Experiment: Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS03290 and RPSI07_RS03295 overlap by 68 nucleotides RPSI07_RS03295 and RPSI07_RS03300 are separated by 15 nucleotides
RPSI07_RS03290: RPSI07_RS03290 - translesion DNA synthesis-associated protein ImuA, at 896,678 to 897,613
_RS03290
RPSI07_RS03295: RPSI07_RS03295 - DNA polymerase Y family protein, at 897,546 to 899,117
_RS03295
RPSI07_RS03300: RPSI07_RS03300 - error-prone DNA polymerase, at 899,133 to 902,360
_RS03300
Position (kb) 897
898
899
900 Strain fitness (log2 ratio) -2
-1
0
1
2 at 896.637 kb on + strand at 897.039 kb on - strand, within RPSI07_RS03290 at 897.330 kb on + strand, within RPSI07_RS03290 at 897.332 kb on - strand, within RPSI07_RS03290 at 897.800 kb on - strand, within RPSI07_RS03295 at 898.252 kb on - strand, within RPSI07_RS03295 at 898.914 kb on + strand, within RPSI07_RS03295 at 898.915 kb on - strand, within RPSI07_RS03295 at 898.920 kb on + strand, within RPSI07_RS03295 at 898.920 kb on + strand, within RPSI07_RS03295 at 898.920 kb on + strand, within RPSI07_RS03295 at 898.921 kb on - strand, within RPSI07_RS03295 at 898.921 kb on - strand, within RPSI07_RS03295 at 898.921 kb on - strand, within RPSI07_RS03295 at 898.921 kb on - strand, within RPSI07_RS03295 at 898.923 kb on + strand, within RPSI07_RS03295 at 898.923 kb on + strand, within RPSI07_RS03295 at 898.923 kb on + strand, within RPSI07_RS03295 at 898.924 kb on - strand, within RPSI07_RS03295 at 899.004 kb on + strand at 899.004 kb on + strand at 899.005 kb on - strand at 899.005 kb on - strand at 899.005 kb on - strand at 899.005 kb on - strand at 899.005 kb on - strand at 899.005 kb on - strand at 899.037 kb on + strand at 899.172 kb on + strand at 899.172 kb on + strand at 899.173 kb on - strand at 899.490 kb on + strand, within RPSI07_RS03300 at 899.584 kb on - strand, within RPSI07_RS03300 at 899.797 kb on + strand, within RPSI07_RS03300 at 899.798 kb on - strand, within RPSI07_RS03300 at 899.798 kb on - strand, within RPSI07_RS03300 at 899.798 kb on - strand, within RPSI07_RS03300 at 899.901 kb on + strand, within RPSI07_RS03300 at 899.902 kb on - strand, within RPSI07_RS03300 at 899.985 kb on + strand, within RPSI07_RS03300 at 899.985 kb on + strand, within RPSI07_RS03300 at 899.985 kb on + strand, within RPSI07_RS03300 at 899.985 kb on + strand, within RPSI07_RS03300 at 899.986 kb on - strand, within RPSI07_RS03300 at 899.991 kb on + strand, within RPSI07_RS03300 at 899.992 kb on - strand, within RPSI07_RS03300 at 900.033 kb on + strand, within RPSI07_RS03300 at 900.033 kb on + strand, within RPSI07_RS03300
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 896,637 + -0.1 897,039 - RPSI07_RS03290 0.39 -0.4 897,330 + RPSI07_RS03290 0.70 -0.7 897,332 - RPSI07_RS03290 0.70 -1.4 897,800 - RPSI07_RS03295 0.16 +0.5 898,252 - RPSI07_RS03295 0.45 -0.9 898,914 + RPSI07_RS03295 0.87 -0.7 898,915 - RPSI07_RS03295 0.87 -0.6 898,920 + RPSI07_RS03295 0.87 -1.9 898,920 + RPSI07_RS03295 0.87 -0.6 898,920 + RPSI07_RS03295 0.87 +0.7 898,921 - RPSI07_RS03295 0.87 +0.1 898,921 - RPSI07_RS03295 0.87 -1.1 898,921 - RPSI07_RS03295 0.87 -0.4 898,921 - RPSI07_RS03295 0.87 -1.1 898,923 + RPSI07_RS03295 0.88 -0.6 898,923 + RPSI07_RS03295 0.88 -1.2 898,923 + RPSI07_RS03295 0.88 -1.9 898,924 - RPSI07_RS03295 0.88 +0.0 899,004 + +0.2 899,004 + +0.8 899,005 - +0.6 899,005 - -0.4 899,005 - +0.8 899,005 - +0.6 899,005 - +0.3 899,005 - +0.5 899,037 + +0.2 899,172 + -0.2 899,172 + +1.7 899,173 - +0.3 899,490 + RPSI07_RS03300 0.11 -0.5 899,584 - RPSI07_RS03300 0.14 -0.8 899,797 + RPSI07_RS03300 0.21 +1.8 899,798 - RPSI07_RS03300 0.21 -0.7 899,798 - RPSI07_RS03300 0.21 +1.0 899,798 - RPSI07_RS03300 0.21 -0.1 899,901 + RPSI07_RS03300 0.24 +0.3 899,902 - RPSI07_RS03300 0.24 -0.2 899,985 + RPSI07_RS03300 0.26 -0.8 899,985 + RPSI07_RS03300 0.26 -0.1 899,985 + RPSI07_RS03300 0.26 +0.6 899,985 + RPSI07_RS03300 0.26 -0.2 899,986 - RPSI07_RS03300 0.26 +0.3 899,991 + RPSI07_RS03300 0.27 +0.1 899,992 - RPSI07_RS03300 0.27 -0.3 900,033 + RPSI07_RS03300 0.28 -0.4 900,033 + RPSI07_RS03300 0.28 -0.3
Or see this region's nucleotide sequence