Experiment: m.b. Carbenicillin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1847 and Echvi_1848 are separated by 18 nucleotides Echvi_1848 and Echvi_1849 are separated by 67 nucleotides Echvi_1849 and Echvi_1850 are separated by 499 nucleotides
Echvi_1847: Echvi_1847 - periplasmic glucoside 3-dehydrogenase (lacA subunit) (EC 1.1.99.13) (from data) , at 2,162,810 to 2,164,489
_1847
Echvi_1848: Echvi_1848 - periplasmic glucoside 3-dehydrogenase (lacC subunit) (EC 1.1.99.13) (from data) , at 2,164,508 to 2,165,059
_1848
Echvi_1849: Echvi_1849 - Sugar phosphate isomerases/epimerases, at 2,165,127 to 2,166,035
_1849
Echvi_1850: Echvi_1850 - Bacterial SH3 domain., at 2,166,535 to 2,167,260
_1850
Position (kb)
2165
2166
2167 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2164.133 kb on + strand, within Echvi_1847 at 2164.133 kb on + strand, within Echvi_1847 at 2164.133 kb on + strand, within Echvi_1847 at 2164.133 kb on + strand, within Echvi_1847 at 2164.133 kb on + strand at 2164.133 kb on + strand, within Echvi_1847 at 2164.134 kb on - strand, within Echvi_1847 at 2164.134 kb on - strand, within Echvi_1847 at 2164.134 kb on - strand, within Echvi_1847 at 2164.134 kb on - strand, within Echvi_1847 at 2164.134 kb on - strand, within Echvi_1847 at 2164.134 kb on - strand, within Echvi_1847 at 2164.134 kb on - strand, within Echvi_1847 at 2164.184 kb on - strand, within Echvi_1847 at 2164.243 kb on + strand, within Echvi_1847 at 2164.243 kb on + strand, within Echvi_1847 at 2164.244 kb on - strand, within Echvi_1847 at 2164.244 kb on - strand, within Echvi_1847 at 2164.248 kb on - strand, within Echvi_1847 at 2164.261 kb on + strand, within Echvi_1847 at 2164.261 kb on + strand, within Echvi_1847 at 2164.262 kb on - strand, within Echvi_1847 at 2164.262 kb on - strand, within Echvi_1847 at 2164.347 kb on + strand at 2164.347 kb on + strand at 2164.348 kb on - strand at 2164.348 kb on - strand at 2164.348 kb on - strand at 2164.425 kb on - strand at 2164.425 kb on - strand at 2164.426 kb on + strand at 2164.427 kb on - strand at 2164.503 kb on + strand at 2164.503 kb on + strand at 2164.504 kb on - strand at 2164.504 kb on - strand at 2164.569 kb on + strand, within Echvi_1848 at 2164.569 kb on + strand, within Echvi_1848 at 2164.569 kb on + strand, within Echvi_1848 at 2164.597 kb on + strand, within Echvi_1848 at 2164.597 kb on + strand, within Echvi_1848 at 2164.597 kb on + strand, within Echvi_1848 at 2164.676 kb on - strand, within Echvi_1848 at 2164.676 kb on - strand, within Echvi_1848 at 2164.676 kb on - strand, within Echvi_1848 at 2164.676 kb on - strand, within Echvi_1848 at 2164.681 kb on + strand, within Echvi_1848 at 2164.682 kb on - strand, within Echvi_1848 at 2164.684 kb on + strand, within Echvi_1848 at 2164.684 