Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1083

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1081 and Echvi_1082 overlap by 28 nucleotidesEchvi_1082 and Echvi_1083 are separated by 24 nucleotidesEchvi_1083 and Echvi_1084 are separated by 102 nucleotidesEchvi_1084 and Echvi_1085 are separated by 157 nucleotides Echvi_1081: Echvi_1081 - hypothetical protein, at 1,242,859 to 1,243,407 _1081 Echvi_1082: Echvi_1082 - Acetyltransferases, at 1,243,380 to 1,244,195 _1082 Echvi_1083: Echvi_1083 - N-acyl-D-aspartate/D-glutamate deacylase, at 1,244,220 to 1,245,902 _1083 Echvi_1084: Echvi_1084 - hypothetical protein, at 1,246,005 to 1,246,676 _1084 Echvi_1085: Echvi_1085 - hypothetical protein, at 1,246,834 to 1,247,199 _1085 Position (kb) 1244 1245 1246Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1243.223 kb on + strand, within Echvi_1081at 1243.321 kb on + strand, within Echvi_1081at 1243.321 kb on + strand, within Echvi_1081at 1243.343 kb on - strand, within Echvi_1081at 1243.343 kb on - strand, within Echvi_1081at 1243.343 kb on - strand, within Echvi_1081at 1243.363 kb on + strandat 1243.399 kb on + strandat 1243.572 kb on + strand, within Echvi_1082at 1243.585 kb on + strand, within Echvi_1082at 1243.585 kb on + strand, within Echvi_1082at 1243.585 kb on + strand, within Echvi_1082at 1243.585 kb on + strand, within Echvi_1082at 1243.585 kb on + strand, within Echvi_1082at 1243.586 kb on - strand, within Echvi_1082at 1243.586 kb on - strand, within Echvi_1082at 1243.661 kb on + strand, within Echvi_1082at 1243.662 kb on - strand, within Echvi_1082at 1243.662 kb on - strand, within Echvi_1082at 1243.684 kb on + strand, within Echvi_1082at 1243.684 kb on + strand, within Echvi_1082at 1243.685 kb on - strand, within Echvi_1082at 1243.685 kb on - strand, within Echvi_1082at 1243.700 kb on + strand, within Echvi_1082at 1243.729 kb on + strand, within Echvi_1082at 1243.729 kb on + strand, within Echvi_1082at 1243.774 kb on - strand, within Echvi_1082at 1243.802 kb on + strand, within Echvi_1082at 1243.802 kb on + strand, within Echvi_1082at 1243.802 kb on + strand, within Echvi_1082at 1243.803 kb on - strand, within Echvi_1082at 1243.804 kb on + strand, within Echvi_1082at 1243.804 kb on + strand, within Echvi_1082at 1243.804 kb on + strand, within Echvi_1082at 1243.804 kb on + strand, within Echvi_1082at 1243.805 kb on - strand, within Echvi_1082at 1243.805 kb on - strand, within Echvi_1082at 1243.935 kb on - strand, within Echvi_1082at 1243.936 kb on + strand, within Echvi_1082at 1243.936 kb on + strand, within Echvi_1082at 1243.936 kb on + strand, within Echvi_1082at 1243.936 kb on + strand, within