPSI07_RS04355at 1173.154 kb on + strand, within RPSI07_RS04355at 1173.154 kb on + strand, within RPSI07_RS04355at 1173.204 kb on - strand, within RPSI07_RS04355at 1173.204 kb on - strand, within RPSI07_RS04355at 1173.306 kb on + strand, within RPSI07_RS04355at 1173.306 kb on + strand, within RPSI07_RS04355at 1173.306 kb on + strand, within RPSI07_RS04355at 1173.457 kb on + strand, within RPSI07_RS04355at 1173.458 kb on - strand, within RPSI07_RS04355

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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1,171,057 - +0.0
1,171,117 - +1.4
1,171,176 + RPSI07_RS04345 0.13 -1.2
1,171,177 - RPSI07_RS04345 0.13 +1.7
1,171,199 + RPSI07_RS04345 0.16 -0.3
1,171,248 + RPSI07_RS04345 0.22 -1.2
1,171,249 - RPSI07_RS04345 0.22 +0.3
1,171,261 + RPSI07_RS04345 0.24 +0.4
1,171,261 + RPSI07_RS04345 0.24 +0.8
1,171,262 - RPSI07_RS04345 0.24 +1.8
1,171,263 + RPSI07_RS04345 0.24 +1.3
1,171,273 + RPSI07_RS04345 0.26 -0.2
1,171,324 + RPSI07_RS04345 0.32 +0.7
1,171,324 + RPSI07_RS04345 0.32 +1.2
1,171,324 + RPSI07_RS04345 0.32 -1.8
1,171,333 + RPSI07_RS04345 0.33 +0.3
1,171,378 + RPSI07_RS04345 0.39 +0.3
1,171,379 - RPSI07_RS04345 0.39 +0.1
1,171,388 - RPSI07_RS04345 0.40 -0.1
1,171,483 + RPSI07_RS04345 0.53 +0.5
1,171,567 + RPSI07_RS04345 0.64 -0.6
1,171,568 - RPSI07_RS04345 0.64 -0.5
1,171,737 - RPSI07_RS04345 0.86 +0.2
1,171,843 + -2.6
1,171,844 - -0.2
1,172,082 + RPSI07_RS04350 0.30 +0.2
1,172,083 - RPSI07_RS04350 0.31 +0.8
1,172,083 - RPSI07_RS04350 0.31 +1.7
1,172,083 - RPSI07_RS04350 0.31 +1.1
1,172,157 + RPSI07_RS04350 0.43 +3.4
1,172,157 + RPSI07_RS04350 0.43 +1.2
1,172,157 + RPSI07_RS04350 0.43 +1.8
1,172,157 + RPSI07_RS04350 0.43 +0.5
1,172,157 + RPSI07_RS04350 0.43 +0.2
1,172,157 + RPSI07_RS04350 0.43 +0.3
1,172,158 - RPSI07_RS04350 0.43 +0.9
1,172,158 - RPSI07_RS04350 0.43 +0.9
1,172,158 - RPSI07_RS04350 0.43 +0.7
1,172,158 - RPSI07_RS04350 0.43 +1.0
1,172,158 - RPSI07_RS04350 0.43 +0.9
1,172,184 + RPSI07_RS04350 0.48 -0.8
1,172,184 + RPSI07_RS04350 0.48 +0.8
1,172,185 - RPSI07_RS04350 0.48 +1.2
1,172,388 + RPSI07_RS04350 0.82 -1.5
1,172,435 + RPSI07_RS04350 0.90 -0.0
1,172,468 + +1.5
1,172,557 + +0.3
1,172,557 + -0.8
1,172,557 + -0.2
1,172,628 + +1.4
1,172,629 - +0.3
1,172,629 - -1.2
1,172,675 + +0.1
1,172,749 + +0.6
1,172,750 - -1.1
1,172,750 - -0.1
1,172,787 + RPSI07_RS04355 0.12 +0.5
1,172,787 + RPSI07_RS04355 0.12 +0.9
1,172,787 + RPSI07_RS04355 0.12 -0.7
1,172,788 - RPSI07_RS04355 0.12 -0.8
1,172,788 - RPSI07_RS04355 0.12 +0.8
1,172,788 - RPSI07_RS04355 0.12 +0.8
1,172,788 - RPSI07_RS04355 0.12 -0.0
1,172,789 + RPSI07_RS04355 0.12 +0.6
1,172,790 - RPSI07_RS04355 0.12 -0.7
1,172,790 - RPSI07_RS04355 0.12 -1.2
1,172,962 - RPSI07_RS04355 0.25 -2.1
1,172,963 + RPSI07_RS04355 0.25 +1.1
1,172,963 + RPSI07_RS04355 0.25 -0.4
1,172,963 + RPSI07_RS04355 0.25 +2.2
1,172,963 + RPSI07_RS04355 0.25 +1.8
1,172,963 + RPSI07_RS04355 0.25 -0.4
1,172,963 + RPSI07_RS04355 0.25 -0.2
1,172,963 + RPSI07_RS04355 0.25 +0.6
1,172,963 + RPSI07_RS04355 0.25 -1.2
1,172,963 + RPSI07_RS04355 0.25 +1.2
1,172,963 + RPSI07_RS04355 0.25 -0.8
1,172,963 + RPSI07_RS04355 0.25 -0.2
1,172,963 + RPSI07_RS04355 0.25 -0.1
1,172,963 + RPSI07_RS04355 0.25 -0.1
1,172,963 + RPSI07_RS04355 0.25 +0.3
1,172,963 + RPSI07_RS04355 0.25 +1.3
1,172,964 - RPSI07_RS04355 0.25 +1.1
1,172,964 - RPSI07_RS04355 0.25 +0.0
1,172,964 - RPSI07_RS04355 0.25 -0.3
1,172,964 - RPSI07_RS04355 0.25 +0.3
1,172,964 - RPSI07_RS04355 0.25 +0.0
1,172,964 - RPSI07_RS04355 0.25 +0.3
1,172,964 - RPSI07_RS04355 0.25 -0.3
1,173,092 + RPSI07_RS04355 0.34 -0.3
1,173,092 + RPSI07_RS04355 0.34 +0.6
1,173,092 + RPSI07_RS04355 0.34 +0.3
1,173,093 - RPSI07_RS04355 0.34 +1.8
1,173,119 + RPSI07_RS04355 0.36 +0.5
1,173,120 - RPSI07_RS04355 0.36 -1.0
1,173,154 + RPSI07_RS04355 0.38 +0.6
1,173,154 + RPSI07_RS04355 0.38 +0.3
1,173,204 - RPSI07_RS04355 0.42 -0.8
1,173,204 - RPSI07_RS04355 0.42 +0.1
1,173,306 + RPSI07_RS04355 0.49 +0.7
1,173,306 + RPSI07_RS04355 0.49 +0.3
1,173,306 + RPSI07_RS04355 0.49 +0.1
1,173,457 + RPSI07_RS04355 0.60 +0.4
1,173,458 - RPSI07_RS04355 0.60 -1.0

Or see this region's nucleotide sequence