Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0605

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0603 and Echvi_0604 are separated by 221 nucleotidesEchvi_0604 and Echvi_0605 are separated by 68 nucleotidesEchvi_0605 and Echvi_0606 are separated by 59 nucleotides Echvi_0603: Echvi_0603 - RNA polymerase sigma factor, sigma-70 family, at 680,093 to 680,641 _0603 Echvi_0604: Echvi_0604 - Predicted redox protein, regulator of disulfide bond formation, at 680,863 to 681,267 _0604 Echvi_0605: Echvi_0605 - hypothetical protein, at 681,336 to 682,067 _0605 Echvi_0606: Echvi_0606 - lipoate synthase, at 682,127 to 683,005 _0606 Position (kb) 681 682 683Strain fitness (log2 ratio) -2 -1 0 1 2at 680.337 kb on + strand, within Echvi_0603at 680.385 kb on - strand, within Echvi_0603at 680.385 kb on - strand, within Echvi_0603at 680.401 kb on - strand, within Echvi_0603at 680.413 kb on + strand, within Echvi_0603at 680.414 kb on - strand, within Echvi_0603at 680.472 kb on - strand, within Echvi_0603at 680.492 kb on - strand, within Echvi_0603at 680.498 kb on - strand, within Echvi_0603at 680.557 kb on + strand, within Echvi_0603at 680.557 kb on + strand, within Echvi_0603at 680.558 kb on - strand, within Echvi_0603at 680.568 kb on + strand, within Echvi_0603at 680.568 kb on + strand, within Echvi_0603at 680.578 kb on + strand, within Echvi_0603at 680.605 kb on + strandat 680.631 kb on + strandat 680.631 kb on + strandat 680.631 kb on + strandat 680.631 kb on + strandat 680.654 kb on + strandat 680.654 kb on + strandat 680.661 kb on + strandat 680.661 kb on + strandat 680.662 kb on - strandat 680.662 kb on - strandat 680.672 kb on - strandat 680.686 kb on - strandat 680.700 kb on - strandat 680.700 kb on - strandat 680.712 kb on - strandat 680.734 kb on + strandat 680.766 kb on - strandat 680.790 kb on + strandat 680.790 kb on + strandat 680.791 kb on - strandat 680.843 kb on + strandat 680.843 kb on + strandat 681.022 kb on - strand, within Echvi_0604at 681.061 kb on - strand, within Echvi_0604at 681.086 kb on - strand, within Echvi_0604at 681.131 kb on - strand, within Echvi_0604at 681.259 kb on - strandat 681.259 kb on - strandat 681.262 kb on - strandat 681.295 kb on + strandat 681.296 kb on - strandat 681.296 kb on - strandat 681.300 kb on + strandat 681.300 kb on + strandat 681.300 kb on + strandat 681.300 kb on + strandat 681.300 kb on + strandat 681.300 kb on + strandat 681.301 kb on - strandat 681.321 kb on - strandat 681.328 kb on + strandat 681.335 kb on + strandat 681.335 kb on + strandat 681.354 kb on + strandat 681.394 kb on + strandat 681.423 kb on + strand, within Echvi_0605at 681.424 kb on - strand, within Echvi_0605at 681.455 kb on - strand, within Echvi_0605at 681.490 kb on + strand, within Echvi_0605at 681.491 kb on - strand, within Echvi_0605at 681.492 kb on + strand, within Echvi_0605at 681.492 kb on + strand, within Echvi_0605at 681.492 kb on + strand, within Echvi_0605at 681.493 kb on - strand, within Echvi_0605at 681.583 kb on - strand, within