kb on + strand, within Echvi_1848 at 2164.684 kb on + strand, within Echvi_1848 at 2164.726 kb on + strand, within Echvi_1848 at 2164.726 kb on + strand, within Echvi_1848 at 2164.726 kb on + strand, within Echvi_1848 at 2164.727 kb on - strand, within Echvi_1848 at 2164.727 kb on - strand, within Echvi_1848 at 2164.731 kb on + strand, within Echvi_1848 at 2164.732 kb on - strand, within Echvi_1848 at 2164.747 kb on + strand, within Echvi_1848 at 2164.751 kb on + strand, within Echvi_1848 at 2164.752 kb on - strand, within Echvi_1848 at 2164.778 kb on - strand, within Echvi_1848 at 2164.778 kb on - strand, within Echvi_1848 at 2164.810 kb on + strand, within Echvi_1848 at 2164.866 kb on - strand, within Echvi_1848 at 2164.873 kb on + strand, within Echvi_1848 at 2164.874 kb on - strand, within Echvi_1848 at 2164.909 kb on + strand, within Echvi_1848 at 2164.910 kb on - strand, within Echvi_1848 at 2164.910 kb on - strand, within Echvi_1848 at 2164.910 kb on - strand, within Echvi_1848 at 2164.910 kb on - strand, within Echvi_1848 at 2164.910 kb on - strand, within Echvi_1848 at 2164.914 kb on - strand, within Echvi_1848 at 2164.914 kb on - strand, within Echvi_1848 at 2164.954 kb on + strand, within Echvi_1848 at 2164.954 kb on + strand, within Echvi_1848 at 2164.955 kb on - strand, within Echvi_1848 at 2165.020 kb on + strand at 2165.021 kb on - strand at 2165.022 kb on + strand at 2165.023 kb on - strand at 2165.023 kb on - strand at 2165.023 kb on - strand at 2165.023 kb on - strand at 2165.023 kb on - strand at 2165.028 kb on - strand at 2165.028 kb on - strand at 2165.101 kb on + strand at 2165.109 kb on + strand at 2165.109 kb on + strand at 2165.124 kb on - strand at 2165.126 kb on + strand at 2165.168 kb on + strand at 2165.288 kb on - strand, within Echvi_1849 at 2165.312 kb on + strand, within Echvi_1849 at 2165.313 kb on - strand, within Echvi_1849 at 2165.313 kb on - strand, within Echvi_1849 at 2165.313 kb on - strand, within Echvi_1849 at 2165.313 kb on - strand, within Echvi_1849 at 2165.362 kb on - strand, within Echvi_1849 at 2165.362 kb on - strand, within Echvi_1849 at 2165.391 kb on - strand, within Echvi_1849 at 2165.391 kb on - strand, within Echvi_1849 at 2165.525 kb on + strand at 2165.532 kb on + strand, within Echvi_1849 at 2165.547 kb on + strand, within Echvi_1849 at 2165.547 kb on + strand, within Echvi_1849 at 2165.551 kb on + strand, within Echvi_1849 at 2165.600 kb on + strand, within Echvi_1849 at 2165.603 kb on + strand, within Echvi_1849 at 2165.604 kb on - strand, within Echvi_1849 at 2165.604 kb on - strand, within Echvi_1849 at 2165.604 kb on - strand, within Echvi_1849 at 2165.608 kb on + strand, within Echvi_1849 at 2165.608 kb on + strand, within Echvi_1849 at 2165.663 kb on + strand, within