Experiment: m.b. Carbenicillin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0668 and Echvi_0669 overlap by 14 nucleotides Echvi_0669 and Echvi_0670 are separated by 206 nucleotides Echvi_0670 and Echvi_0671 are separated by 8 nucleotides
Echvi_0668: Echvi_0668 - Geranylgeranyl pyrophosphate synthase, at 750,138 to 751,130
_0668
Echvi_0669: Echvi_0669 - ribonuclease R, at 751,117 to 753,291
_0669
Echvi_0670: Echvi_0670 - DNA polymerase elongation subunit (family B), at 753,498 to 754,223
_0670
Echvi_0671: Echvi_0671 - hypothetical protein, at 754,232 to 754,633
_0671
Position (kb) 751
752
753
754 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 750.121 kb on + strand at 751.148 kb on - strand at 753.167 kb on - strand at 753.244 kb on - strand at 753.333 kb on - strand at 753.380 kb on - strand at 753.400 kb on - strand at 753.416 kb on + strand at 753.416 kb on + strand at 753.440 kb on + strand at 753.457 kb on + strand at 753.457 kb on + strand at 753.458 kb on - strand at 753.469 kb on + strand at 753.470 kb on - strand at 753.477 kb on + strand at 753.478 kb on - strand at 753.499 kb on + strand at 753.499 kb on + strand at 753.499 kb on + strand at 753.500 kb on - strand at 753.530 kb on + strand at 753.560 kb on - strand at 753.560 kb on - strand at 753.580 kb on - strand, within Echvi_0670 at 753.587 kb on + strand, within Echvi_0670 at 753.595 kb on + strand, within Echvi_0670 at 753.596 kb on - strand, within Echvi_0670 at 753.596 kb on - strand, within Echvi_0670 at 753.596 kb on - strand, within Echvi_0670 at 753.596 kb on - strand, within Echvi_0670 at 753.599 kb on + strand, within Echvi_0670 at 753.600 kb on - strand, within Echvi_0670 at 753.657 kb on + strand, within Echvi_0670 at 753.657 kb on + strand, within Echvi_0670 at 753.657 kb on + strand, within Echvi_0670 at 753.657 kb on + strand, within Echvi_0670 at 753.657 kb on + strand, within Echvi_0670 at 753.657 kb on + strand, within Echvi_0670 at 753.658 kb on - strand, within Echvi_0670 at 753.658 kb on - strand, within Echvi_0670 at 753.658 kb on - strand, within Echvi_0670 at 753.658 kb on - strand, within Echvi_0670 at 753.658 kb on - strand, within Echvi_0670 at 753.659 kb on + strand, within Echvi_0670 at 753.659 kb on + strand, within Echvi_0670 at 753.715 kb on + strand, within Echvi_0670 at 753.722 kb on + strand, within Echvi_0670 at 753.722 kb on + strand, within Echvi_0670 at 753.722 kb on + strand, within Echvi_0670 at 753.723 kb on - strand, within Echvi_0670 at 753.723 kb on - strand, within Echvi_0670 at 753.723 kb on - strand, within Echvi_0670 at 753.723 kb on - strand, within Echvi_0670 at 753.723 kb on - strand, within Echvi_0670 at 753.724 kb on + strand, within Echvi_0670 at 753.814 kb on - strand, within Echvi_0670 at 753.818 kb on + strand, within Echvi_0670 at 753.819 kb on - strand, within Echvi_0670 at 753.900 kb on + strand, within Echvi_0670 at 753.991 kb on + strand, within