Echvi_1082at 1244.020 kb on - strand, within Echvi_1082at 1244.025 kb on + strand, within Echvi_1082at 1244.025 kb on + strand, within Echvi_1082at 1244.026 kb on - strand, within Echvi_1082at 1244.059 kb on - strand, within Echvi_1082at 1244.166 kb on + strandat 1244.166 kb on + strandat 1244.181 kb on - strandat 1244.186 kb on + strandat 1244.186 kb on + strandat 1244.187 kb on - strandat 1244.285 kb on + strandat 1244.313 kb on + strandat 1244.314 kb on - strandat 1244.319 kb on + strandat 1244.319 kb on + strandat 1244.319 kb on + strandat 1244.320 kb on - strandat 1244.325 kb on + strandat 1244.325 kb on + strandat 1244.325 kb on + strandat 1244.325 kb on + strandat 1244.326 kb on - strandat 1244.414 kb on - strand, within Echvi_1083at 1244.414 kb on - strand, within Echvi_1083at 1244.425 kb on - strand, within Echvi_1083at 1244.479 kb on + strand, within Echvi_1083at 1244.521 kb on + strand, within Echvi_1083at 1244.521 kb on + strand, within Echvi_1083at 1244.521 kb on + strand, within Echvi_1083at 1244.546 kb on + strand, within Echvi_1083at 1244.551 kb on + strand, within Echvi_1083at 1244.552 kb on - strand, within Echvi_1083at 1244.677 kb on + strand, within Echvi_1083at 1244.706 kb on + strand, within Echvi_1083at 1244.707 kb on - strand, within Echvi_1083at 1244.707 kb on - strand, within Echvi_1083at 1244.805 kb on - strand, within Echvi_1083at 1245.000 kb on - strand, within Echvi_1083at 1245.000 kb on - strand, within Echvi_1083at 1245.001 kb on + strand, within Echvi_1083at 1245.001 kb on + strand, within Echvi_1083at 1245.002 kb on - strand, within Echvi_1083at 1245.002 kb on - strand, within Echvi_1083at 1245.002 kb on - strand, within Echvi_1083at 1245.007 kb on + strand, within Echvi_1083at 1245.007 kb on + strand, within Echvi_1083at 1245.007 kb on + strand, within Echvi_1083at 1245.007 kb on + strand, within Echvi_1083at 1245.007 kb on + strand, within Echvi_1083at 1245.007 kb on + strand, within Echvi_1083at 1245.007 kb on + strand, within Echvi_1083at 1245.008 kb on - strand, within Echvi_1083at 1245.008 kb on - strand, within Echvi_1083at 1245.008 kb on - strand, within Echvi_1083at 1245.008 kb on - strand, within Echvi_1083at 1245.008 kb on - strand, within Echvi_1083at 1245.008 kb on - strand, within Echvi_1083at 1245.008 kb on - strand, within Echvi_1083at 1245.008 kb on - strand, within Echvi_1083at 1245.008 kb on - strand, within Echvi_1083at 1245.008 kb on - strand, within Echvi_1083at 1245.011 kb on + strand, within Echvi_1083at 1245.012 kb on - strand, within Echvi_1083at 1245.012 kb on - strand, within Echvi_1083at 1245.209 kb on - strand, within Echvi_1083at 1245.220 kb on + strand, within