Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2506

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2504 and Echvi_2505 are separated by 37 nucleotidesEchvi_2505 and Echvi_2506 are separated by 74 nucleotidesEchvi_2506 and Echvi_2507 are separated by 183 nucleotides Echvi_2504: Echvi_2504 - Anthranilate/para-aminobenzoate synthases component I, at 2,976,557 to 2,977,966 _2504 Echvi_2505: Echvi_2505 - S23 ribosomal protein., at 2,978,004 to 2,978,384 _2505 Echvi_2506: Echvi_2506 - glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase, at 2,978,459 to 2,979,028 _2506 Echvi_2507: Echvi_2507 - anthranilate phosphoribosyltransferase, at 2,979,212 to 2,980,228 _2507 Position (kb) 2978 2979 2980Strain fitness (log2 ratio) -1 0 1 2 3 4at 2978.080 kb on + strand, within Echvi_2505at 2978.162 kb on - strand, within Echvi_2505at 2978.162 kb on - strand, within Echvi_2505at 2978.178 kb on + strand, within Echvi_2505at 2978.199 kb on - strand, within Echvi_2505at 2978.210 kb on + strand, within Echvi_2505at 2978.215 kb on - strand, within Echvi_2505at 2978.261 kb on - strand, within Echvi_2505at 2978.293 kb on - strand, within Echvi_2505at 2978.453 kb on + strandat 2978.454 kb on - strandat 2978.455 kb on + strandat 2978.466 kb on + strandat 2978.472 kb on + strandat 2978.512 kb on + strandat 2978.666 kb on + strand, within Echvi_2506at 2978.843 kb on + strand, within Echvi_2506at 2978.892 kb on + strand, within Echvi_2506at 2978.920 kb on + strand, within Echvi_2506at 2978.943 kb on - strand, within Echvi_2506at 2979.018 kb on + strandat 2979.019 kb on - strandat 2979.031 kb on - strandat 2979.053 kb on - strandat 2979.063 kb on - strandat 2979.089 kb on + strandat 2979.115 kb on + strandat 2979.475 kb on + strand, within Echvi_2507at 2979.736 kb on + strand, within Echvi_2507at 2979.875 kb on + strand, within Echvi_2507

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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2,978,080 + Echvi_2505 0.20 +0.4
2,978,162 - Echvi_2505 0.41 +1.8
2,978,162 - Echvi_2505 0.41 +3.3
2,978,178 + Echvi_2505 0.46 +0.5
2,978,199 - Echvi_2505 0.51 +2.8
2,978,210 + Echvi_2505 0.54 -1.2
2,978,215 - Echvi_2505 0.55 +2.2
2,978,261 - Echvi_2505 0.67 +1.8
2,978,293 - Echvi_2505 0.76 +2.4
2,978,453 + -0.5
2,978,454 - +3.8
2,978,455 + +0.3
2,978,466 + +3.7
2,978,472 + +2.6
2,978,512 + +4.3
2,978,666 + Echvi_2506 0.36 +4.0
2,978,843 + Echvi_2506 0.67 +4.1
2,978,892 + Echvi_2506 0.76 +3.5
2,978,920 + Echvi_2506 0.81 +4.2
2,978,943 - Echvi_2506 0.85 +3.6
2,979,018 + +0.7
2,979,019 - +2.0
2,979,031 - +1.9
2,979,053 - +2.2
2,979,063 - +1.1
2,979,089 + -1.1
2,979,115 + +3.7
2,979,475 + Echvi_2507 0.26 +0.7
2,979,736 + Echvi_2507 0.52 +0.2
2,979,875 + Echvi_2507 0.65 +1.1

Or see this region's nucleotide sequence