Strain Fitness in Pseudomonas sp. RS175 around PFR28_02033

Experiment: trans-aconitic (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	trans-aconitic (C) 5 mM
2,306,530	+				+0.6
2,306,531	-				-0.1
2,306,649	-		PFR28_02032	0.23	+0.5
2,306,746	+		PFR28_02032	0.34	-0.8
2,306,747	-		PFR28_02032	0.34	-0.1
2,306,813	+		PFR28_02032	0.41	+0.2
2,306,876	-		PFR28_02032	0.48	+2.1
2,306,876	-		PFR28_02032	0.48	+1.0
2,306,997	+		PFR28_02032	0.62	-0.6
2,306,997	+		PFR28_02032	0.62	+0.5
2,306,998	-		PFR28_02032	0.62	-1.7
2,306,998	-		PFR28_02032	0.62	+1.2
2,307,193	-		PFR28_02032	0.84	-0.3
2,307,193	-		PFR28_02032	0.84	+1.1
2,307,193	-		PFR28_02032	0.84	+0.7
2,307,335	-				-1.5
2,307,362	+				-2.7
2,307,362	+				+0.1
2,307,363	-				+0.7
2,307,363	-				+0.6
2,307,370	+				+1.3
2,307,370	+				-0.1
2,307,370	+				+0.0
2,307,370	+				-0.1
2,307,371	-				+0.2
2,307,374	+				-0.5
2,307,374	+				-2.0
2,307,374	+				+0.9
2,307,374	+				+1.0
2,307,374	+				+1.4
2,307,374	+				-0.6
2,307,375	-				+0.9
2,307,375	-				+0.4
2,307,375	-				+2.5
2,307,375	-				-0.4
2,307,375	-				-0.2
2,307,375	-				-0.3
2,307,375	-				-1.0
2,307,396	+				-0.3
2,307,396	+				-1.4
2,307,396	+				-0.2
2,307,397	-				-0.6
2,307,408	+				+1.1
2,307,408	+				-0.4
2,307,408	+				-1.0
2,307,409	-				-0.4
2,307,409	-				-0.3
2,307,409	-				-0.6
2,307,434	-				-0.2
2,307,443	+				+1.8
2,307,443	+				-2.2
2,307,443	+				-0.2
2,307,452	-				+0.9
2,307,452	-				-0.6
2,307,452	-				-0.5
2,307,556	+		PFR28_02033	0.21	-0.4
2,307,556	+		PFR28_02033	0.21	+0.7
2,307,556	+		PFR28_02033	0.21	+1.1
2,307,557	-		PFR28_02033	0.21	-0.5
2,307,589	+		PFR28_02033	0.28	+0.4
2,307,590	-		PFR28_02033	0.28	+1.2
2,307,591	+		PFR28_02033	0.29	-0.8
2,307,592	-		PFR28_02033	0.29	+0.7
2,307,592	-		PFR28_02033	0.29	+0.2
2,307,611	-		PFR28_02033	0.33	+1.5
2,307,715	-		PFR28_02033	0.56	-3.4
2,307,715	-		PFR28_02033	0.56	-1.3
2,307,793	+		PFR28_02033	0.74	+0.5
2,307,793	+		PFR28_02033	0.74	-0.5
2,307,794	-		PFR28_02033	0.74	+0.4
2,307,794	-		PFR28_02033	0.74	+1.3
2,307,794	-		PFR28_02033	0.74	-0.5
2,307,796	+		PFR28_02033	0.74	+0.3
2,307,796	+		PFR28_02033	0.74	+1.0
2,307,796	+		PFR28_02033	0.74	+0.4
2,307,796	+		PFR28_02033	0.74	+1.0
2,307,796	+		PFR28_02033	0.74	+1.4
2,307,796	+		PFR28_02033	0.74	+0.3
2,307,797	-		PFR28_02033	0.75	+0.6
2,307,797	-		PFR28_02033	0.75	+1.0
2,307,797	-		PFR28_02033	0.75	+0.7
2,307,797	-		PFR28_02033	0.75	-0.4
2,307,797	-		PFR28_02033	0.75	+1.0
2,307,797	-		PFR28_02033	0.75	+1.2
2,307,797	-		PFR28_02033	0.75	+0.4
2,307,797	-		PFR28_02033	0.75	+0.0
2,307,917	+				-0.3
2,307,918	-				+0.2
2,307,923	+				+1.0
2,307,924	-				+0.0
2,307,955	+				-0.8
2,307,968	+				-0.1
2,307,968	+				-0.0
2,307,969	-				-0.2
2,307,974	+				-0.2
2,307,975	-				+0.7
2,307,980	+				-0.7
2,307,992	+				-0.1
2,307,993	-				+1.5
2,307,993	-				-0.5
2,308,024	+				+0.4
2,308,024	+				+0.9
2,308,025	-				+0.4
2,308,025	-				-0.5
2,308,025	-				-0.4
2,308,025	-				+0.9
2,308,025	-				+0.1
2,308,069	-		PFR28_02034	0.13	-1.9
2,308,093	+		PFR28_02034	0.18	-1.5
2,308,093	+		PFR28_02034	0.18	-1.8
2,308,093	+		PFR28_02034	0.18	-1.4
2,308,093	+		PFR28_02034	0.18	-0.4
2,308,093	+		PFR28_02034	0.18	+0.2
2,308,094	-		PFR28_02034	0.19	-0.7
2,308,131	+		PFR28_02034	0.27	+0.8
2,308,131	+		PFR28_02034	0.27	+1.9
2,308,132	-		PFR28_02034	0.28	-0.4
2,308,160	-		PFR28_02034	0.34	-2.1
2,308,174	+		PFR28_02034	0.38	+0.0
2,308,174	+		PFR28_02034	0.38	-0.2
2,308,175	-		PFR28_02034	0.38	-0.5
2,308,175	-		PFR28_02034	0.38	-0.1
2,308,241	-		PFR28_02034	0.53	+0.5
2,308,378	+		PFR28_02034	0.86	+0.0
2,308,579	+		PFR28_02035	0.19	+0.1
2,308,579	+		PFR28_02035	0.19	+0.0
2,308,579	+		PFR28_02035	0.19	+0.7
2,308,579	+		PFR28_02035	0.19	+0.7
2,308,579	+		PFR28_02035	0.19	+0.5
2,308,580	-		PFR28_02035	0.19	+0.4
2,308,580	-		PFR28_02035	0.19	+1.0
2,308,695	+		PFR28_02035	0.35	-0.5
2,308,696	-		PFR28_02035	0.35	-0.7
2,308,696	-		PFR28_02035	0.35	-0.2
2,308,767	+		PFR28_02035	0.44	+0.2
2,308,768	-		PFR28_02035	0.44	+0.1
2,308,873	-		PFR28_02035	0.58	-1.9
2,308,873	-		PFR28_02035	0.58	+0.5
2,308,900	-		PFR28_02035	0.62	+0.2