Echvi_1083at 1245.268 kb on + strand, within Echvi_1083at 1245.268 kb on + strand, within Echvi_1083at 1245.283 kb on + strand, within Echvi_1083at 1245.283 kb on + strand, within Echvi_1083at 1245.283 kb on + strand, within Echvi_1083at 1245.283 kb on + strand, within Echvi_1083at 1245.284 kb on - strand, within Echvi_1083at 1245.472 kb on + strand, within Echvi_1083at 1245.502 kb on + strand, within Echvi_1083at 1245.502 kb on + strand, within Echvi_1083at 1245.502 kb on + strand, within Echvi_1083at 1245.503 kb on - strand, within Echvi_1083at 1245.503 kb on - strand, within Echvi_1083at 1245.681 kb on + strand, within Echvi_1083at 1245.702 kb on + strand, within Echvi_1083at 1245.702 kb on + strand, within Echvi_1083at 1245.703 kb on - strand, within Echvi_1083at 1245.703 kb on - strand, within Echvi_1083at 1245.738 kb on + strandat 1245.781 kb on + strandat 1245.781 kb on + strandat 1245.782 kb on - strandat 1245.782 kb on - strandat 1245.782 kb on - strandat 1245.782 kb on - strandat 1245.782 kb on - strandat 1245.782 kb on - strandat 1245.867 kb on + strandat 1245.876 kb on + strandat 1245.877 kb on - strandat 1245.877 kb on - strandat 1245.877 kb on - strandat 1245.907 kb on + strandat 1245.907 kb on + strandat 1245.907 kb on + strandat 1245.908 kb on - strandat 1245.908 kb on - strandat 1245.924 kb on + strandat 1245.925 kb on - strandat 1245.929 kb on + strandat 1245.929 kb on + strandat 1245.929 kb on + strandat 1245.930 kb on - strandat 1245.930 kb on - strandat 1245.931 kb on + strandat 1246.006 kb on + strandat 1246.006 kb on + strandat 1246.006 kb on + strandat 1246.007 kb on - strandat 1246.043 kb on + strandat 1246.047 kb on + strandat 1246.048 kb on - strandat 1246.060 kb on + strandat 1246.060 kb on + strandat 1246.061 kb on - strandat 1246.064 kb on + strandat 1246.075 kb on + strand, within Echvi_1084at 1246.075 kb on + strand, within Echvi_1084at 1246.083 kb on + strand, within Echvi_1084at 1246.084 kb on - strand, within Echvi_1084at 1246.090 kb on + strand, within Echvi_1084at 1246.107 kb on - strand, within Echvi_1084at 1246.113 kb on - strand, within Echvi_1084at 1246.141 kb on + strand, within Echvi_1084at 1246.142 kb on - strand, within Echvi_1084at 1246.142 kb on - strand, within Echvi_1084at 1246.147 kb on + strand, within Echvi_1084at 1246.148 kb on - strand, within Echvi_1084at 1246.148 kb on - strand, within Echvi_1084at 1246.157 kb on + strand, within Echvi_1084at 1246.157 kb on + strand, within Echvi_1084at 1246.157 kb on + strand, within Echvi_1084at 1246.157 kb on + strand, within Echvi_1084at 1246.161 kb on + strand, within Echvi_1084at 1246.161 kb on + strand, within