Echvi_0605at 681.583 kb on - strand, within Echvi_0605at 681.584 kb on + strand, within Echvi_0605at 681.627 kb on + strand, within Echvi_0605at 681.628 kb on - strand, within Echvi_0605at 681.635 kb on + strand, within Echvi_0605at 681.636 kb on - strand, within Echvi_0605at 681.636 kb on - strand, within Echvi_0605at 681.636 kb on - strand, within Echvi_0605at 681.709 kb on + strand, within Echvi_0605at 681.721 kb on + strand, within Echvi_0605at 681.721 kb on + strand, within Echvi_0605at 681.721 kb on + strand, within Echvi_0605at 681.722 kb on - strand, within Echvi_0605at 681.722 kb on - strand, within Echvi_0605at 681.722 kb on - strand, within Echvi_0605at 681.742 kb on + strand, within Echvi_0605at 681.742 kb on + strand, within Echvi_0605at 681.742 kb on + strand, within Echvi_0605at 681.742 kb on + strand, within Echvi_0605at 681.742 kb on + strand, within Echvi_0605at 681.743 kb on - strand, within Echvi_0605at 681.743 kb on - strand, within Echvi_0605at 681.753 kb on + strand, within Echvi_0605at 681.753 kb on + strand, within Echvi_0605at 681.754 kb on - strand, within Echvi_0605at 681.754 kb on - strand, within Echvi_0605at 681.755 kb on + strand, within Echvi_0605at 681.755 kb on + strand, within Echvi_0605at 681.799 kb on - strand, within Echvi_0605at 681.828 kb on + strand, within Echvi_0605at 681.828 kb on + strand, within Echvi_0605at 681.829 kb on - strand, within Echvi_0605at 681.830 kb on + strand, within Echvi_0605at 681.830 kb on + strand, within Echvi_0605at 681.830 kb on + strand, within Echvi_0605at 681.830 kb on + strand, within Echvi_0605at 681.830 kb on + strand, within Echvi_0605at 681.830 kb on + strand, within Echvi_0605at 681.830 kb on + strand, within Echvi_0605at 681.831 kb on - strand, within Echvi_0605at 681.831 kb on - strand, within Echvi_0605at 681.831 kb on - strand, within Echvi_0605at 681.832 kb on + strand, within Echvi_0605at 681.833 kb on - strand, within Echvi_0605at 681.833 kb on - strand, within Echvi_0605at 681.835 kb on + strand, within Echvi_0605at 681.836 kb on - strand, within Echvi_0605at 681.836 kb on - strand, within Echvi_0605at 681.836 kb on - strand, within Echvi_0605at 681.896 kb on - strand, within Echvi_0605at 681.936 kb on - strand, within Echvi_0605at 681.961 kb on - strand, within Echvi_0605at 681.981 kb on - strand, within Echvi_0605at 682.001 kb on + strandat 682.022 kb on - strandat 682.036 kb on - strandat 682.040 kb on + strandat 682.041 kb on - strandat 682.065 kb on + strandat 682.073 kb on + strandat 682.074 kb on - strandat 682.995 kb on + strandat 683.028 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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680,337 + Echvi_0603 0.44 +0.0
680,385 - Echvi_0603 0.53 +1.1
680,385 - Echvi_0603 0.53 -0.3
680,401 - Echvi_0603 0.56 +1.4
680,413 + Echvi_0603 0.58 -0.3
680,414 - Echvi_0603 0.58 +1.2
680,472 - Echvi_0603 0.69 +1.2
680,492 - Echvi_0603 0.73 +0.3
680,498 - Echvi_0603 0.74 +1.2
680,557 + Echvi_0603 0.85 -1.5
680,557 + Echvi_0603 0.85 +0.7