Echvi_1849 at 2165.664 kb on - strand, within Echvi_1849 at 2165.664 kb on - strand, within Echvi_1849 at 2165.664 kb on - strand, within Echvi_1849 at 2165.748 kb on - strand, within Echvi_1849 at 2165.751 kb on + strand, within Echvi_1849 at 2165.788 kb on - strand, within Echvi_1849 at 2165.864 kb on + strand, within Echvi_1849 at 2165.864 kb on + strand, within Echvi_1849 at 2165.864 kb on + strand, within Echvi_1849 at 2165.865 kb on - strand, within Echvi_1849 at 2165.865 kb on - strand, within Echvi_1849 at 2165.895 kb on - strand, within Echvi_1849 at 2165.895 kb on - strand, within Echvi_1849 at 2165.901 kb on + strand, within Echvi_1849 at 2165.901 kb on + strand, within Echvi_1849 at 2165.915 kb on - strand, within Echvi_1849 at 2165.948 kb on + strand at 2165.948 kb on + strand at 2165.949 kb on - strand at 2165.949 kb on - strand at 2166.013 kb on - strand at 2166.013 kb on - strand at 2166.025 kb on + strand at 2166.026 kb on - strand at 2166.031 kb on + strand at 2166.031 kb on + strand at 2166.043 kb on + strand at 2166.044 kb on - strand at 2166.044 kb on - strand at 2166.099 kb on - strand at 2166.099 kb on - strand at 2166.103 kb on - strand at 2166.103 kb on - strand at 2166.106 kb on + strand at 2166.115 kb on + strand at 2166.115 kb on + strand at 2166.116 kb on - strand at 2166.174 kb on - strand at 2166.186 kb on + strand at 2166.236 kb on - strand at 2166.236 kb on - strand at 2166.244 kb on + strand at 2166.245 kb on - strand at 2166.260 kb on + strand at 2166.286 kb on - strand at 2166.288 kb on + strand at 2166.294 kb on + strand at 2166.332 kb on + strand at 2166.332 kb on + strand at 2166.332 kb on + strand at 2166.333 kb on - strand at 2166.333 kb on - strand at 2166.333 kb on - strand at 2166.334 kb on + strand at 2166.335 kb on - strand at 2166.381 kb on + strand at 2166.448 kb on - strand at 2166.507 kb on + strand at 2166.507 kb on + strand at 2166.508 kb on - strand at 2166.538 kb on + strand at 2166.539 kb on - strand at 2166.594 kb on + strand at 2166.594 kb on + strand at 2166.673 kb on - strand, within Echvi_1850 at 2166.706 kb on + strand, within Echvi_1850 at 2166.747 kb on + strand, within Echvi_1850 at 2166.747 kb on + strand, within Echvi_1850 at 2166.748 kb on - strand, within Echvi_1850 at 2166.748 kb on - strand, within Echvi_1850 at 2166.762 kb on + strand, within Echvi_1850 at 2166.786 kb on - strand, within Echvi_1850 at 2166.876 kb on - strand, within Echvi_1850 at 2166.892 kb on - strand, within Echvi_1850 at 2166.960 kb on + strand, within Echvi_1850 at 2167.007 kb on + strand, within Echvi_1850 at 2167.008 kb on - strand, within Echvi_1850 at 2167.008 kb on - strand, within Echvi_1850 at 2167.010 kb on - strand, within Echvi_1850 at 2167.026 kb on - strand, within Echvi_1850 at 2167.026 kb on - strand, within Echvi_1850 at 2167.026 kb on - strand, within Echvi_1850 at 2167.026 kb on - strand, within Echvi_1850
