Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0567

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0566 and Echvi_0567 are separated by 20 nucleotides Echvi_0566: Echvi_0566 - TonB-dependent receptor for glucose (SusC-like) (from data), at 641,300 to 644,539 _0566 Echvi_0567: Echvi_0567 - outer membrane binding protein for glucose (SusD-like) (from data), at 644,560 to 646,344 _0567 Position (kb) 644 645 646 647Strain fitness (log2 ratio) -2 -1 0 1 2 3at 643.574 kb on + strand, within Echvi_0566at 643.619 kb on + strand, within Echvi_0566at 643.619 kb on + strand, within Echvi_0566at 643.619 kb on + strand, within Echvi_0566at 643.619 kb on + strand, within Echvi_0566at 643.619 kb on + strand, within Echvi_0566at 643.620 kb on - strand, within Echvi_0566at 643.673 kb on + strand, within Echvi_0566at 643.673 kb on + strand, within Echvi_0566at 643.674 kb on - strand, within Echvi_0566at 643.674 kb on - strand, within Echvi_0566at 643.674 kb on - strand, within Echvi_0566at 643.679 kb on - strand, within Echvi_0566at 643.702 kb on + strand, within Echvi_0566at 643.721 kb on - strand, within Echvi_0566at 643.723 kb on + strand, within Echvi_0566at 643.727 kb on + strand, within Echvi_0566at 643.728 kb on - strand, within Echvi_0566at 643.728 kb on - strand, within Echvi_0566at 643.728 kb on - strand, within Echvi_0566at 643.728 kb on - strand, within Echvi_0566at 643.969 kb on + strand, within Echvi_0566at 643.970 kb on - strand, within Echvi_0566at 643.973 kb on + strand, within Echvi_0566at 644.106 kb on - strand, within Echvi_0566at 644.159 kb on + strand, within Echvi_0566at 644.239 kb on + strandat 644.239 kb on + strandat 644.239 kb on + strandat 644.240 kb on - strandat 644.240 kb on - strandat 644.278 kb on - strandat 644.288 kb on + strandat 644.468 kb on - strandat 644.513 kb on - strandat 644.537 kb on + strandat 644.559 kb on + strandat 644.560 kb on - strandat 644.574 kb on + strandat 644.586 kb on + strandat 644.600 kb on + strandat 644.806 kb on + strand, within Echvi_0567at 644.807 kb on - strand, within Echvi_0567at 644.816 kb on + strand, within Echvi_0567at 644.817 kb on - strand, within Echvi_0567at 644.817 kb on - strand, within Echvi_0567at 644.887 kb on + strand, within Echvi_0567at 645.236 kb on - strand, within Echvi_0567at 645.250 kb on + strand, within Echvi_0567at 645.251 kb on - strand, within Echvi_0567at 645.251 kb on - strand, within Echvi_0567at 645.283 kb on - strand, within Echvi_0567at 645.348 kb on + strand, within Echvi_0567at 645.398 kb on + strand, within Echvi_0567at 645.581 kb on - strand, within Echvi_0567at 645.640 kb on + strand, within Echvi_0567at 645.761 kb on - strand, within Echvi_0567at 645.781 kb on + strand, within Echvi_0567at 645.806 kb on - strand, within Echvi_0567at 645.843 kb on + strand, within Echvi_0567at 645.843 kb on + strand, within Echvi_0567at 645.974 kb on - strand, within Echvi_0567at 645.974 kb on - strand, within Echvi_0567at 645.989 kb on + strand, within Echvi_0567at 645.989 kb on + strand, within Echvi_0567at 645.990 kb on - strand, within Echvi_0567at 646.039 kb on + strand, within Echvi_0567at 646.040 kb on - strand, within Echvi_0567at 646.054 kb on + strand, within Echvi_0567at 646.055 kb on - strand, within Echvi_0567at 646.102 kb on + strand, within Echvi_0567at 646.158 kb on - strand, within Echvi_0567at 646.158 kb on - strand, within Echvi_0567at 646.184 kb on + strandat 646.261 kb on + strandat 646.261 kb on + strandat 646.261 kb on + strandat 646.261 kb on + strandat 646.261 kb on + strandat 646.262 kb on - strandat 646.262 kb on - strandat 646.264 kb on + strandat 646.265 kb