680,558 - Echvi_0603 0.85 +0.8
680,568 + Echvi_0603 0.87 -0.3
680,568 + Echvi_0603 0.87 -1.2
680,578 + Echvi_0603 0.88 +0.7
680,605 + -0.5
680,631 + -0.7
680,631 + -0.3
680,631 + +0.6
680,631 + -0.1
680,654 + +0.2
680,654 + -1.1
680,661 + -0.8
680,661 + +0.0
680,662 - +0.9
680,662 - +0.9
680,672 - +1.9
680,686 - +1.1
680,700 - +2.1
680,700 - +0.1
680,712 - -0.0
680,734 + -2.0
680,766 - -0.3
680,790 + +0.5
680,790 + -1.7
680,791 - +0.4
680,843 + +0.1
680,843 + -0.4
681,022 - Echvi_0604 0.39 +0.4
681,061 - Echvi_0604 0.49 -0.5
681,086 - Echvi_0604 0.55 -0.1
681,131 - Echvi_0604 0.66 -0.4
681,259 - +0.6
681,259 - +2.1
681,262 - -0.3
681,295 + -0.3
681,296 - +1.3
681,296 - +1.6
681,300 + +2.1
681,300 + -0.6
681,300 + +0.6
681,300 + +1.7
681,300 + +0.3
681,300 + +0.2
681,301 - +1.9
681,321 - -0.3
681,328 + +0.8
681,335 + -2.6
681,335 + -1.5
681,354 + +1.1
681,394 + -0.4
681,423 + Echvi_0605 0.12 +0.5
681,424 - Echvi_0605 0.12 -0.5
681,455 - Echvi_0605 0.16 +0.6
681,490 + Echvi_0605 0.21 +0.2
681,491 - Echvi_0605 0.21 -0.7
681,492 + Echvi_0605 0.21 -0.1
681,492 + Echvi_0605 0.21 +0.5
681,492 + Echvi_0605 0.21 +0.7
681,493 - Echvi_0605 0.21 -1.4
681,583 - Echvi_0605 0.34 +0.8
681,583 - Echvi_0605 0.34 +0.3
681,584 + Echvi_0605 0.34 -0.4
681,627 + Echvi_0605 0.40 +0.1
681,628 - Echvi_0605 0.40 -0.5
681,635 + Echvi_0605 0.41 +0.2
681,636 - Echvi_0605 0.41 +1.5
681,636 - Echvi_0605 0.41 +1.3
681,636 - Echvi_0605 0.41 +1.1
681,709 + Echvi_0605 0.51 +0.1
681,721 + Echvi_0605 0.53 +0.6
681,721 + Echvi_0605 0.53 +1.6
681,721 + Echvi_0605 0.53 +0.8
681,722 - Echvi_0605 0.53 +1.3
681,722 - Echvi_0605 0.53 -0.6
681,722 - Echvi_0605 0.53 -0.7
681,742 + Echvi_0605 0.55 +0.2
681,742 + Echvi_0605 0.55 +0.3
681,742 + Echvi_0605 0.55 +0.9
681,742 + Echvi_0605 0.55 +1.6
681,742 + Echvi_0605 0.55 +1.6
681,743 - Echvi_0605 0.56 +0.6
681,743 - Echvi_0605 0.56 +1.0
681,753 + Echvi_0605 0.57 -0.2
681,753 + Echvi_0605 0.57 -0.5
681,754 - Echvi_0605 0.57 -0.8
681,754 - Echvi_0605 0.57 +1.4
681,755 + Echvi_0605 0.57 +1.3
681,755 + Echvi_0605 0.57 +1.1
681,799 - Echvi_0605 0.63 +0.8
681,828 + Echvi_0605 0.67 +0.8
681,828 + Echvi_0605 0.67 -0.2
681,829 - Echvi_0605 0.67 -0.7
681,830 + Echvi_0605 0.67 +0.6
681,830 + Echvi_0605 0.67 -0.0
681,830 + Echvi_0605 0.67 -0.3
681,830 + Echvi_0605 0.67 +0.1
681,830 + Echvi_0605 0.67 +0.4
681,830 + Echvi_0605 0.67 +0.5
681,830 + Echvi_0605 0.67 +2.1
681,831 - Echvi_0605 0.68 +0.4
681,831 - Echvi_0605 0.68 +1.1
681,831 - Echvi_0605 0.68 +0.3
681,832 + Echvi_0605 0.68 +0.4
681,833 - Echvi_0605 0.68 +2.1
681,833 - Echvi_0605 0.68 +0.1
681,835 + Echvi_0605 0.68 -0.4
681,836 - Echvi_0605 0.68 +0.8
681,836 - Echvi_0605 0.68 +1.3
681,836 - Echvi_0605 0.68 +0.3
681,896 - Echvi_0605 0.77 -1.0
681,936 - Echvi_0605 0.82 -0.4
681,961 - Echvi_0605 0.85 -0.3
681,981 - Echvi_0605 0.88 +0.8
682,001 + +0.1
682,022 - +0.0
682,036 - +0.4
682,040 + +1.3
682,041 - +0.6
682,065 + -0.1
682,073 + +0.3
682,074 - +1.2
682,995 + +0.8
683,028 - -1.1

Or see this region's nucleotide sequence