Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3145

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3144 and Echvi_3145 are separated by 95 nucleotidesEchvi_3145 and Echvi_3146 are separated by 50 nucleotides Echvi_3144: Echvi_3144 - hypothetical protein, at 3,755,247 to 3,756,155 _3144 Echvi_3145: Echvi_3145 - hypothetical protein, at 3,756,251 to 3,756,673 _3145 Echvi_3146: Echvi_3146 - hypothetical protein, at 3,756,724 to 3,757,611 _3146 Position (kb) 3756 3757Strain fitness (log2 ratio) -2 -1 0 1 2at 3756.203 kb on - strandat 3756.237 kb on - strandat 3756.273 kb on + strandat 3756.327 kb on + strand, within Echvi_3145at 3756.331 kb on + strand, within Echvi_3145at 3756.347 kb on - strand, within Echvi_3145at 3756.357 kb on + strand, within Echvi_3145at 3756.361 kb on + strand, within Echvi_3145at 3756.361 kb on + strand, within Echvi_3145at 3756.362 kb on - strand, within Echvi_3145at 3756.363 kb on + strand, within Echvi_3145at 3756.363 kb on + strand, within Echvi_3145at 3756.363 kb on + strand, within Echvi_3145at 3756.364 kb on - strand, within Echvi_3145at 3756.364 kb on - strand, within Echvi_3145at 3756.364 kb on - strand, within Echvi_3145at 3756.436 kb on + strand, within Echvi_3145at 3756.441 kb on + strand, within Echvi_3145at 3756.441 kb on + strand, within Echvi_3145at 3756.441 kb on + strand, within Echvi_3145at 3756.441 kb on + strand, within Echvi_3145at 3756.442 kb on - strand, within Echvi_3145at 3756.442 kb on - strand, within Echvi_3145at 3756.558 kb on - strand, within Echvi_3145at 3756.563 kb on + strand, within Echvi_3145at 3756.563 kb on + strand, within Echvi_3145at 3756.565 kb on + strand, within Echvi_3145at 3756.614 kb on + strand, within Echvi_3145at 3756.615 kb on - strand, within Echvi_3145at 3756.616 kb on + strand, within Echvi_3145at 3756.617 kb on - strand, within Echvi_3145at 3756.617 kb on - strand, within Echvi_3145at 3756.703 kb on - strandat 3757.673 kb on - strandat 3757.673 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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3,756,203 - -0.5
3,756,237 - -0.1
3,756,273 + -0.7
3,756,327 + Echvi_3145 0.18 -0.9
3,756,331 + Echvi_3145 0.19 -0.6
3,756,347 - Echvi_3145 0.23 +0.5
3,756,357 + Echvi_3145 0.25 +0.0
3,756,361 + Echvi_3145 0.26 -0.2
3,756,361 + Echvi_3145 0.26 -0.6
3,756,362 - Echvi_3145 0.26 -0.9
3,756,363 + Echvi_3145 0.26 -0.4
3,756,363 + Echvi_3145 0.26 -0.1
3,756,363 + Echvi_3145 0.26 +0.7
3,756,364 - Echvi_3145 0.27 +2.4
3,756,364 - Echvi_3145 0.27 +0.6
3,756,364 - Echvi_3145 0.27 -1.5
3,756,436 + Echvi_3145 0.44 -0.1
3,756,441 + Echvi_3145 0.45 -1.1
3,756,441 + Echvi_3145 0.45 -1.5
3,756,441 + Echvi_3145 0.45 -1.4
3,756,441 + Echvi_3145 0.45 -2.6
3,756,442 - Echvi_3145 0.45 -2.1
3,756,442 - Echvi_3145 0.45 +0.0
3,756,558 - Echvi_3145 0.73 +1.1
3,756,563 + Echvi_3145 0.74 -0.9
3,756,563 + Echvi_3145 0.74 -0.8
3,756,565 + Echvi_3145 0.74 -0.6
3,756,614 + Echvi_3145 0.86 -1.5
3,756,615 - Echvi_3145 0.86 -0.6
3,756,616 + Echvi_3145 0.86 -1.2
3,756,617 - Echvi_3145 0.87 -0.6
3,756,617 - Echvi_3145 0.87 -1.6
3,756,703 - -0.8
3,757,673 - -0.1
3,757,673 - -0.7

Or see this region's nucleotide sequence