Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0753

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0752 and Echvi_0753 overlap by 4 nucleotidesEchvi_0753 and Echvi_0754 are separated by 84 nucleotides Echvi_0752: Echvi_0752 - Glycosyltransferase, at 842,717 to 844,006 _0752 Echvi_0753: Echvi_0753 - Alpha-amylase/alpha-mannosidase, at 844,003 to 845,214 _0753 Echvi_0754: Echvi_0754 - ATP-dependent chaperone ClpB, at 845,299 to 847,911 _0754 Position (kb) 844 845 846Strain fitness (log2 ratio) -2 -1 0 1 2 3at 843.011 kb on - strand, within Echvi_0752at 843.080 kb on + strand, within Echvi_0752at 843.081 kb on - strand, within Echvi_0752at 843.198 kb on + strand, within Echvi_0752at 843.198 kb on + strand, within Echvi_0752at 843.232 kb on - strand, within Echvi_0752at 843.234 kb on + strand, within Echvi_0752at 843.234 kb on + strand, within Echvi_0752at 843.234 kb on + strand, within Echvi_0752at 843.234 kb on + strand, within Echvi_0752at 843.235 kb on - strand, within Echvi_0752at 843.235 kb on - strand, within Echvi_0752at 843.290 kb on + strand, within Echvi_0752at 843.290 kb on + strand, within Echvi_0752at 843.291 kb on - strand, within Echvi_0752at 843.291 kb on - strand, within Echvi_0752at 843.326 kb on - strand, within Echvi_0752at 843.471 kb on + strand, within Echvi_0752at 843.472 kb on - strand, within Echvi_0752at 843.472 kb on - strand, within Echvi_0752at 843.515 kb on + strand, within Echvi_0752at 843.515 kb on + strand, within Echvi_0752at 843.515 kb on + strand, within Echvi_0752at 843.561 kb on + strand, within Echvi_0752at 843.561 kb on + strand, within Echvi_0752at 843.702 kb on + strand, within Echvi_0752at 843.702 kb on + strand, within Echvi_0752at 843.703 kb on - strand, within Echvi_0752at 843.703 kb on - strand, within Echvi_0752at 843.703 kb on - strand, within Echvi_0752at 843.703 kb on - strand, within Echvi_0752at 843.703 kb on - strand, within Echvi_0752at 843.704 kb on + strand, within Echvi_0752at 843.704 kb on + strand, within Echvi_0752at 843.705 kb on - strand, within Echvi_0752at 843.705 kb on - strand, within Echvi_0752at 843.705 kb on - strand, within Echvi_0752at 843.705 kb on - strand, within Echvi_0752at 843.761 kb on + strand, within Echvi_0752at 843.767 kb on - strand, within Echvi_0752at 843.843 kb on + strand, within Echvi_0752at 843.844 kb on - strand, within Echvi_0752at 843.844 kb on - strand, within Echvi_0752at 843.864 kb on + strand, within Echvi_0752at 843.864 kb on + strand, within Echvi_0752at 843.864 kb on + strand, within Echvi_0752at 843.865 kb on - strand, within Echvi_0752at 843.975 kb on - strandat 843.993 kb on + strandat 843.994 kb on - strandat 843.994 kb on - strandat 844.021 kb on + strandat 844.130 kb on + strand, within Echvi_0753at 844.200 kb on + strand, within Echvi_0753at 844.201 kb on - strand, within Echvi_0753at 844.227 kb on - strand, within Echvi_0753at 844.231 kb on - strand, within Echvi_0753at 844.231 kb on - strand, within Echvi_0753at 844.249 kb on + strand, within Echvi_0753at 844.311 kb on - strand, within Echvi_0753at 844.321 kb on + strand, within Echvi_0753at 844.321 kb on + strand, within Echvi_0753at 844.321 kb on + strand, within Echvi_0753at 844.321 kb on + strand, within Echvi_0753at 844.321 kb on + strand, within Echvi_0753at 844.322 kb on - strand, within Echvi_0753at 844.416 kb on + strand, within Echvi_0753at 844.416 kb on + strand, within Echvi_0753at 844.417 kb on - strand, within Echvi_0753at 844.427 kb on + strand, within Echvi_0753at 844.521 kb on + strand, within Echvi_0753at 844.521 kb on + strand, within Echvi_0753at 844.546 kb on + strand, within Echvi_0753at 844.546 kb on + strand, within Echvi_0753at 844.546 kb on + strand, within Echvi_0753at 844.546 kb on + strand, within Echvi_0753at 844.546 kb on + strand, within Echvi_0753at 844.547 kb on - strand, within Echvi_0753at 844.547 kb on - strand, within Echvi_0753at 844.547 kb on - strand, within Echvi_0753at 844.547 kb on - strand, within Echvi_0753at 844.553 kb on - strand, within Echvi_0753at 844.660 kb on - strand, within Echvi_0753at 844.662 kb on + strand, within Echvi_0753at 844.663 kb on - strand, within Echvi_0753at 844.722 kb on - strand, within Echvi_0753at 844.725 kb on + strand, within Echvi_0753at 844.732 kb on + strand, within Echvi_0753at 844.733 kb on - strand, within Echvi_0753at 844.877 kb on + strand, within Echvi_0753at 845.033 kb on - strand, within Echvi_0753at 845.033 kb on - strand, within Echvi_0753at 845.056 kb on + strand, within Echvi_0753at 845.057 kb on - strand, within Echvi_0753at 845.057 kb on - strand, within Echvi_0753at 845.059 kb on + strand, within Echvi_0753at 845.060 kb on - strand, within Echvi_0753at 845.060 kb on - strand, within Echvi_0753at 845.061 kb on + strand, within Echvi_0753at 845.061 kb on + strand, within Echvi_0753at 845.061 kb on + strand, within Echvi_0753at 845.061 kb on + strand, within Echvi_0753at 845.061 kb on + strand, within Echvi_0753at 845.061 kb on + strand, within Echvi_0753at 845.062 kb on - strand, within Echvi_0753at 845.062 kb on - strand, within Echvi_0753at 845.062 kb on - strand, within Echvi_0753at 845.062 kb on - strand, within Echvi_0753at 845.062 kb on - strand, within Echvi_0753at 845.062 kb on - strand, within Echvi_0753at 845.092 kb on - strand, within Echvi_0753at 845.136 kb on + strandat 845.136 kb on + strandat 845.137 kb on - strandat 845.137 kb on - strandat 845.274 kb on + strandat 845.720 kb on - strand, within Echvi_0754at 845.782 kb on - strand, within Echvi_0754at 845.808 kb on + strand, within Echvi_0754at 845.808 kb on + strand, within Echvi_0754at 845.823 kb on + strand, within Echvi_0754at 845.851 kb on - strand, within Echvi_0754at 845.851 kb on - strand, within Echvi_0754at 845.948 kb on + strand, within Echvi_0754at 846.054 kb on - strand, within Echvi_0754at 846.132 kb on + strand, within Echvi_0754at 846.159 kb on + strand, within Echvi_0754at 846.160 kb on - strand, within Echvi_0754

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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843,011 - Echvi_0752 0.23 -0.4
843,080 + Echvi_0752 0.28 +1.3
843,081 - Echvi_0752 0.28 +0.7
843,198 + Echvi_0752 0.37 -1.0
843,198 + Echvi_0752 0.37 -0.4
843,232 - Echvi_0752 0.40 -0.7
843,234 + Echvi_0752 0.40 -0.3
843,234 + Echvi_0752 0.40 +1.3
843,234 + Echvi_0752 0.40 -0.6
843,234 + Echvi_0752 0.40 +0.9
843,235 - Echvi_0752 0.40 -0.2
843,235 - Echvi_0752 0.40 +0.3
843,290 + Echvi_0752 0.44 -0.1
843,290 + Echvi_0752 0.44 +0.2
843,291 - Echvi_0752 0.44 +0.8
843,291 - Echvi_0752 0.44 -0.4
843,326 - Echvi_0752 0.47 -1.1