Echvi_1084at 1246.161 kb on + strand, within Echvi_1084at 1246.161 kb on + strand, within Echvi_1084at 1246.162 kb on - strand, within Echvi_1084at 1246.162 kb on - strand, within Echvi_1084at 1246.162 kb on - strand, within Echvi_1084at 1246.174 kb on + strand, within Echvi_1084at 1246.211 kb on + strand, within Echvi_1084at 1246.211 kb on + strand, within Echvi_1084at 1246.211 kb on + strand, within Echvi_1084at 1246.211 kb on + strand, within Echvi_1084at 1246.212 kb on - strand, within Echvi_1084at 1246.273 kb on - strand, within Echvi_1084at 1246.298 kb on - strand, within Echvi_1084at 1246.315 kb on - strand, within Echvi_1084at 1246.343 kb on - strand, within Echvi_1084at 1246.355 kb on - strand, within Echvi_1084at 1246.387 kb on - strand, within Echvi_1084at 1246.462 kb on + strand, within Echvi_1084at 1246.463 kb on - strand, within Echvi_1084at 1246.463 kb on - strand, within Echvi_1084at 1246.552 kb on + strand, within Echvi_1084at 1246.553 kb on - strand, within Echvi_1084at 1246.553 kb on - strand, within Echvi_1084at 1246.572 kb on - strand, within Echvi_1084at 1246.572 kb on - strand, within Echvi_1084at 1246.572 kb on - strand, within Echvi_1084at 1246.653 kb on - strandat 1246.706 kb on + strandat 1246.706 kb on + strandat 1246.707 kb on - strandat 1246.707 kb on - strandat 1246.707 kb on - strandat 1246.707 kb on - strandat 1246.726 kb on - strandat 1246.815 kb on - strandat 1246.815 kb on - strandat 1246.815 kb on - strandat 1246.815 kb on - strandat 1246.835 kb on + strandat 1246.836 kb on - strandat 1246.867 kb on + strandat 1246.867 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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1,243,223 + Echvi_1081 0.66 -0.2
1,243,321 + Echvi_1081 0.84 -0.1
1,243,321 + Echvi_1081 0.84 -1.0
1,243,343 - Echvi_1081 0.88 +2.8
1,243,343 - Echvi_1081 0.88 +0.0
1,243,343 - Echvi_1081 0.88 +0.0
1,243,363 + +0.5
1,243,399 + +0.5
1,243,572 + Echvi_1082 0.24 -0.4
1,243,585 + Echvi_1082 0.25 -0.2
1,243,585 + Echvi_1082 0.25 -0.3
1,243,585 + Echvi_1082 0.25 +0.2
1,243,585 + Echvi_1082 0.25 -1.1
1,243,585 + Echvi_1082 0.25 +0.1
1,243,586 - Echvi_1082 0.25 -0.1
1,243,586 - Echvi_1082 0.25 -1.1
1,243,661 + Echvi_1082 0.34 +0.4
1,243,662 - Echvi_1082 0.35 -1.6
1,243,662 - Echvi_1082 0.35 +0.5
1,243,684 + Echvi_1082 0.37 +1.1
1,243,684 + Echvi_1082 0.37 +0.4
1,243,685 - Echvi_1082 0.37 +1.2
1,243,685 - Echvi_1082 0.37 -1.9
1,243,700 + Echvi_1082 0.39 -1.0
1,243,729 + Echvi_1082 0.43 +0.4
1,243,729 + Echvi_1082 0.43 +0.3
1,243,774 - Echvi_1082 0.48 -1.1
1,243,802 + Echvi_1082 0.52 +0.3
1,243,802 + Echvi_1082 0.52 +0.8
1,243,802 + Echvi_1082 0.52 +0.1
1,243,803 - Echvi_1082 0.52 +0.7
