Experiment: m.b. Carbenicillin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2926 and Echvi_2927 are separated by 69 nucleotides Echvi_2927 and Echvi_2928 are separated by 10 nucleotides Echvi_2928 and Echvi_2929 are separated by 66 nucleotides
Echvi_2926: Echvi_2926 - Transketolase, C-terminal subunit, at 3,503,925 to 3,504,893
_2926
Echvi_2927: Echvi_2927 - Transketolase, N-terminal subunit, at 3,504,963 to 3,505,814
_2927
Echvi_2928: Echvi_2928 - Peroxiredoxin, at 3,505,825 to 3,506,274
_2928
Echvi_2929: Echvi_2929 - Membrane proteins related to metalloendopeptidases, at 3,506,341 to 3,508,182
_2929
Position (kb)
3504
3505
3506 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3505.915 kb on - strand, within Echvi_2928 at 3505.929 kb on + strand, within Echvi_2928 at 3505.929 kb on + strand, within Echvi_2928 at 3505.929 kb on + strand, within Echvi_2928 at 3505.930 kb on - strand, within Echvi_2928 at 3505.930 kb on - strand, within Echvi_2928 at 3505.930 kb on - strand, within Echvi_2928 at 3505.930 kb on - strand, within Echvi_2928 at 3505.930 kb on - strand, within Echvi_2928 at 3505.931 kb on + strand, within Echvi_2928 at 3505.931 kb on + strand, within Echvi_2928 at 3505.932 kb on - strand, within Echvi_2928 at 3505.932 kb on - strand, within Echvi_2928 at 3505.932 kb on - strand, within Echvi_2928 at 3505.973 kb on - strand, within Echvi_2928 at 3505.973 kb on - strand, within Echvi_2928 at 3505.982 kb on - strand, within Echvi_2928 at 3506.078 kb on - strand, within Echvi_2928 at 3506.085 kb on - strand, within Echvi_2928 at 3506.085 kb on - strand, within Echvi_2928 at 3506.109 kb on - strand, within Echvi_2928 at 3506.120 kb on - strand, within Echvi_2928 at 3506.165 kb on + strand, within Echvi_2928 at 3506.194 kb on - strand, within Echvi_2928 at 3506.209 kb on + strand, within Echvi_2928 at 3506.288 kb on - strand at 3506.370 kb on + strand at 3506.380 kb on - strand at 3506.392 kb on + strand at 3506.471 kb on - strand at 3506.542 kb on + strand, within Echvi_2929 at 3506.542 kb on + strand, within Echvi_2929 at 3506.578 kb on - strand, within Echvi_2929 at 3506.602 kb on + strand, within Echvi_2929 at 3506.676 kb on - strand, within Echvi_2929 at 3506.727 kb on - strand, within Echvi_2929 at 3506.769 kb on - strand, within Echvi_2929 at 3506.813 kb on + strand, within Echvi_2929 at 3506.814 kb on - strand, within Echvi_2929
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml remove 3,505,915 - Echvi_2928 0.20 +0.1 3,505,929 + Echvi_2928 0.23 +0.2 3,505,929 + Echvi_2928 0.23 +0.4 3,505,929 + Echvi_2928 0.23 -0.6 3,505,930 - Echvi_2928 0.23 +0.8 3,505,930 - Echvi_2928 0.23 +0.9 3,505,930 - Echvi_2928 0.23 -1.3 3,505,930 - Echvi_2928 0.23 +0.8 3,505,930 - Echvi_2928 0.23 +0.1 3,505,931 + Echvi_2928 0.24 +1.6 3,505,931 + Echvi_2928 0.24 -0.1 3,505,932 - Echvi_2928 0.24 +0.7 3,505,932 - Echvi_2928 0.24 +0.2 3,505,932 - Echvi_2928 0.24 -0.5 3,505,973 - Echvi_2928 0.33 -0.4 3,505,973 - Echvi_2928 0.33 +1.0 3,505,982 - Echvi_2928 0.35 +0.2 3,506,078 - Echvi_2928 0.56 -0.8 3,506,085 - Echvi_2928 0.58 +0.4 3,506,085 - Echvi_2928 0.58 +0.6 3,506,109 - Echvi_2928 0.63 +0.9 3,506,120 - Echvi_2928 0.66 +0.8 3,506,165 + Echvi_2928 0.76 +0.5 3,506,194 - Echvi_2928 0.82 -1.7 3,506,209 + Echvi_2928 0.85 +0.2 3,506,288 - +0.7 3,506,370 + +1.1 3,506,380 - +0.9 3,506,392 + -0.3 3,506,471 - +1.9 3,506,542 + Echvi_2929 0.11 +0.5 3,506,542 + Echvi_2929 0.11 -0.6 3,506,578 - Echvi_2929 0.13 -0.6 3,506,602 + Echvi_2929 0.14 -0.1 3,506,676 - Echvi_2929 0.18 +0.1 3,506,727 - Echvi_2929 0.21 +0.3 3,506,769 - Echvi_2929 0.23 -0.5 3,506,813 + Echvi_2929 0.26 +0.2 3,506,814 - Echvi_2929 0.26 -1.8
Or see this region's nucleotide sequence