Experiment: m.b. Carbenicillin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0777 and Echvi_0778 are separated by 88 nucleotides Echvi_0778 and Echvi_0779 are separated by 185 nucleotides Echvi_0779 and Echvi_0780 overlap by 8 nucleotides
Echvi_0777: Echvi_0777 - N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA, at 875,142 to 876,281
_0777
Echvi_0778: Echvi_0778 - Beta-glucosidase-related glycosidases, at 876,370 to 879,342
_0778
Echvi_0779: Echvi_0779 - hypothetical protein, at 879,528 to 879,944
_0779
Echvi_0780: Echvi_0780 - DNA mismatch repair protein MutL, at 879,937 to 881,808
_0780
Position (kb) 876
877
878
879
880 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 875.415 kb on + strand, within Echvi_0777 at 876.117 kb on + strand, within Echvi_0777 at 876.170 kb on + strand at 876.171 kb on - strand at 876.173 kb on - strand at 876.176 kb on + strand at 876.235 kb on - strand at 876.255 kb on - strand at 876.325 kb on + strand at 876.325 kb on + strand at 876.325 kb on + strand at 876.325 kb on + strand at 876.325 kb on + strand at 876.325 kb on + strand at 876.326 kb on - strand at 876.326 kb on - strand at 876.327 kb on + strand at 876.376 kb on - strand at 876.391 kb on + strand at 876.391 kb on + strand at 876.391 kb on + strand at 876.391 kb on + strand at 876.392 kb on - strand at 876.392 kb on - strand at 876.421 kb on - strand at 876.508 kb on + strand at 876.532 kb on - strand at 876.543 kb on + strand at 876.679 kb on + strand, within Echvi_0778 at 876.680 kb on - strand, within Echvi_0778 at 876.690 kb on - strand, within Echvi_0778 at 876.703 kb on + strand, within Echvi_0778 at 876.703 kb on + strand, within Echvi_0778 at 876.776 kb on + strand, within Echvi_0778 at 876.776 kb on + strand, within Echvi_0778 at 876.776 kb on + strand, within Echvi_0778 at 876.777 kb on - strand, within Echvi_0778 at 876.869 kb on + strand, within Echvi_0778 at 876.869 kb on + strand, within Echvi_0778 at 876.870 kb on - strand, within Echvi_0778 at 876.870 kb on - strand, within Echvi_0778 at 876.870 kb on - strand, within Echvi_0778 at 876.899 kb on + strand, within Echvi_0778 at 876.900 kb on - strand, within Echvi_0778 at 876.900 kb on - strand, within Echvi_0778 at 876.955 kb on + strand, within Echvi_0778 at 876.959 kb on - strand, within Echvi_0778 at 876.986 kb on + strand, within Echvi_0778 at 876.986 kb on + strand, within Echvi_0778 at 876.986 kb on + strand, within Echvi_0778 at 876.986 kb on + strand, within Echvi_0778 at 876.986 kb on + strand, within Echvi_0778 at 876.987 kb on - strand, within Echvi_0778 at 876.987 kb on - strand, within Echvi_0778 at 876.987 kb on - strand, within Echvi_0778 at 876.987 kb on - strand, within Echvi_0778 at 876.987 kb on - strand, within Echvi_0778 at 876.987 kb on - strand, within Echvi_0778 at 877.005 kb on - strand, within Echvi_0778 at 877.008 kb on + strand, within Echvi_0778 at 877.009 kb on - strand, within Echvi_0778 at 877.009 kb on - strand, within Echvi_0778 at 877.011 kb on - strand, within Echvi_0778 at 877.011 kb on - strand, within Echvi_0778 at 877.097 kb on + strand, within Echvi_0778 at 877.098 kb on - strand, within