1,243,804 + Echvi_1082 0.52 +0.3
1,243,804 + Echvi_1082 0.52 -0.3
1,243,804 + Echvi_1082 0.52 -1.1
1,243,804 + Echvi_1082 0.52 +0.4
1,243,805 - Echvi_1082 0.52 +0.1
1,243,805 - Echvi_1082 0.52 +0.5
1,243,935 - Echvi_1082 0.68 +0.9
1,243,936 + Echvi_1082 0.68 +0.8
1,243,936 + Echvi_1082 0.68 -0.6
1,243,936 + Echvi_1082 0.68 +0.3
1,243,936 + Echvi_1082 0.68 +2.2
1,244,020 - Echvi_1082 0.78 +0.1
1,244,025 + Echvi_1082 0.79 -0.9
1,244,025 + Echvi_1082 0.79 -0.1
1,244,026 - Echvi_1082 0.79 +0.8
1,244,059 - Echvi_1082 0.83 +1.1
1,244,166 + -0.2
1,244,166 + -2.3
1,244,181 - -1.3
1,244,186 + -0.5
1,244,186 + -1.4
1,244,187 - +0.0
1,244,285 + +0.6
1,244,313 + -0.6
1,244,314 - -1.6
1,244,319 + -0.8
1,244,319 + +0.7
1,244,319 + -0.3
1,244,320 - -0.3
1,244,325 + +0.9
1,244,325 + +0.1
1,244,325 + -0.4
1,244,325 + +1.4
1,244,326 - -0.7
1,244,414 - Echvi_1083 0.12 +0.2
1,244,414 - Echvi_1083 0.12 -2.9
1,244,425 - Echvi_1083 0.12 -0.9
1,244,479 + Echvi_1083 0.15 -1.1
1,244,521 + Echvi_1083 0.18 +0.1
1,244,521 + Echvi_1083 0.18 +1.7
1,244,521 + Echvi_1083 0.18 +0.2
1,244,546 + Echvi_1083 0.19 +0.9
1,244,551 + Echvi_1083 0.20 +0.6
1,244,552 - Echvi_1083 0.20 +0.2
1,244,677 + Echvi_1083 0.27 -2.3
1,244,706 + Echvi_1083 0.29 +2.8
1,244,707 - Echvi_1083 0.29 +0.4
1,244,707 - Echvi_1083 0.29 +0.7
1,244,805 - Echvi_1083 0.35 +0.5
1,245,000 - Echvi_1083 0.46 +0.1
1,245,000 - Echvi_1083 0.46 +0.7
1,245,001 + Echvi_1083 0.46 -1.1
1,245,001 + Echvi_1083 0.46 +0.4
1,245,002 - Echvi_1083 0.46 +1.9
1,245,002 - Echvi_1083 0.46 +3.2
1,245,002 - Echvi_1083 0.46 +0.7
1,245,007 + Echvi_1083 0.47 +0.2
1,245,007 + Echvi_1083 0.47 -0.1
1,245,007 + Echvi_1083 0.47 -0.8
1,245,007 + Echvi_1083 0.47 +2.6
1,245,007 + Echvi_1083 0.47 +0.0
1,245,007 + Echvi_1083 0.47 +0.1
1,245,007 + Echvi_1083 0.47 +1.1
1,245,008 - Echvi_1083 0.47 +1.4
1,245,008 - Echvi_1083 0.47 +0.5
1,245,008 - Echvi_1083 0.47 -0.3
1,245,008 - Echvi_1083 0.47 -1.0
1,245,008 - Echvi_1083 0.47 +0.2
1,245,008 - Echvi_1083 0.47 -0.2
1,245,008 - Echvi_1083 0.47 +0.2
1,245,008 - Echvi_1083 0.47 +0.2
1,245,008 - Echvi_1083 0.47 +1.4
1,245,008 - Echvi_1083 0.47 -0.2
1,245,011 + Echvi_1083 0.47 -0.5
1,245,012 - Echvi_1083 0.47 -0.0
1,245,012 - Echvi_1083 0.47 -0.6
1,245,209 - Echvi_1083 0.59 +1.0
1,245,220 + Echvi_1083 0.59 +0.1
1,245,268 + Echvi_1083 0.62 -0.8
1,245,268 + Echvi_1083 0.62 -0.4
1,245,283 + Echvi_1083 0.63 +1.2
1,245,283 + Echvi_1083 0.63 +0.1
1,245,283 + Echvi_1083 0.63 -0.0
1,245,283 + Echvi_1083 0.63 +0.4
1,245,284 - Echvi_1083 0.63 +1.5
1,245,472 + Echvi_1083 0.74 +0.3
1,245,502 + Echvi_1083 0.76 +1.2
1,245,502 + Echvi_1083 0.76 +0.6
1,245,502 + Echvi_1083 0.76 -2.7
