Experiment: Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS04345 and RPSI07_RS04350 are separated by 51 nucleotides RPSI07_RS04350 and RPSI07_RS04355 are separated by 120 nucleotides
RPSI07_RS04345: RPSI07_RS04345 - LuxR family transcriptional regulator, at 1,171,075 to 1,171,848
_RS04345
RPSI07_RS04350: RPSI07_RS04350 - thiamine phosphate synthase, at 1,171,900 to 1,172,496
_RS04350
RPSI07_RS04355: RPSI07_RS04355 - MFS transporter, at 1,172,617 to 1,174,023
_RS04355
Position (kb)
1171
1172
1173 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1171.057 kb on - strand at 1171.117 kb on - strand at 1171.176 kb on + strand, within RPSI07_RS04345 at 1171.177 kb on - strand, within RPSI07_RS04345 at 1171.199 kb on + strand, within RPSI07_RS04345 at 1171.248 kb on + strand, within RPSI07_RS04345 at 1171.249 kb on - strand, within RPSI07_RS04345 at 1171.261 kb on + strand, within RPSI07_RS04345 at 1171.261 kb on + strand, within RPSI07_RS04345 at 1171.262 kb on - strand, within RPSI07_RS04345 at 1171.263 kb on + strand, within RPSI07_RS04345 at 1171.273 kb on + strand, within RPSI07_RS04345 at 1171.324 kb on + strand, within RPSI07_RS04345 at 1171.324 kb on + strand, within RPSI07_RS04345 at 1171.324 kb on + strand, within RPSI07_RS04345 at 1171.333 kb on + strand, within RPSI07_RS04345 at 1171.378 kb on + strand, within RPSI07_RS04345 at 1171.379 kb on - strand, within RPSI07_RS04345 at 1171.388 kb on - strand, within RPSI07_RS04345 at 1171.483 kb on + strand, within RPSI07_RS04345 at 1171.567 kb on + strand, within RPSI07_RS04345 at 1171.568 kb on - strand, within RPSI07_RS04345 at 1171.737 kb on - strand, within RPSI07_RS04345 at 1171.843 kb on + strand at 1171.844 kb on - strand at 1172.082 kb on + strand, within RPSI07_RS04350 at 1172.083 kb on - strand, within RPSI07_RS04350 at 1172.083 kb on - strand, within RPSI07_RS04350 at 1172.083 kb on - strand, within RPSI07_RS04350 at 1172.157 kb on + strand, within RPSI07_RS04350 at 1172.157 kb on + strand, within RPSI07_RS04350 at 1172.157 kb on + strand, within RPSI07_RS04350 at 1172.157 kb on + strand, within RPSI07_RS04350 at 1172.157 kb on + strand, within RPSI07_RS04350 at 1172.157 kb on + strand, within RPSI07_RS04350 at 1172.158 kb on - strand, within RPSI07_RS04350 at 1172.158 kb on - strand, within RPSI07_RS04350 at 1172.158 kb on - strand, within RPSI07_RS04350 at 1172.158 kb on - strand, within RPSI07_RS04350 at 1172.158 kb on - strand, within RPSI07_RS04350 at 1172.184 kb on + strand, within RPSI07_RS04350 at 1172.184 kb on + strand, within RPSI07_RS04350 at 1172.185 kb on - strand, within RPSI07_RS04350 at 1172.388 kb on + strand, within RPSI07_RS04350 at 1172.435 kb on + strand, within RPSI07_RS04350 at 1172.468 kb on + strand at 1172.557 kb on + strand at 1172.557 kb on + strand at 1172.557 kb on + strand at 1172.628 kb on + strand at 1172.629 kb on - strand at 1172.629 kb on - strand at 1172.675 kb on + strand at 1172.749 kb on + strand at 1172.750 kb on - strand at 1172.750 kb on - strand at 