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml remove 2,164,133 + Echvi_1847 0.79 -1.8 2,164,133 + Echvi_1847 0.79 +1.3 2,164,133 + Echvi_1847 0.79 -1.3 2,164,133 + Echvi_1847 0.79 -0.9 2,164,133 + +2.1 2,164,133 + Echvi_1847 0.79 -1.6 2,164,134 - Echvi_1847 0.79 -0.5 2,164,134 - Echvi_1847 0.79 -0.9 2,164,134 - Echvi_1847 0.79 -1.4 2,164,134 - Echvi_1847 0.79 -0.8 2,164,134 - Echvi_1847 0.79 -0.9 2,164,134 - Echvi_1847 0.79 +0.9 2,164,134 - Echvi_1847 0.79 +0.7 2,164,184 - Echvi_1847 0.82 -1.8 2,164,243 + Echvi_1847 0.85 -1.1 2,164,243 + Echvi_1847 0.85 -1.0 2,164,244 - Echvi_1847 0.85 -1.0 2,164,244 - Echvi_1847 0.85 -1.4 2,164,248 - Echvi_1847 0.86 -1.2 2,164,261 + Echvi_1847 0.86 -0.5 2,164,261 + Echvi_1847 0.86 -0.7 2,164,262 - Echvi_1847 0.86 +0.2 2,164,262 - Echvi_1847 0.86 -0.3 2,164,347 + -0.5 2,164,347 + +0.5 2,164,348 - -2.1 2,164,348 - -0.9 2,164,348 - -1.4 2,164,425 - -0.3 2,164,425 - +0.0 2,164,426 + -0.2 2,164,427 - -0.5 2,164,503 + -0.7 2,164,503 + -0.8 2,164,504 - +0.1 2,164,504 - -0.1 2,164,569 + Echvi_1848 0.11 -0.9 2,164,569 + Echvi_1848 0.11 +0.5 2,164,569 + Echvi_1848 0.11 -0.5 2,164,597 + Echvi_1848 0.16 -0.5 2,164,597 + Echvi_1848 0.16 +0.2 2,164,597 + Echvi_1848 0.16 -0.9 2,164,676 - Echvi_1848 0.30 -0.0 2,164,676 - Echvi_1848 0.30 -0.2 2,164,676 - Echvi_1848 0.30 +0.9 2,164,676 - Echvi_1848 0.30 -0.8 2,164,681 + Echvi_1848 0.31 -0.3 2,164,682 - Echvi_1848 0.32 -0.3 2,164,684 + Echvi_1848 0.32 -1.1 2,164,684 + Echvi_1848 0.32 -0.5 2,164,684 + Echvi_1848 0.32 -0.1 2,164,726 + Echvi_1848 0.39 -0.9 2,164,726 + Echvi_1848 0.39 -0.0 2,164,726 + Echvi_1848 0.39 +0.1 2,164,727 - Echvi_1848 0.40 +0.2 2,164,727 - Echvi_1848 0.40 -0.9 2,164,731 + Echvi_1848 0.40 -1.5 2,164,732 - Echvi_1848 0.41 -0.4 2,164,747 + Echvi_1848 0.43 -2.3 2,164,751 + Echvi_1848 0.44 -0.6 2,164,752 - Echvi_1848 0.44 -0.2 2,164,778 - Echvi_1848 0.49 -1.0 2,164,778 - Echvi_1848 0.49 +0.5 2,164,810 + Echvi_1848 0.55 -1.9 2,164,866 - Echvi_1848 0.65 -2.2 2,164,873 + Echvi_1848 0.66 -0.9 2,164,874 - Echvi_1848 0.66 -0.7 2,164,909 + Echvi_1848 0.73 -1.7 2,164,910 - Echvi_1848 0.73 -0.9 2,164,910 - Echvi_1848 0.73 -1.3 2,164,910 - Echvi_1848 0.73 -0.3 2,164,910 - Echvi_1848 0.73 -0.3 2,164,910 - Echvi_1848 0.73 -0.7 2,164,914 - Echvi_1848 0.74 +0.5 2,164,914 - Echvi_1848 0.74 -1.1 2,164,954 + Echvi_1848 0.81 +0.3 2,164,954 + Echvi_1848 0.81 -1.8 2,164,955 - Echvi_1848 0.81 +0.1 2,165,020 + -2.4 2,165,021 - -0.6 2,165,022 + +0.7 2,165,023 - -1.5 2,165,023 - -1.4 2,165,023 - +0.1 2,165,023 - -0.9 2,165,023 - -1.0 2,165,028 - -1.7 2,165,028 - -0.3 2,165,101 + +0.2 2,165,109 + +0.5 2,165,109 + +0.0 2,165,124 - +0.2 