1,245,503 - Echvi_1083 0.76 +0.2
1,245,503 - Echvi_1083 0.76 +1.9
1,245,681 + Echvi_1083 0.87 -0.7
1,245,702 + Echvi_1083 0.88 -0.2
1,245,702 + Echvi_1083 0.88 -1.1
1,245,703 - Echvi_1083 0.88 +0.6
1,245,703 - Echvi_1083 0.88 +0.7
1,245,738 + +0.3
1,245,781 + +0.4
1,245,781 + +1.2
1,245,782 - -1.0
1,245,782 - +0.5
1,245,782 - +0.1
1,245,782 - +0.6
1,245,782 - -1.1
1,245,782 - +0.5
1,245,867 + +1.4
1,245,876 + +0.6
1,245,877 - +0.9
1,245,877 - +2.5
1,245,877 - +0.2
1,245,907 + -0.8
1,245,907 + +1.1
1,245,907 + -0.6
1,245,908 - -0.6
1,245,908 - +0.2
1,245,924 + +0.9
1,245,925 - -0.5
1,245,929 + +1.2
1,245,929 + +0.3
1,245,929 + +1.7
1,245,930 - +2.2
1,245,930 - -0.7
1,245,931 + +0.0
1,246,006 + +0.2
1,246,006 + -0.0
1,246,006 + +0.9
1,246,007 - -0.2
1,246,043 + +0.1
1,246,047 + -0.3
1,246,048 - -0.6
1,246,060 + -1.7
1,246,060 + +1.5
1,246,061 - -0.1
1,246,064 + -1.5
1,246,075 + Echvi_1084 0.10 -0.7
1,246,075 + Echvi_1084 0.10 -0.5
1,246,083 + Echvi_1084 0.12 +1.0
1,246,084 - Echvi_1084 0.12 -0.7
1,246,090 + Echvi_1084 0.13 +0.0
1,246,107 - Echvi_1084 0.15 +0.8
1,246,113 - Echvi_1084 0.16 +0.8
1,246,141 + Echvi_1084 0.20 +1.3
1,246,142 - Echvi_1084 0.20 -1.5
1,246,142 - Echvi_1084 0.20 -0.7
1,246,147 + Echvi_1084 0.21 -0.1
1,246,148 - Echvi_1084 0.21 -1.3
1,246,148 - Echvi_1084 0.21 -0.3
1,246,157 + Echvi_1084 0.23 +0.6
1,246,157 + Echvi_1084 0.23 +1.2
1,246,157 + Echvi_1084 0.23 +0.4
1,246,157 + Echvi_1084 0.23 +0.6
1,246,161 + Echvi_1084 0.23 +0.9
1,246,161 + Echvi_1084 0.23 -0.3
1,246,161 + Echvi_1084 0.23 +0.3
1,246,161 + Echvi_1084 0.23 -0.0
1,246,162 - Echvi_1084 0.23 -1.8
1,246,162 - Echvi_1084 0.23 -0.4
1,246,162 - Echvi_1084 0.23 +0.8
1,246,174 + Echvi_1084 0.25 -2.7
1,246,211 + Echvi_1084 0.31 +0.7
1,246,211 + Echvi_1084 0.31 +0.2
1,246,211 + Echvi_1084 0.31 +0.4
1,246,211 + Echvi_1084 0.31 -0.9
1,246,212 - Echvi_1084 0.31 -0.5
1,246,273 - Echvi_1084 0.40 +0.3
1,246,298 - Echvi_1084 0.44 -0.2
1,246,315 - Echvi_1084 0.46 -1.5
1,246,343 - Echvi_1084 0.50 -0.8
1,246,355 - Echvi_1084 0.52 +1.2
1,246,387 - Echvi_1084 0.57 +0.5
1,246,462 + Echvi_1084 0.68 +0.1
1,246,463 - Echvi_1084 0.68 -0.5
1,246,463 - Echvi_1084 0.68 -1.5
1,246,552 + Echvi_1084 0.81 -0.7
1,246,553 - Echvi_1084 0.82 -0.1
1,246,553 - Echvi_1084 0.82 -0.3
1,246,572 - Echvi_1084 0.84 -0.6
1,246,572 - Echvi_1084 0.84 -1.6
1,246,572 - Echvi_1084 0.84 -0.2
1,246,653 - +0.1
1,246,706 + +0.7
1,246,706 + +0.4
1,246,707 - +0.8
1,246,707 - +0.4
1,246,707 - -0.1
1,246,707 - -0.1
1,246,726 - -0.3
1,246,815 - -0.3
1,246,815 - +0.7
1,246,815 - -0.7
1,246,815 - -0.1
1,246,835 + +0.4
1,246,836 - +0.2
1,246,867 + -1.3
1,246,867 + -0.7

Or see this region's nucleotide sequence