Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0739

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0738 and Echvi_0739 are separated by 285 nucleotidesEchvi_0739 and Echvi_0740 are separated by 62 nucleotidesEchvi_0740 and Echvi_0741 are separated by 112 nucleotides Echvi_0738: Echvi_0738 - Acyl-CoA dehydrogenases, at 827,101 to 828,459 _0738 Echvi_0739: Echvi_0739 - hypothetical protein, at 828,745 to 829,599 _0739 Echvi_0740: Echvi_0740 - Lysophospholipase L1 and related esterases, at 829,662 to 830,321 _0740 Echvi_0741: Echvi_0741 - Putative NADPH-quinone reductase (modulator of drug activity B), at 830,434 to 831,012 _0741 Position (kb) 828 829 830Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 827.859 kb on + strand, within Echvi_0738at 827.860 kb on - strand, within Echvi_0738at 828.076 kb on + strand, within Echvi_0738at 828.077 kb on - strand, within Echvi_0738at 828.261 kb on + strand, within Echvi_0738at 828.262 kb on - strand, within Echvi_0738at 828.274 kb on - strand, within Echvi_0738at 828.343 kb on + strandat 828.383 kb on - strandat 828.383 kb on - strandat 828.383 kb on - strandat 828.388 kb on + strandat 828.389 kb on - strandat 828.389 kb on - strandat 828.492 kb on - strandat 828.494 kb on + strandat 828.495 kb on - strandat 828.497 kb on - strandat 828.513 kb on - strandat 828.513 kb on - strandat 828.543 kb on + strandat 828.544 kb on - strandat 828.553 kb on + strandat 828.553 kb on + strandat 828.554 kb on - strandat 828.554 kb on - strandat 828.554 kb on - strandat 828.558 kb on + strandat 828.574 kb on + strandat 828.575 kb on - strandat 828.575 kb on - strandat 828.619 kb on + strandat 828.619 kb on + strandat 828.639 kb on + strandat 828.639 kb on + strandat 828.639 kb on + strandat 828.642 kb on + strandat 828.643 kb on - strandat 828.687 kb on - strandat 828.776 kb on - strandat 828.779 kb on + strandat 828.866 kb on - strand, within Echvi_0739at 828.878 kb on + strand, within Echvi_0739at 828.879 kb on - strand, within Echvi_0739at 828.884 kb on + strand, within Echvi_0739at 828.884 kb on + strand, within Echvi_0739at 828.885 kb on - strand, within Echvi_0739at 828.923 kb on + strand, within Echvi_0739at 828.924 kb on - strand, within Echvi_0739at 829.011 kb on + strand, within Echvi_0739at 829.021 kb on - strand, within Echvi_0739at 829.021 kb on - strand, within Echvi_0739at 829.025 kb on + strand, within Echvi_0739at 829.026 kb on - strand, within Echvi_0739at 829.032 kb on + strand, within Echvi_0739at 829.034 kb on + strand, within Echvi_0739at 829.035 kb on - strand, within Echvi_0739at 829.048 kb on + strand, within Echvi_0739at 829.049 kb on - strand, within Echvi_0739at 829.049 kb on - strand, within Echvi_0739at 829.054 kb on - strand, within Echvi_0739at 829.155 kb on + strand, within Echvi_0739at 829.156 kb on - strand, within Echvi_0739at 829.157 kb on + strand, within Echvi_0739at 829.157 kb on + strand, within Echvi_0739at 829.158 kb on - strand, within Echvi_0739at 829.170 kb on + strand, within Echvi_0739at 829.174 kb on + strand, within Echvi_0739at 829.188 kb on + strand, within Echvi_0739at 829.224 kb on + strand, within Echvi_0739at 829.429 kb on - strand, within Echvi_0739at 829.431 kb on - strand, within Echvi_0739at 829.441 kb on + strandat 829.442 kb on - strand, within Echvi_0739at 829.463 kb on + strand, within Echvi_0739at 829.464 kb on - strand, within Echvi_0739at 829.464 kb on - strand, within Echvi_0739at 829.484 kb on - strand, within Echvi_0739at 829.559 kb on + strandat 829.560 kb on - strandat 829.563 kb on + strandat 829.599 kb on + strandat 829.599 kb on + strandat 829.603 kb on + strandat 829.603 kb on + strandat 829.638 kb on + strandat 829.644 kb on + strandat 829.644 kb on + strandat 829.645 kb on - strandat 829.660 kb on - strandat 829.711 kb on + strandat 829.754 kb on + strandat 829.755 kb on - strand, within Echvi_0740at 829.757 kb on + strand, within Echvi_0740at 829.758 kb on - strand, within Echvi_0740at 829.854 kb on + strand, within Echvi_0740at 829.908 kb on + strand, within Echvi_0740at 829.908 kb on + strand, within Echvi_0740at 830.013 kb on + strand, within Echvi_0740at 830.014 kb on - strand, within Echvi_0740at 830.014 kb on - strand, within Echvi_0740at 830.015 kb on + strand, within Echvi_0740at 830.016 kb on - strand, within Echvi_0740at 830.038 kb on - strand, within Echvi_0740at 830.038 kb on - strand, within Echvi_0740at 830.089 kb on + strand, within Echvi_0740at 830.089 kb on + strand, within Echvi_0740at 830.089 kb on + strand, within Echvi_0740at 830.089 kb on + strand, within Echvi_0740at 830.090 kb on - strand, within Echvi_0740at 830.090 kb on - strand, within Echvi_0740at 830.090 kb on - strand, within Echvi_0740at 830.090 kb on - strand, within Echvi_0740at 830.091 kb on + strand, within Echvi_0740at 830.091 kb on + strand, within Echvi_0740at 830.091 kb on + strand, within Echvi_0740at 830.091 kb on + strand, within Echvi_0740at 830.092 kb on - strand, within Echvi_0740at 830.092 kb on - strand, within Echvi_0740at 830.095 kb on + strand, within Echvi_0740at 830.095 kb on + strand, within Echvi_0740at 830.095 kb on + strand, within Echvi_0740at 830.095 kb on + strand, within Echvi_0740at 830.095 kb on + strand, within Echvi_0740at 830.095 kb on + strand, within Echvi_0740at 830.095 kb on + strand, within Echvi_0740at 830.095 kb on + strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.096 kb on - strand, within Echvi_0740at 830.146 kb on + strand, within Echvi_0740at 830.146 kb on + strand, within Echvi_0740at 830.147 kb on - strand, within Echvi_0740at 830.147 kb on - strand, within Echvi_0740at 830.192 kb on + strand, within Echvi_0740at 830.315 kb on + strandat 830.320 kb on - strandat 830.320 kb on - strandat 830.375 kb on + strandat 830.375 kb on + strandat 830.380 kb on + strandat 830.380 kb on + strandat 830.381 kb on - strandat 830.390 kb on + strandat 830.391 kb on - strandat 830.391 kb on - strandat 830.424 kb on - strandat 830.435 kb on + strandat 830.436 kb on - strandat 830.436 kb on - strandat 830.466 kb on + strandat 830.467 kb on - strandat 830.545 kb on + strand, within Echvi_0741at 830.545 kb on + strand, within Echvi_0741at 830.577 kb on + strand, within Echvi_0741at 830.577 kb on + strand, within Echvi_0741

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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827,859 + Echvi_0738 0.56 +0.4
827,860 - Echvi_0738 0.56 +0.5
828,076 + Echvi_0738 0.72 +0.2
828,077 - Echvi_0738 0.72 -1.0
828,261 + Echvi_0738 0.85 +0.7
828,262 - Echvi_0738 0.85 +0.3
828,274 - Echvi_0738 0.86 +0.2
828,343 + -0.8
828,383 - +0.6
828,383 - -1.5
828,383 - +0.9
828,388 + +0.8
828,389 - +1.1
828,389 - -0.2
828,492 - -0.3
828,494 + +1.0
828,495 - +0.2
828,497 - -0.2
828,513 - +1.7
828,513 - +2.0
828,543 + +2.7
828,544 - +0.6
828,553 + -0.6
828,553 + +0.0
828,554 - +0.1
828,554 - -0.2
828,554 - -0.9
828,558 + +0.6
828,574 + +1.0
828,575 - +0.2