2,165,126 + +0.5 2,165,168 + -0.6 2,165,288 - Echvi_1849 0.18 -0.8 2,165,312 + Echvi_1849 0.20 +0.4 2,165,313 - Echvi_1849 0.20 -1.8 2,165,313 - Echvi_1849 0.20 -0.4 2,165,313 - Echvi_1849 0.20 +0.5 2,165,313 - Echvi_1849 0.20 -0.5 2,165,362 - Echvi_1849 0.26 +0.3 2,165,362 - Echvi_1849 0.26 +0.2 2,165,391 - Echvi_1849 0.29 +2.1 2,165,391 - Echvi_1849 0.29 +1.5 2,165,525 + +0.5 2,165,532 + Echvi_1849 0.45 -0.3 2,165,547 + Echvi_1849 0.46 -1.7 2,165,547 + Echvi_1849 0.46 +0.5 2,165,551 + Echvi_1849 0.47 +1.7 2,165,600 + Echvi_1849 0.52 -1.2 2,165,603 + Echvi_1849 0.52 +1.7 2,165,604 - Echvi_1849 0.52 -1.1 2,165,604 - Echvi_1849 0.52 -1.1 2,165,604 - Echvi_1849 0.52 -1.3 2,165,608 + Echvi_1849 0.53 -0.1 2,165,608 + Echvi_1849 0.53 -0.8 2,165,663 + Echvi_1849 0.59 +1.8 2,165,664 - Echvi_1849 0.59 -0.9 2,165,664 - Echvi_1849 0.59 -1.3 2,165,664 - Echvi_1849 0.59 -0.9 2,165,748 - Echvi_1849 0.68 -0.9 2,165,751 + Echvi_1849 0.69 +0.0 2,165,788 - Echvi_1849 0.73 -0.3 2,165,864 + Echvi_1849 0.81 -0.0 2,165,864 + Echvi_1849 0.81 -0.1 2,165,864 + Echvi_1849 0.81 +0.5 2,165,865 - Echvi_1849 0.81 -0.5 2,165,865 - Echvi_1849 0.81 +0.0 2,165,895 - Echvi_1849 0.84 +1.1 2,165,895 - Echvi_1849 0.84 +0.5 2,165,901 + Echvi_1849 0.85 +1.6 2,165,901 + Echvi_1849 0.85 -2.0 2,165,915 - Echvi_1849 0.87 +0.2 2,165,948 + -0.8 2,165,948 + -0.7 2,165,949 - -0.3 2,165,949 - -0.7 2,166,013 - -1.3 2,166,013 - -1.0 2,166,025 + -0.7 2,166,026 - -0.3 2,166,031 + +0.1 2,166,031 + -0.6 2,166,043 + +0.4 2,166,044 - -1.5 2,166,044 - -1.2 2,166,099 - -0.7 2,166,099 - -1.5 2,166,103 - +1.2 2,166,103 - -0.3 2,166,106 + +2.3 2,166,115 + -0.6 2,166,115 + -2.8 2,166,116 - -0.3 2,166,174 - -0.0 2,166,186 + +0.1 2,166,236 - -1.4 2,166,236 - +0.3 2,166,244 + +0.6 2,166,245 - +1.7 2,166,260 + -0.0 2,166,286 - +0.0 2,166,288 + -2.5 2,166,294 + -0.3 2,166,332 + -0.9 2,166,332 + -0.5 2,166,332 + -1.6 2,166,333 - -1.3 2,166,333 - -1.0 2,166,333 - +0.7 2,166,334 + +0.0 2,166,335 - +0.5 2,166,381 + -0.6 2,166,448 - -0.3 2,166,507 + +0.0 2,166,507 + +1.3 2,166,508 - +0.3 2,166,538 + +0.1 2,166,539 - +0.9 2,166,594 + +0.5 2,166,594 + +0.8 2,166,673 - Echvi_1850 0.19 +2.5 2,166,706 + Echvi_1850 0.24 +1.1 2,166,747 + Echvi_1850 0.29 +0.7 2,166,747 + Echvi_1850 0.29 +2.1 2,166,748 - Echvi_1850 0.29 +0.6 2,166,748 - Echvi_1850 0.29 -0.7 2,166,762 + Echvi_1850 0.31 +0.6 2,166,786 - Echvi_1850 0.35 -1.9 2,166,876 - Echvi_1850 0.47 -0.5 2,166,892 - Echvi_1850 0.49 +2.1 2,166,960 + Echvi_1850 0.59 +1.7 2,167,007 + Echvi_1850 0.65 +2.2 2,167,008 - Echvi_1850 0.65 +1.3 2,167,008 - Echvi_1850 0.65 +1.3 2,167,010 - Echvi_1850 0.65 +1.9 2,167,026 - Echvi_1850 0.68 +1.3 2,167,026 - Echvi_1850 0.68 +1.0 2,167,026 - Echvi_1850 0.68 -0.7 2,167,026 - Echvi_1850 0.68 +1.8
Or see this region's nucleotide sequence