Echvi_0778 at 877.098 kb on - strand, within Echvi_0778 at 877.098 kb on - strand, within Echvi_0778 at 877.185 kb on + strand, within Echvi_0778 at 877.186 kb on - strand, within Echvi_0778 at 877.186 kb on - strand, within Echvi_0778 at 877.186 kb on - strand, within Echvi_0778 at 877.188 kb on + strand, within Echvi_0778 at 877.188 kb on + strand, within Echvi_0778 at 877.188 kb on + strand, within Echvi_0778 at 877.188 kb on + strand, within Echvi_0778 at 877.188 kb on + strand, within Echvi_0778 at 877.189 kb on - strand, within Echvi_0778 at 877.189 kb on - strand, within Echvi_0778 at 877.189 kb on - strand, within Echvi_0778 at 877.189 kb on - strand, within Echvi_0778 at 877.189 kb on - strand, within Echvi_0778 at 877.189 kb on - strand, within Echvi_0778 at 877.191 kb on - strand, within Echvi_0778 at 877.246 kb on - strand, within Echvi_0778 at 877.257 kb on + strand, within Echvi_0778 at 877.283 kb on + strand, within Echvi_0778 at 877.288 kb on - strand, within Echvi_0778 at 877.288 kb on - strand, within Echvi_0778 at 877.383 kb on - strand, within Echvi_0778 at 877.455 kb on + strand, within Echvi_0778 at 877.464 kb on + strand, within Echvi_0778 at 877.464 kb on + strand, within Echvi_0778 at 877.464 kb on + strand, within Echvi_0778 at 877.465 kb on - strand, within Echvi_0778 at 877.465 kb on - strand at 877.468 kb on + strand, within Echvi_0778 at 877.468 kb on + strand, within Echvi_0778 at 877.469 kb on - strand, within Echvi_0778 at 877.469 kb on - strand, within Echvi_0778 at 877.475 kb on - strand, within Echvi_0778 at 877.533 kb on + strand, within Echvi_0778 at 877.533 kb on + strand, within Echvi_0778 at 877.571 kb on + strand, within Echvi_0778 at 877.575 kb on + strand, within Echvi_0778 at 877.575 kb on + strand, within Echvi_0778 at 877.575 kb on + strand, within Echvi_0778 at 877.575 kb on + strand, within Echvi_0778 at 877.575 kb on + strand, within Echvi_0778 at 877.576 kb on - strand, within Echvi_0778 at 877.576 kb on - strand, within Echvi_0778 at 877.576 kb on - strand, within Echvi_0778 at 877.576 kb on - strand, within Echvi_0778 at 877.576 kb on - strand, within Echvi_0778 at 877.576 kb on - strand, within Echvi_0778 at 877.578 kb on - strand, within Echvi_0778 at 877.636 kb on + strand, within Echvi_0778 at 877.637 kb on - strand, within Echvi_0778 at 877.704 kb on + strand, within Echvi_0778 at 877.754 kb on + strand, within Echvi_0778 at 877.754 kb on + strand, within Echvi_0778 at 877.826 kb on + strand, within Echvi_0778 at 877.826 kb on + strand, within Echvi_0778 at 877.826 kb on + strand, within Echvi_0778 at 877.827 kb on - strand, within Echvi_0778 at 877.827 kb on - strand, within Echvi_0778 at 877.827 kb on - strand, within Echvi_0778 at 877.827 kb on - strand, within Echvi_0778 at 877.860 kb on + strand, within Echvi_0778 at 877.944 kb on + strand, within Echvi_0778 at 877.944 kb on + strand, within Echvi_0778 at 877.947 kb on + strand, within Echvi_0778 at 877.947 kb on + strand, within Echvi_0778 at 877.948 kb on - strand, within Echvi_0778 at 877.965 kb on + strand, within Echvi_0778 at 877.966 kb on - strand, within Echvi_0778 at 877.966 