1172.787 kb on + strand, within RPSI07_RS04355 at 1172.787 kb on + strand, within RPSI07_RS04355 at 1172.787 kb on + strand, within RPSI07_RS04355 at 1172.788 kb on - strand, within RPSI07_RS04355 at 1172.788 kb on - strand, within RPSI07_RS04355 at 1172.788 kb on - strand, within RPSI07_RS04355 at 1172.788 kb on - strand, within RPSI07_RS04355 at 1172.789 kb on + strand, within RPSI07_RS04355 at 1172.790 kb on - strand, within RPSI07_RS04355 at 1172.790 kb on - strand, within RPSI07_RS04355 at 1172.962 kb on - strand, within RPSI07_RS04355 at 1172.963 kb on + strand, within RPSI07_RS04355 at 1172.963 kb on + strand, within RPSI07_RS04355 at 1172.963 kb on + strand, within RPSI07_RS04355 at 1172.963 kb on + strand, within RPSI07_RS04355 at 1172.963 kb on + strand, within RPSI07_RS04355 at 1172.963 kb on + strand, within RPSI07_RS04355 at 1172.963 kb on + strand, within RPSI07_RS04355 at 1172.963 kb on + strand, within RPSI07_RS04355 at 1172.963 kb on + strand, within RPSI07_RS04355 at 1172.963 kb on + strand, within RPSI07_RS04355 at 1172.963 kb on + strand, within RPSI07_RS04355 at 1172.963 kb on + strand, within RPSI07_RS04355 at 1172.963 kb on + strand, within RPSI07_RS04355 at 1172.963 kb on + strand, within RPSI07_RS04355 at 1172.963 kb on + strand, within RPSI07_RS04355 at 1172.964 kb on - strand, within RPSI07_RS04355 at 1172.964 kb on - strand, within RPSI07_RS04355 at 1172.964 kb on - strand, within RPSI07_RS04355 at 1172.964 kb on - strand, within RPSI07_RS04355 at 1172.964 kb on - strand, within RPSI07_RS04355 at 1172.964 kb on - strand, within RPSI07_RS04355 at 1172.964 kb on - strand, within RPSI07_RS04355 at 1173.092 kb on + strand, within RPSI07_RS04355 at 1173.092 kb on + strand, within RPSI07_RS04355 at 1173.092 kb on + strand, within RPSI07_RS04355 at 1173.093 kb on - strand, within RPSI07_RS04355 at 1173.119 kb on + strand, within RPSI07_RS04355 at 1173.120 kb on - strand, within RPSI07_RS04355 at 1173.154 kb on + strand, within RPSI07_RS04355 at 1173.154 kb on + strand, within RPSI07_RS04355 at 1173.204 kb on - strand, within RPSI07_RS04355 at 1173.204 kb on - strand, within RPSI07_RS04355 at 1173.306 kb on + strand, within RPSI07_RS04355 at 1173.306 kb on + strand, within RPSI07_RS04355 at 1173.306 kb on + strand, within RPSI07_RS04355 at 1173.457 kb on + strand, within RPSI07_RS04355 at 1173.458 kb on - strand, within RPSI07_RS04355
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,171,057 - +0.0 1,171,117 - +1.4 1,171,176 + RPSI07_RS04345 0.13 -1.2 1,171,177 - RPSI07_RS04345 0.13 +1.7 1,171,199 + RPSI07_RS04345 0.16 -0.3 1,171,248 + RPSI07_RS04345 0.22 -1.2 1,171,249 - RPSI07_RS04345 0.22 +0.3 1,171,261 + RPSI07_RS04345 0.24 +0.4 1,171,261 + RPSI07_RS04345 0.24 +0.8 1,171,262 - RPSI07_RS04345 0.24 +1.8 1,171,263 + RPSI07_RS04345 0.24 +1.3 1,171,273 + RPSI07_RS04345 0.26 -0.2 1,171,324 + RPSI07_RS04345 0.32 +0.7 1,171,324 + RPSI07_RS04345 0.32 +1.2 1,171,324 + RPSI07_RS04345 0.32 -1.8 1,171,333 + RPSI07_RS04345 0.33 +0.3 1,171,378 + RPSI07_RS04345 