on - strandat 646.337 kb on - strandat 646.338 kb on + strandat 646.339 kb on - strandat 646.342 kb on + strandat 646.342 kb on + strandat 646.343 kb on - strandat 646.353 kb on - strandat 646.421 kb on - strandat 646.421 kb on - strandat 646.427 kb on - strandat 646.460 kb on - strandat 646.460 kb on - strandat 646.463 kb on - strandat 646.517 kb on + strandat 646.517 kb on + strandat 646.539 kb on + strandat 646.539 kb on + strandat 646.636 kb on + strandat 646.641 kb on - strandat 646.641 kb on - strandat 646.687 kb on + strandat 646.697 kb on + strandat 646.707 kb on - strandat 646.735 kb on + strandat 646.735 kb on + strandat 646.789 kb on + strandat 646.789 kb on + strandat 646.790 kb on - strandat 646.790 kb on - strandat 647.030 kb on - strandat 647.030 kb on - strandat 647.332 kb on + strandat 647.332 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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643,574 + Echvi_0566 0.70 +0.1
643,619 + Echvi_0566 0.72 -0.5
643,619 + Echvi_0566 0.72 -0.2
643,619 + Echvi_0566 0.72 -1.0
643,619 + Echvi_0566 0.72 -1.9
643,619 + Echvi_0566 0.72 +0.7
643,620 - Echvi_0566 0.72 +0.2
643,673 + Echvi_0566 0.73 +0.5
643,673 + Echvi_0566 0.73 +1.6
643,674 - Echvi_0566 0.73 -0.2
643,674 - Echvi_0566 0.73 +0.3
643,674 - Echvi_0566 0.73 -1.7
643,679 - Echvi_0566 0.73 +2.1
643,702 + Echvi_0566 0.74 +0.6
643,721 - Echvi_0566 0.75 +3.7
643,723 + Echvi_0566 0.75 +0.1
643,727 + Echvi_0566 0.75 +1.1
643,728 - Echvi_0566 0.75 +0.1
643,728 - Echvi_0566 0.75 -0.3
643,728 - Echvi_0566 0.75 -0.9
643,728 - Echvi_0566 0.75 +0.4
643,969 + Echvi_0566 0.82 +0.2
643,970 - Echvi_0566 0.82 +0.5
643,973 + Echvi_0566 0.82 +0.3
644,106 - Echvi_0566 0.87 -1.1
644,159 + Echvi_0566 0.88 +0.9
644,239 + +0.6
644,239 + -0.3
644,239 + +0.0
644,240 - +0.8
644,240 - -1.5
644,278 - +0.5
644,288 + -0.7
644,468 - +1.7
644,513 - +1.1
644,537 + -1.1
644,559 + -0.3
644,560 - -0.5
644,574 + -0.0
644,586 + +0.8
644,600 + +0.8
644,806 + Echvi_0567 0.14 -0.1
644,807 - Echvi_0567 0.14 -0.1
644,816 + Echvi_0567 0.14 +1.5
644,817 - Echvi_0567 0.14 -0.9
644,817 - Echvi_0567 0.14 +0.9
644,887 + Echvi_0567 0.18 -0.3
645,236 - Echvi_0567 0.38 +1.5
645,250 + Echvi_0567 0.39 -0.6
645,251 - Echvi_0567 0.39 +0.5
645,251 - Echvi_0567 0.39 -0.1
645,283 - Echvi_0567 0.41 +0.4
645,348 + Echvi_0567 0.44 +0.8
645,398 + Echvi_0567 0.47 -1.5
645,581 - Echvi_0567 0.57 -0.4
645,640 + Echvi_0567 0.61 +1.1
645,761 - Echvi_0567 0.67 +2.2
645,781 + Echvi_0567 0.68 +0.1
645,806 - Echvi_0567 0.70 +0.9
645,843 + Echvi_0567 0.72 -0.5
645,843 + Echvi_0567 0.72 -0.1
645,974 - Echvi_0567 0.79 +0.2
645,974 - Echvi_0567 0.79 +1.2
645,989 + Echvi_0567 0.80 -1.1
645,989 + Echvi_0567 0.80 +1.1
645,990 - Echvi_0567 0.80 -0.0
646,039 + Echvi_0567 0.83 +2.1
646,040 - Echvi_0567 0.83 +0.3
646,054 + Echvi_0567 0.84 -0.0
646,055 - Echvi_0567 0.84 +3.1
646,102 + Echvi_0567 0.86 -2.1
646,158 - Echvi_0567 0.90 +0.5
646,158 - Echvi_0567 0.90 +0.9
646,184 + -0.4
646,261 + -0.0
646,261 + +0.9
646,261 + -1.8
646,261 + +0.6
646,261 + +0.7
646,262 - -0.3
646,262 - +0.8
646,264 + +1.3
646,265 - +0.7
646,337 - -0.7
646,338 + +1.1
646,339 - +1.7
646,342 + +1.1
646,342 + +1.1
646,343 - -0.0
646,353 - +1.1
646,421 - +0.7
646,421 - -0.7
646,427 - -0.7
646,460 - -1.2
646,460 - +1.6
646,463 - +0.6
646,517 + +0.3
646,517 + +0.1
646,539 + -1.1
646,539 + -0.8
646,636 + -1.5
646,641 - +0.7
646,641 - +0.7
646,687 + +0.3
646,697 + +0.6
646,707 - +0.2
646,735 + +0.6
646,735 + -1.3
646,789 + -1.4
646,789 + -1.1
646,790 - +0.1
646,790 - +1.1
647,030 - -0.4
647,030 - +1.6
647,332 + -1.0
647,332 + +0.5

Or see this region's nucleotide sequence