828,575 - +0.1
828,619 + -0.6
828,619 + -0.2
828,639 + +0.3
828,639 + -0.8
828,639 + -1.2
828,642 + -0.3
828,643 - -0.2
828,687 - +0.3
828,776 - +1.0
828,779 + +0.1
828,866 - Echvi_0739 0.14 -0.3
828,878 + Echvi_0739 0.16 +0.8
828,879 - Echvi_0739 0.16 +1.0
828,884 + Echvi_0739 0.16 +0.8
828,884 + Echvi_0739 0.16 -0.2
828,885 - Echvi_0739 0.16 +0.9
828,923 + Echvi_0739 0.21 +0.1
828,924 - Echvi_0739 0.21 +0.6
829,011 + Echvi_0739 0.31 +0.9
829,021 - Echvi_0739 0.32 +1.0
829,021 - Echvi_0739 0.32 +0.4
829,025 + Echvi_0739 0.33 +1.0
829,026 - Echvi_0739 0.33 -0.1
829,032 + Echvi_0739 0.34 -0.3
829,034 + Echvi_0739 0.34 +0.0
829,035 - Echvi_0739 0.34 +0.2
829,048 + Echvi_0739 0.35 +0.2
829,049 - Echvi_0739 0.36 +1.7
829,049 - Echvi_0739 0.36 +1.8
829,054 - Echvi_0739 0.36 +2.0
829,155 + Echvi_0739 0.48 -0.4
829,156 - Echvi_0739 0.48 +0.1
829,157 + Echvi_0739 0.48 +2.6
829,157 + Echvi_0739 0.48 +1.0
829,158 - Echvi_0739 0.48 +0.7
829,170 + Echvi_0739 0.50 +1.0
829,174 + Echvi_0739 0.50 +0.7
829,188 + Echvi_0739 0.52 +1.6
829,224 + Echvi_0739 0.56 -2.3
829,429 - Echvi_0739 0.80 +1.2
829,431 - Echvi_0739 0.80 +1.9
829,441 + +3.7
829,442 - Echvi_0739 0.82 +2.2
829,463 + Echvi_0739 0.84 +5.6
829,464 - Echvi_0739 0.84 +1.4
829,464 - Echvi_0739 0.84 -0.1
829,484 - Echvi_0739 0.86 +2.0
829,559 + +0.9
829,560 - +0.6
829,563 + +1.0
829,599 + +0.4
829,599 + +0.3
829,603 + +0.2
829,603 + -1.4
829,638 + +0.1
829,644 + +1.6
829,644 + +0.3
829,645 - +0.7
829,660 - +0.9
829,711 + -0.6
829,754 + -0.2
829,755 - Echvi_0740 0.14 -0.2
829,757 + Echvi_0740 0.14 -0.8
829,758 - Echvi_0740 0.15 -0.0
829,854 + Echvi_0740 0.29 +0.2
829,908 + Echvi_0740 0.37 +0.8
829,908 + Echvi_0740 0.37 +3.7
830,013 + Echvi_0740 0.53 +0.4
830,014 - Echvi_0740 0.53 -0.7
830,014 - Echvi_0740 0.53 -0.9
830,015 + Echvi_0740 0.53 +1.0
830,016 - Echvi_0740 0.54 -0.5
830,038 - Echvi_0740 0.57 -0.5
830,038 - Echvi_0740 0.57 -0.7
830,089 + Echvi_0740 0.65 +3.2
830,089 + Echvi_0740 0.65 +1.5
830,089 + Echvi_0740 0.65 +0.4
830,089 + Echvi_0740 0.65 +1.2
830,090 - Echvi_0740 0.65 +1.7
830,090 - Echvi_0740 0.65 +0.7
830,090 - Echvi_0740 0.65 +1.3
830,090 - Echvi_0740 0.65 +1.4
830,091 + Echvi_0740 0.65 +0.1
830,091 + Echvi_0740 0.65 -0.0
830,091 + Echvi_0740 0.65 +0.5
830,091 + Echvi_0740 0.65 -0.8
830,092 - Echvi_0740 0.65 -0.3
830,092 - Echvi_0740 0.65 -0.2
830,095 + Echvi_0740 0.66 -0.2
830,095 + Echvi_0740 0.66 +0.1
830,095 + Echvi_0740 0.66 +0.8
830,095 + Echvi_0740 0.66 +0.3
830,095 + Echvi_0740 0.66 -0.3
830,095 + Echvi_0740 0.66 -1.0
830,095 + Echvi_0740 0.66 +1.7
830,095 + Echvi_0740 0.66 +0.7
830,096 - Echvi_0740 0.66 -0.3
830,096 - Echvi_0740 0.66 -0.4
830,096 - Echvi_0740 0.66 +0.4
830,096 - Echvi_0740 0.66 -1.6
830,096 - Echvi_0740 0.66 -1.4
830,096 - Echvi_0740 0.66 -0.0
830,096 - Echvi_0740 0.66 -0.2
830,096 - Echvi_0740 0.66 -0.6
830,096 - Echvi_0740 0.66 -0.3
830,096 - Echvi_0740 0.66 +0.3
830,146 + Echvi_0740 0.73 -0.4
830,146 + Echvi_0740 0.73 +0.1
830,147 - Echvi_0740 0.73 +0.4
830,147 - Echvi_0740 0.73 -0.5
830,192 + Echvi_0740 0.80 +0.2
830,315 + -0.2
830,320 - +0.3
830,320 - +0.4
830,375 + +1.7
830,375 + -0.7
830,380 + -0.6
830,380 + -1.4
830,381 - +0.7
830,390 + +0.6
830,391 - -1.0
830,391 - +1.6
830,424 - -0.4
830,435 + -0.4
830,436 - -1.6
830,436 - +0.8
830,466 + -0.4
830,467 - -0.4
830,545 + Echvi_0741 0.19 +0.7
830,545 + Echvi_0741 0.19 -0.6
830,577 + Echvi_0741 0.25 -0.6
830,577 + Echvi_0741 0.25 -0.1

Or see this region's nucleotide sequence