843,471 + Echvi_0752 0.58 -1.5
843,472 - Echvi_0752 0.59 -1.5
843,472 - Echvi_0752 0.59 -0.0
843,515 + Echvi_0752 0.62 -0.3
843,515 + Echvi_0752 0.62 +0.6
843,515 + Echvi_0752 0.62 +0.3
843,561 + Echvi_0752 0.65 +0.6
843,561 + Echvi_0752 0.65 -0.9
843,702 + Echvi_0752 0.76 +0.6
843,702 + Echvi_0752 0.76 +0.4
843,703 - Echvi_0752 0.76 -0.6
843,703 - Echvi_0752 0.76 +0.6
843,703 - Echvi_0752 0.76 +2.2
843,703 - Echvi_0752 0.76 -1.5
843,703 - Echvi_0752 0.76 +1.2
843,704 + Echvi_0752 0.77 -0.6
843,704 + Echvi_0752 0.77 +0.5
843,705 - Echvi_0752 0.77 -1.1
843,705 - Echvi_0752 0.77 -0.5
843,705 - Echvi_0752 0.77 +0.6
843,705 - Echvi_0752 0.77 +1.2
843,761 + Echvi_0752 0.81 +0.5
843,767 - Echvi_0752 0.81 +0.5
843,843 + Echvi_0752 0.87 +1.8
843,844 - Echvi_0752 0.87 +1.0
843,844 - Echvi_0752 0.87 +0.8
843,864 + Echvi_0752 0.89 +0.3
843,864 + Echvi_0752 0.89 +0.4
843,864 + Echvi_0752 0.89 +0.3
843,865 - Echvi_0752 0.89 +1.8
843,975 - +0.4
843,993 + +0.3
843,994 - +0.6
843,994 - -2.1
844,021 + -1.4
844,130 + Echvi_0753 0.10 +3.2
844,200 + Echvi_0753 0.16 -0.9
844,201 - Echvi_0753 0.16 -0.6
844,227 - Echvi_0753 0.18 +0.9
844,231 - Echvi_0753 0.19 -0.3
844,231 - Echvi_0753 0.19 +0.3
844,249 + Echvi_0753 0.20 +1.2
844,311 - Echvi_0753 0.25 -1.1
844,321 + Echvi_0753 0.26 -0.0
844,321 + Echvi_0753 0.26 -0.2
844,321 + Echvi_0753 0.26 +0.2
844,321 + Echvi_0753 0.26 -0.2
844,321 + Echvi_0753 0.26 -0.2
844,322 - Echvi_0753 0.26 +0.2
844,416 + Echvi_0753 0.34 -0.2
844,416 + Echvi_0753 0.34 +1.2
844,417 - Echvi_0753 0.34 -0.2
844,427 + Echvi_0753 0.35 -0.9
844,521 + Echvi_0753 0.43 -0.7
844,521 + Echvi_0753 0.43 -0.9
844,546 + Echvi_0753 0.45 +1.4
844,546 + Echvi_0753 0.45 +1.4
844,546 + Echvi_0753 0.45 -0.0
844,546 + Echvi_0753 0.45 +1.9
844,546 + Echvi_0753 0.45 -0.7
844,547 - Echvi_0753 0.45 -1.3
844,547 - Echvi_0753 0.45 +0.2
844,547 - Echvi_0753 0.45 -1.8
844,547 - Echvi_0753 0.45 +0.0
844,553 - Echvi_0753 0.45 -0.2
844,660 - Echvi_0753 0.54 +0.1
844,662 + Echvi_0753 0.54 +0.5
844,663 - Echvi_0753 0.54 -0.6
844,722 - Echvi_0753 0.59 +0.9
844,725 + Echvi_0753 0.60 +2.8
844,732 + Echvi_0753 0.60 -1.4
844,733 - Echvi_0753 0.60 -1.9
844,877 + Echvi_0753 0.72 +2.1
845,033 - Echvi_0753 0.85 +0.7
845,033 - Echvi_0753 0.85 +1.5
845,056 + Echvi_0753 0.87 -0.3
845,057 - Echvi_0753 0.87 -2.5
845,057 - Echvi_0753 0.87 +0.3
845,059 + Echvi_0753 0.87 +0.0
845,060 - Echvi_0753 0.87 -0.5
845,060 - Echvi_0753 0.87 -0.2
845,061 + Echvi_0753 0.87 +0.7
845,061 + Echvi_0753 0.87 -0.4
845,061 + Echvi_0753 0.87 +1.2
845,061 + Echvi_0753 0.87 +1.0
845,061 + Echvi_0753 0.87 +0.2
845,061 + Echvi_0753 0.87 -0.4
845,062 - Echvi_0753 0.87 +0.0
845,062 - Echvi_0753 0.87 -0.2
845,062 - Echvi_0753 0.87 +1.6
845,062 - Echvi_0753 0.87 -0.4
845,062 - Echvi_0753 0.87 -0.4
845,062 - Echvi_0753 0.87 -0.5
845,092 - Echvi_0753 0.90 +0.6
845,136 + -0.3
845,136 + +1.2
845,137 - -0.6
845,137 - +0.7
845,274 + -0.2
845,720 - Echvi_0754 0.16 +0.4
845,782 - Echvi_0754 0.18 -0.2
845,808 + Echvi_0754 0.19 -0.3
845,808 + Echvi_0754 0.19 +3.3
845,823 + Echvi_0754 0.20 -1.6
845,851 - Echvi_0754 0.21 +0.7
845,851 - Echvi_0754 0.21 -1.2
845,948 + Echvi_0754 0.25 -0.3
846,054 - Echvi_0754 0.29 +0.6
846,132 + Echvi_0754 0.32 +1.3
846,159 + Echvi_0754 0.33 +0.2
846,160 - Echvi_0754 0.33 -0.8

Or see this region's nucleotide sequence