kb on - strand, within Echvi_0778 at 877.966 kb on - strand, within Echvi_0778 at 877.966 kb on - strand, within Echvi_0778 at 877.966 kb on - strand, within Echvi_0778 at 877.967 kb on + strand, within Echvi_0778 at 877.997 kb on + strand, within Echvi_0778 at 877.997 kb on + strand, within Echvi_0778 at 878.115 kb on - strand, within Echvi_0778 at 878.126 kb on - strand, within Echvi_0778 at 878.144 kb on + strand, within Echvi_0778 at 878.144 kb on + strand, within Echvi_0778 at 878.145 kb on - strand, within Echvi_0778 at 878.179 kb on + strand, within Echvi_0778 at 878.180 kb on - strand, within Echvi_0778 at 878.194 kb on - strand, within Echvi_0778 at 878.221 kb on + strand, within Echvi_0778 at 878.221 kb on + strand, within Echvi_0778 at 878.221 kb on + strand, within Echvi_0778 at 878.321 kb on + strand, within Echvi_0778 at 878.321 kb on + strand, within Echvi_0778 at 878.484 kb on + strand, within Echvi_0778 at 878.503 kb on - strand, within Echvi_0778 at 878.574 kb on + strand, within Echvi_0778 at 878.628 kb on + strand, within Echvi_0778 at 878.629 kb on - strand, within Echvi_0778 at 878.629 kb on - strand, within Echvi_0778 at 878.629 kb on - strand, within Echvi_0778 at 878.712 kb on + strand, within Echvi_0778 at 878.712 kb on + strand, within Echvi_0778 at 878.713 kb on - strand, within Echvi_0778 at 878.713 kb on - strand, within Echvi_0778 at 878.715 kb on - strand, within Echvi_0778 at 878.873 kb on + strand, within Echvi_0778 at 878.874 kb on - strand, within Echvi_0778 at 878.874 kb on - strand, within Echvi_0778 at 879.005 kb on + strand, within Echvi_0778 at 879.006 kb on - strand, within Echvi_0778 at 879.008 kb on + strand, within Echvi_0778 at 879.009 kb on - strand, within Echvi_0778 at 879.009 kb on - strand, within Echvi_0778 at 879.009 kb on - strand, within Echvi_0778 at 879.052 kb on + strand at 879.212 kb on + strand at 879.213 kb on - strand at 879.213 kb on - strand at 879.213 kb on - strand at 879.275 kb on - strand at 879.275 kb on - strand at 879.366 kb on + strand at 879.367 kb on - strand at 879.378 kb on + strand at 879.386 kb on + strand at 879.429 kb on + strand at 879.435 kb on + strand at 879.447 kb on + strand at 879.447 kb on + strand at 879.447 kb on + strand at 879.456 kb on + strand at 879.456 kb on + strand at 879.491 kb on + strand at 879.491 kb on + strand at 879.491 kb on + strand at 879.491 kb on + strand at 879.497 kb on + strand at 879.497 kb on + strand at 879.502 kb on + strand at 879.502 kb on + strand at 879.502 kb on + strand at 879.502 kb on + strand at 879.544 kb on + strand at 879.591 kb on + strand, within Echvi_0779 at 879.686 kb on + strand, within Echvi_0779 at 879.686 kb on + strand, within Echvi_0779 at 879.737 kb on + strand, within Echvi_0779 at 879.846 kb on + strand, within Echvi_0779 at 879.846 kb on + strand, within Echvi_0779 at 879.846 kb on + strand, within Echvi_0779 at 879.865 kb on + strand, within Echvi_0779 at 879.865 kb on + strand, within Echvi_0779 at 879.866 kb on - strand, within Echvi_0779 at 879.866 kb on - strand, within Echvi_0779 at 879.867 kb on + strand, within Echvi_0779 at 879.867 kb on + strand, within