Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2926

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2925 and Echvi_2926 are separated by 99 nucleotidesEchvi_2926 and Echvi_2927 are separated by 69 nucleotidesEchvi_2927 and Echvi_2928 are separated by 10 nucleotides Echvi_2925: Echvi_2925 - hypothetical protein, at 3,502,899 to 3,503,825 _2925 Echvi_2926: Echvi_2926 - Transketolase, C-terminal subunit, at 3,503,925 to 3,504,893 _2926 Echvi_2927: Echvi_2927 - Transketolase, N-terminal subunit, at 3,504,963 to 3,505,814 _2927 Echvi_2928: Echvi_2928 - Peroxiredoxin, at 3,505,825 to 3,506,274 _2928 Position (kb) 3503 3504 3505Strain fitness (log2 ratio) -2 -1 0 1at 3502.927 kb on + strandat 3502.930 kb on + strandat 3502.939 kb on - strandat 3502.961 kb on + strandat 3502.961 kb on + strandat 3502.961 kb on + strandat 3502.961 kb on + strandat 3502.961 kb on + strandat 3502.961 kb on + strandat 3502.961 kb on + strandat 3502.962 kb on - strandat 3502.962 kb on - strandat 3502.962 kb on - strandat 3502.965 kb on + strandat 3502.989 kb on - strandat 3503.151 kb on + strand, within Echvi_2925at 3503.151 kb on + strand, within Echvi_2925at 3503.176 kb on - strand, within Echvi_2925at 3503.376 kb on + strand, within Echvi_2925at 3503.377 kb on - strand, within Echvi_2925at 3503.407 kb on - strand, within Echvi_2925at 3503.427 kb on + strand, within Echvi_2925at 3503.535 kb on + strand, within Echvi_2925at 3503.535 kb on + strand, within Echvi_2925at 3503.536 kb on - strand, within Echvi_2925at 3503.536 kb on - strand, within Echvi_2925at 3503.536 kb on - strand, within Echvi_2925at 3503.536 kb on - strand, within Echvi_2925at 3503.539 kb on + strand, within Echvi_2925at 3503.540 kb on - strand, within Echvi_2925at 3503.541 kb on + strand, within Echvi_2925at 3503.541 kb on + strand, within Echvi_2925at 3503.542 kb on - strand, within Echvi_2925at 3503.542 kb on - strand, within Echvi_2925at 3503.542 kb on - strand, within Echvi_2925at 3503.607 kb on + strand, within Echvi_2925at 3503.607 kb on + strand, within Echvi_2925at 3503.641 kb on + strand, within Echvi_2925at 3503.642 kb on - strand, within Echvi_2925at 3503.642 kb on - strand, within Echvi_2925at 3503.642 kb on - strand, within Echvi_2925at 3503.642 kb on - strand, within Echvi_2925at 3503.765 kb on + strandat 3503.846 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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3,502,927 + +1.4
3,502,930 + +0.8
3,502,939 - -0.9
3,502,961 + -0.2
3,502,961 + +1.3
3,502,961 + -0.4
3,502,961 + -2.0
3,502,961 + -1.1
3,502,961 + -0.4
3,502,961 + -0.9
3,502,962 - +0.2
3,502,962 - +0.0
3,502,962 - -0.9
3,502,965 + +0.8
3,502,989 - -0.5
3,503,151 + Echvi_2925 0.27 +0.1
3,503,151 + Echvi_2925 0.27 +0.3
3,503,176 - Echvi_2925 0.30 -0.2
3,503,376 + Echvi_2925 0.51 -0.5
3,503,377 - Echvi_2925 0.52 -0.5
3,503,407 - Echvi_2925 0.55 -1.1
3,503,427 + Echvi_2925 0.57 -0.6
3,503,535 + Echvi_2925 0.69 -0.2
3,503,535 + Echvi_2925 0.69 -1.3
3,503,536 - Echvi_2925 0.69 -0.4
3,503,536 - Echvi_2925 0.69 -0.3
3,503,536 - Echvi_2925 0.69 -0.4
3,503,536 - Echvi_2925 0.69 +0.1
3,503,539 + Echvi_2925 0.69 -0.2
3,503,540 - Echvi_2925 0.69 -0.3
3,503,541 + Echvi_2925 0.69 -0.3
3,503,541 + Echvi_2925 0.69 +0.5
3,503,542 - Echvi_2925 0.69 +0.5
3,503,542 - Echvi_2925 0.69 -0.4
3,503,542 - Echvi_2925 0.69 -0.6
3,503,607 + Echvi_2925 0.76 -0.2
3,503,607 + Echvi_2925 0.76 -0.8
3,503,641 + Echvi_2925 0.80 +0.5
3,503,642 - Echvi_2925 0.80 -1.3
3,503,642 - Echvi_2925 0.80 -1.3
3,503,642 - Echvi_2925 0.80 -0.9
3,503,642 - Echvi_2925 0.80 +0.4
3,503,765 + -0.4
3,503,846 - +0.7

Or see this region's nucleotide sequence