Experiment: m.b. Carbenicillin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2505 and Echvi_2506 are separated by 74 nucleotides Echvi_2506 and Echvi_2507 are separated by 183 nucleotides Echvi_2507 and Echvi_2508 are separated by 3 nucleotides Echvi_2508 and Echvi_2509 are separated by 3 nucleotides
Echvi_2505: Echvi_2505 - S23 ribosomal protein., at 2,978,004 to 2,978,384
_2505
Echvi_2506: Echvi_2506 - glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase, at 2,978,459 to 2,979,028
_2506
Echvi_2507: Echvi_2507 - anthranilate phosphoribosyltransferase, at 2,979,212 to 2,980,228
_2507
Echvi_2508: Echvi_2508 - Indole-3-glycerol phosphate synthase, at 2,980,232 to 2,981,050
_2508
Echvi_2509: Echvi_2509 - Phosphoribosylanthranilate isomerase, at 2,981,054 to 2,981,674
_2509
Position (kb)
2979
2980
2981 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2978.215 kb on - strand, within Echvi_2505 at 2978.261 kb on - strand, within Echvi_2505 at 2978.293 kb on - strand, within Echvi_2505 at 2978.453 kb on + strand at 2978.454 kb on - strand at 2978.455 kb on + strand at 2978.466 kb on + strand at 2978.472 kb on + strand at 2978.512 kb on + strand at 2978.666 kb on + strand, within Echvi_2506 at 2978.843 kb on + strand, within Echvi_2506 at 2978.892 kb on + strand, within Echvi_2506 at 2978.920 kb on + strand, within Echvi_2506 at 2978.943 kb on - strand, within Echvi_2506 at 2979.018 kb on + strand at 2979.019 kb on - strand at 2979.031 kb on - strand at 2979.053 kb on - strand at 2979.063 kb on - strand at 2979.089 kb on + strand at 2979.115 kb on + strand at 2979.475 kb on + strand, within Echvi_2507 at 2979.736 kb on + strand, within Echvi_2507 at 2979.875 kb on + strand, within Echvi_2507 at 2980.239 kb on + strand at 2980.993 kb on + strand at 2980.993 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml remove 2,978,215 - Echvi_2505 0.55 +2.2 2,978,261 - Echvi_2505 0.67 +1.8 2,978,293 - Echvi_2505 0.76 +2.4 2,978,453 + -0.5 2,978,454 - +3.8 2,978,455 + +0.3 2,978,466 + +3.7 2,978,472 + +2.6 2,978,512 + +4.3 2,978,666 + Echvi_2506 0.36 +4.0 2,978,843 + Echvi_2506 0.67 +4.1 2,978,892 + Echvi_2506 0.76 +3.5 2,978,920 + Echvi_2506 0.81 +4.2 2,978,943 - Echvi_2506 0.85 +3.6 2,979,018 + +0.7 2,979,019 - +2.0 2,979,031 - +1.9 2,979,053 - +2.2 2,979,063 - +1.1 2,979,089 + -1.1 2,979,115 + +3.7 2,979,475 + Echvi_2507 0.26 +0.7 2,979,736 + Echvi_2507 0.52 +0.2 2,979,875 + Echvi_2507 0.65 +1.1 2,980,239 + -1.1 2,980,993 + -0.5 2,980,993 + +0.5
Or see this region's nucleotide sequence