Echvi_0779 at 879.867 kb on + strand, within Echvi_0779 at 879.868 kb on - strand, within Echvi_0779 at 879.879 kb on + strand, within Echvi_0779 at 879.914 kb on + strand at 879.914 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml remove 875,415 + Echvi_0777 0.24 +4.5 876,117 + Echvi_0777 0.86 +4.6 876,170 + +4.2 876,171 - +2.2 876,173 - +4.3 876,176 + +3.6 876,235 - +6.2 876,255 - +3.4 876,325 + +2.2 876,325 + +1.7 876,325 + +0.3 876,325 + +1.8 876,325 + +0.4 876,325 + +2.0 876,326 - -0.2 876,326 - +1.2 876,327 + +0.3 876,376 - +0.5 876,391 + +1.8 876,391 + +2.7 876,391 + -0.7 876,391 + +0.5 876,392 - +1.7 876,392 - +1.9 876,421 - -0.2 876,508 + +2.3 876,532 - +2.4 876,543 + +1.9 876,679 + Echvi_0778 0.10 +0.0 876,680 - Echvi_0778 0.10 +1.9 876,690 - Echvi_0778 0.11 +0.9 876,703 + Echvi_0778 0.11 +1.5 876,703 + Echvi_0778 0.11 +1.9 876,776 + Echvi_0778 0.14 +1.6 876,776 + Echvi_0778 0.14 +2.0 876,776 + Echvi_0778 0.14 +1.9 876,777 - Echvi_0778 0.14 +1.9 876,869 + Echvi_0778 0.17 +1.4 876,869 + Echvi_0778 0.17 +1.6 876,870 - Echvi_0778 0.17 +1.4 876,870 - Echvi_0778 0.17 +1.3 876,870 - Echvi_0778 0.17 +2.4 876,899 + Echvi_0778 0.18 -0.2 876,900 - Echvi_0778 0.18 +1.0 876,900 - Echvi_0778 0.18 +1.7 876,955 + Echvi_0778 0.20 +1.8 876,959 - Echvi_0778 0.20 +0.9 876,986 + Echvi_0778 0.21 +3.1 876,986 + Echvi_0778 0.21 +1.5 876,986 + Echvi_0778 0.21 +1.8 876,986 + Echvi_0778 0.21 +1.3 876,986 + Echvi_0778 0.21 +0.9 876,987 - Echvi_0778 0.21 +0.7 876,987 - Echvi_0778 0.21 +1.6 876,987 - Echvi_0778 0.21 +1.8 876,987 - Echvi_0778 0.21 +0.5 876,987 - Echvi_0778 0.21 +3.4 876,987 - Echvi_0778 0.21 +1.0 877,005 - Echvi_0778 0.21 +0.4 877,008 + Echvi_0778 0.21 +5.0 877,009 - Echvi_0778 0.21 +1.1 877,009 - Echvi_0778 0.21 -0.2 877,011 - Echvi_0778 0.22 +2.7 877,011 - Echvi_0778 0.22 +1.7 877,097 + Echvi_0778 0.24 +2.5 877,098 - Echvi_0778 0.24 +1.3 877,098 - Echvi_0778 0.24 +1.5 877,098 - Echvi_0778 0.24 +0.9 877,185 + Echvi_0778 0.27 +1.4 877,186 - Echvi_0778 0.27 +2.0 877,186 - Echvi_0778 0.27 +0.8 877,186 - Echvi_0778 0.27 +1.4 877,188 + Echvi_0778 0.28 +0.6 877,188 + Echvi_0778 0.28 +1.3 877,188 + Echvi_0778 0.28 +2.0 877,188 + Echvi_0778 0.28 +1.6 877,188 + Echvi_0778 0.28 +2.8 877,189 - Echvi_0778 0.28 +0.5 877,189 - Echvi_0778 0.28 +2.9 877,189 - Echvi_0778 0.28 +1.3 877,189 - Echvi_0778 0.28 +2.3 877,189 - Echvi_0778 0.28 +1.8 877,189 - Echvi_0778 0.28 +0.6 877,191 - Echvi_0778 0.28 +1.7 877,246 - Echvi_0778 0.29 +0.8 877,257 + Echvi_0778 0.30 +3.0 877,283 + Echvi_0778 0.31 +3.9 877,288 - Echvi_0778 0.31 +0.7 877,288 - Echvi_0778 0.31 +2.6 877,383 - Echvi_0778 0.34 +1.8 877,455 + Echvi_0778 0.36 +2.2 877,464 + Echvi_0778 0.37 +2.7 877,464 + Echvi_0778 0.37 +1.7 877,464 + Echvi_0778 0.37 +0.8 877,465 - Echvi_0778 0.37 +1.9 877,465 - +4.2 877,468 + Echvi_0778 0.37 +1.9 877,468 + Echvi_0778 0.37 +2.1 877,469 - Echvi_0778 0.37 +2.3 877,469 - Echvi_0778 0.37 +2.0 877,475 - Echvi_0778 0.37 +1.6 877,533 + Echvi_0778 0.39 +1.7 877,533 + Echvi_0778 0.39 +2.3 877,571 + Echvi_0778 0.40 +1.0 877,575 + Echvi_0778 0.41 +2.2 877,575 + Echvi_0778 0.41 +2.3 877,575 + Echvi_0778 0.41 +2.7 877,575 + Echvi_0778 