0.39 +0.3 1,171,379 - RPSI07_RS04345 0.39 +0.1 1,171,388 - RPSI07_RS04345 0.40 -0.1 1,171,483 + RPSI07_RS04345 0.53 +0.5 1,171,567 + RPSI07_RS04345 0.64 -0.6 1,171,568 - RPSI07_RS04345 0.64 -0.5 1,171,737 - RPSI07_RS04345 0.86 +0.2 1,171,843 + -2.6 1,171,844 - -0.2 1,172,082 + RPSI07_RS04350 0.30 +0.2 1,172,083 - RPSI07_RS04350 0.31 +0.8 1,172,083 - RPSI07_RS04350 0.31 +1.7 1,172,083 - RPSI07_RS04350 0.31 +1.1 1,172,157 + RPSI07_RS04350 0.43 +3.4 1,172,157 + RPSI07_RS04350 0.43 +1.2 1,172,157 + RPSI07_RS04350 0.43 +1.8 1,172,157 + RPSI07_RS04350 0.43 +0.5 1,172,157 + RPSI07_RS04350 0.43 +0.2 1,172,157 + RPSI07_RS04350 0.43 +0.3 1,172,158 - RPSI07_RS04350 0.43 +0.9 1,172,158 - RPSI07_RS04350 0.43 +0.9 1,172,158 - RPSI07_RS04350 0.43 +0.7 1,172,158 - RPSI07_RS04350 0.43 +1.0 1,172,158 - RPSI07_RS04350 0.43 +0.9 1,172,184 + RPSI07_RS04350 0.48 -0.8 1,172,184 + RPSI07_RS04350 0.48 +0.8 1,172,185 - RPSI07_RS04350 0.48 +1.2 1,172,388 + RPSI07_RS04350 0.82 -1.5 1,172,435 + RPSI07_RS04350 0.90 -0.0 1,172,468 + +1.5 1,172,557 + +0.3 1,172,557 + -0.8 1,172,557 + -0.2 1,172,628 + +1.4 1,172,629 - +0.3 1,172,629 - -1.2 1,172,675 + +0.1 1,172,749 + +0.6 1,172,750 - -1.1 1,172,750 - -0.1 1,172,787 + RPSI07_RS04355 0.12 +0.5 1,172,787 + RPSI07_RS04355 0.12 +0.9 1,172,787 + RPSI07_RS04355 0.12 -0.7 1,172,788 - RPSI07_RS04355 0.12 -0.8 1,172,788 - RPSI07_RS04355 0.12 +0.8 1,172,788 - RPSI07_RS04355 0.12 +0.8 1,172,788 - RPSI07_RS04355 0.12 -0.0 1,172,789 + RPSI07_RS04355 0.12 +0.6 1,172,790 - RPSI07_RS04355 0.12 -0.7 1,172,790 - RPSI07_RS04355 0.12 -1.2 1,172,962 - RPSI07_RS04355 0.25 -2.1 1,172,963 + RPSI07_RS04355 0.25 +1.1 1,172,963 + RPSI07_RS04355 0.25 -0.4 1,172,963 + RPSI07_RS04355 0.25 +2.2 1,172,963 + RPSI07_RS04355 0.25 +1.8 1,172,963 + RPSI07_RS04355 0.25 -0.4 1,172,963 + RPSI07_RS04355 0.25 -0.2 1,172,963 + RPSI07_RS04355 0.25 +0.6 1,172,963 + RPSI07_RS04355 0.25 -1.2 1,172,963 + RPSI07_RS04355 0.25 +1.2 1,172,963 + RPSI07_RS04355 0.25 -0.8 1,172,963 + RPSI07_RS04355 0.25 -0.2 1,172,963 + RPSI07_RS04355 0.25 -0.1 1,172,963 + RPSI07_RS04355 0.25 -0.1 1,172,963 + RPSI07_RS04355 0.25 +0.3 1,172,963 + RPSI07_RS04355 0.25 +1.3 1,172,964 - RPSI07_RS04355 0.25 +1.1 1,172,964 - RPSI07_RS04355 0.25 +0.0 1,172,964 - RPSI07_RS04355 0.25 -0.3 1,172,964 - RPSI07_RS04355 0.25 +0.3 1,172,964 - RPSI07_RS04355 0.25 +0.0 1,172,964 - RPSI07_RS04355 0.25 +0.3 1,172,964 - RPSI07_RS04355 0.25 -0.3 1,173,092 + RPSI07_RS04355 0.34 -0.3 1,173,092 + RPSI07_RS04355 0.34 +0.6 1,173,092 + RPSI07_RS04355 0.34 +0.3 1,173,093 - RPSI07_RS04355 0.34 +1.8 1,173,119 + RPSI07_RS04355 0.36 +0.5 1,173,120 - RPSI07_RS04355 0.36 -1.0 1,173,154 + RPSI07_RS04355 0.38 +0.6 1,173,154 + RPSI07_RS04355 0.38 +0.3 1,173,204 - RPSI07_RS04355 0.42 -0.8 1,173,204 - RPSI07_RS04355 0.42 +0.1 1,173,306 + RPSI07_RS04355 0.49 +0.7 1,173,306 + RPSI07_RS04355 0.49 +0.3 1,173,306 + RPSI07_RS04355 0.49 +0.1 1,173,457 + RPSI07_RS04355 0.60 +0.4 1,173,458 - RPSI07_RS04355 0.60 -1.0
Or see this region's nucleotide sequence