Echvi_0670 at 754.039 kb on + strand, within Echvi_0670 at 754.039 kb on + strand, within Echvi_0670 at 754.039 kb on + strand, within Echvi_0670 at 754.039 kb on + strand, within Echvi_0670 at 754.040 kb on - strand, within Echvi_0670 at 754.040 kb on - strand, within Echvi_0670 at 754.040 kb on - strand, within Echvi_0670 at 754.040 kb on - strand, within Echvi_0670 at 754.040 kb on - strand, within Echvi_0670 at 754.041 kb on + strand, within Echvi_0670 at 754.042 kb on - strand, within Echvi_0670 at 754.042 kb on - strand, within Echvi_0670 at 754.043 kb on + strand, within Echvi_0670 at 754.043 kb on + strand, within Echvi_0670 at 754.060 kb on + strand, within Echvi_0670 at 754.062 kb on + strand, within Echvi_0670 at 754.128 kb on + strand, within Echvi_0670 at 754.224 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml remove 750,121 + -0.1 751,148 - +1.8 753,167 - +0.8 753,244 - -0.9 753,333 - +1.4 753,380 - -0.0 753,400 - -1.0 753,416 + -0.7 753,416 + -0.5 753,440 + +0.5 753,457 + -1.2 753,457 + -0.2 753,458 - -0.4 753,469 + +0.7 753,470 - -1.3 753,477 + -1.2 753,478 - -2.0 753,499 + +0.7 753,499 + -0.3 753,499 + -0.6 753,500 - +0.5 753,530 + -0.1 753,560 - -0.9 753,560 - -1.8 753,580 - Echvi_0670 0.11 -1.4 753,587 + Echvi_0670 0.12 -0.2 753,595 + Echvi_0670 0.13 -0.3 753,596 - Echvi_0670 0.13 -0.2 753,596 - Echvi_0670 0.13 -2.3 753,596 - Echvi_0670 0.13 +0.3 753,596 - Echvi_0670 0.13 -2.3 753,599 + Echvi_0670 0.14 -0.4 753,600 - Echvi_0670 0.14 -1.2 753,657 + Echvi_0670 0.22 -0.6 753,657 + Echvi_0670 0.22 +3.1 753,657 + Echvi_0670 0.22 -0.6 753,657 + Echvi_0670 0.22 -0.0 753,657 + Echvi_0670 0.22 -0.0 753,657 + Echvi_0670 0.22 -0.3 753,658 - Echvi_0670 0.22 +1.3 753,658 - Echvi_0670 0.22 +0.5 753,658 - Echvi_0670 0.22 -0.5 753,658 - Echvi_0670 0.22 -1.4 753,658 - Echvi_0670 0.22 +0.3 753,659 + Echvi_0670 0.22 -0.8 753,659 + Echvi_0670 0.22 -1.1 753,715 + Echvi_0670 0.30 +0.6 753,722 + Echvi_0670 0.31 -0.5 753,722 + Echvi_0670 0.31 -0.1 753,722 + Echvi_0670 0.31 -0.4 753,723 - Echvi_0670 0.31 -1.3 753,723 - Echvi_0670 0.31 +0.1 753,723 - Echvi_0670 0.31 -0.9 753,723 - Echvi_0670 0.31 -1.7 753,723 - Echvi_0670 0.31 -0.7 753,724 + Echvi_0670 0.31 -0.1 753,814 - Echvi_0670 0.44 +0.5 753,818 + Echvi_0670 0.44 -1.0 753,819 - Echvi_0670 0.44 -0.1 753,900 + Echvi_0670 0.55 +0.3 753,991 + Echvi_0670 0.68 +0.9 754,039 + Echvi_0670 0.75 -0.2 754,039 + Echvi_0670 0.75 -1.8 754,039 + Echvi_0670 0.75 -0.2 754,039 + Echvi_0670 0.75 +1.2 754,040 - Echvi_0670 0.75 +0.1 754,040 - Echvi_0670 0.75 -0.3 754,040 - Echvi_0670 0.75 -1.2 754,040 - Echvi_0670 0.75 -1.4 754,040 - Echvi_0670 0.75 +0.2 754,041 + Echvi_0670 0.75 -0.3 754,042 - Echvi_0670 0.75 -1.3 754,042 - Echvi_0670 0.75 -2.3 754,043 + Echvi_0670 0.75 -0.3 754,043 + Echvi_0670 0.75 -0.7 754,060 + Echvi_0670 0.77 -0.1 754,062 + Echvi_0670 0.78 +0.5 754,128 + Echvi_0670 0.87 -1.3 754,224 - +2.1
Or see this region's nucleotide sequence