0.41 +2.9 877,575 + Echvi_0778 0.41 +2.5 877,576 - Echvi_0778 0.41 +2.3 877,576 - Echvi_0778 0.41 +1.9 877,576 - Echvi_0778 0.41 +1.4 877,576 - Echvi_0778 0.41 +2.4 877,576 - Echvi_0778 0.41 +1.7 877,576 - Echvi_0778 0.41 +2.1 877,578 - Echvi_0778 0.41 +1.8 877,636 + Echvi_0778 0.43 +0.6 877,637 - Echvi_0778 0.43 +2.0 877,704 + Echvi_0778 0.45 +2.5 877,754 + Echvi_0778 0.47 +2.4 877,754 + Echvi_0778 0.47 +1.6 877,826 + Echvi_0778 0.49 +2.5 877,826 + Echvi_0778 0.49 +2.8 877,826 + Echvi_0778 0.49 +2.0 877,827 - Echvi_0778 0.49 +4.2 877,827 - Echvi_0778 0.49 +2.3 877,827 - Echvi_0778 0.49 +1.9 877,827 - Echvi_0778 0.49 +2.3 877,860 + Echvi_0778 0.50 +1.8 877,944 + Echvi_0778 0.53 +2.6 877,944 + Echvi_0778 0.53 +3.6 877,947 + Echvi_0778 0.53 +2.6 877,947 + Echvi_0778 0.53 +1.1 877,948 - Echvi_0778 0.53 +5.2 877,965 + Echvi_0778 0.54 +4.1 877,966 - Echvi_0778 0.54 +3.5 877,966 - Echvi_0778 0.54 +2.0 877,966 - Echvi_0778 0.54 +3.4 877,966 - Echvi_0778 0.54 +3.2 877,966 - Echvi_0778 0.54 +2.1 877,967 + Echvi_0778 0.54 +2.2 877,997 + Echvi_0778 0.55 +2.4 877,997 + Echvi_0778 0.55 +3.2 878,115 - Echvi_0778 0.59 +3.0 878,126 - Echvi_0778 0.59 +2.1 878,144 + Echvi_0778 0.60 +3.1 878,144 + Echvi_0778 0.60 +2.5 878,145 - Echvi_0778 0.60 +2.9 878,179 + Echvi_0778 0.61 +3.0 878,180 - Echvi_0778 0.61 +2.6 878,194 - Echvi_0778 0.61 +3.2 878,221 + Echvi_0778 0.62 +2.4 878,221 + Echvi_0778 0.62 +2.4 878,221 + Echvi_0778 0.62 +2.0 878,321 + Echvi_0778 0.66 +2.8 878,321 + Echvi_0778 0.66 +2.5 878,484 + Echvi_0778 0.71 +2.0 878,503 - Echvi_0778 0.72 +2.2 878,574 + Echvi_0778 0.74 +4.8 878,628 + Echvi_0778 0.76 +2.4 878,629 - Echvi_0778 0.76 +2.5 878,629 - Echvi_0778 0.76 +3.3 878,629 - Echvi_0778 0.76 +2.7 878,712 + Echvi_0778 0.79 +2.7 878,712 + Echvi_0778 0.79 +2.8 878,713 - Echvi_0778 0.79 +2.3 878,713 - Echvi_0778 0.79 +2.6 878,715 - Echvi_0778 0.79 +3.3 878,873 + Echvi_0778 0.84 +3.4 878,874 - Echvi_0778 0.84 +1.9 878,874 - Echvi_0778 0.84 +3.4 879,005 + Echvi_0778 0.89 +1.7 879,006 - Echvi_0778 0.89 +3.7 879,008 + Echvi_0778 0.89 +2.6 879,009 - Echvi_0778 0.89 +3.2 879,009 - Echvi_0778 0.89 +3.2 879,009 - Echvi_0778 0.89 +2.2 879,052 + +2.4 879,212 + +0.6 879,213 - +2.9 879,213 - +3.3 879,213 - +2.2 879,275 - +2.6 879,275 - +2.0 879,366 + +3.0 879,367 - -1.8 879,378 + +2.3 879,386 + +2.2 879,429 + +3.1 879,435 + +2.1 879,447 + +2.4 879,447 + +1.9 879,447 + +2.0 879,456 + +0.6 879,456 + +0.0 879,491 + +0.7 879,491 + +0.2 879,491 + -0.7 879,491 + +0.9 879,497 + +0.6 879,497 + +0.6 879,502 + +0.6 879,502 + +2.2 879,502 + +2.2 879,502 + -1.0 879,544 + +2.1 879,591 + Echvi_0779 0.15 +0.9 879,686 + Echvi_0779 0.38 +2.6 879,686 + Echvi_0779 0.38 +3.8 879,737 + Echvi_0779 0.50 +1.7 879,846 + Echvi_0779 0.76 +1.6 879,846 + Echvi_0779 0.76 +1.2 879,846 + Echvi_0779 0.76 +1.1 879,865 + Echvi_0779 0.81 +4.0 879,865 + Echvi_0779 0.81 -1.1 879,866 - Echvi_0779 0.81 +1.2 879,866 - Echvi_0779 0.81 +0.6 879,867 + Echvi_0779 0.81 +0.3 879,867 + Echvi_0779 0.81 -0.1 879,867 + Echvi_0779 0.81 +1.4 879,868 - Echvi_0779 0.82 -1.8 879,879 + Echvi_0779 0.84 +0.6 879,914 + +0.9 879,914 + +2.2
Or see this region's nucleotide sequence