Experiment: m.b. Carbenicillin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0565 and Echvi_0566 are separated by 590 nucleotides Echvi_0566 and Echvi_0567 are separated by 20 nucleotides
Echvi_0565: Echvi_0565 - Predicted dehydrogenases and related proteins, at 639,243 to 640,709
_0565
Echvi_0566: Echvi_0566 - TonB-dependent receptor for glucose (SusC-like) <small>(from data)</small>, at 641,300 to 644,539
_0566
Echvi_0567: Echvi_0567 - outer membrane binding protein for glucose (SusD-like) <small>(from data)</small>, at 644,560 to 646,344
_0567
Position (kb) 641
642
643
644
645 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 640.300 kb on + strand, within Echvi_0565 at 640.300 kb on + strand, within Echvi_0565 at 640.300 kb on + strand, within Echvi_0565 at 640.301 kb on - strand, within Echvi_0565 at 640.301 kb on - strand, within Echvi_0565 at 640.302 kb on + strand, within Echvi_0565 at 640.302 kb on + strand, within Echvi_0565 at 640.302 kb on + strand, within Echvi_0565 at 640.302 kb on + strand, within Echvi_0565 at 640.302 kb on + strand, within Echvi_0565 at 640.302 kb on + strand, within Echvi_0565 at 640.303 kb on - strand, within Echvi_0565 at 640.303 kb on - strand, within Echvi_0565 at 640.303 kb on - strand, within Echvi_0565 at 640.303 kb on - strand, within Echvi_0565 at 640.303 kb on - strand, within Echvi_0565 at 640.347 kb on + strand, within Echvi_0565 at 640.348 kb on - strand, within Echvi_0565 at 640.348 kb on - strand, within Echvi_0565 at 640.348 kb on - strand, within Echvi_0565 at 640.348 kb on - strand, within Echvi_0565 at 640.348 kb on - strand, within Echvi_0565 at 640.420 kb on + strand, within Echvi_0565 at 640.420 kb on + strand, within Echvi_0565 at 640.421 kb on - strand, within Echvi_0565 at 640.477 kb on - strand, within Echvi_0565 at 640.714 kb on + strand at 640.716 kb on + strand at 640.717 kb on - strand at 640.910 kb on + strand at 640.928 kb on + strand at 640.932 kb on - strand at 640.951 kb on + strand at 641.046 kb on + strand at 641.054 kb on + strand at 641.055 kb on - strand at 641.090 kb on - strand at 641.120 kb on + strand at 641.120 kb on + strand at 641.120 kb on + strand at 641.120 kb on + strand at 641.148 kb on - strand at 641.172 kb on - strand at 641.177 kb on + strand at 641.198 kb on + strand at 641.198 kb on + strand at 641.204 kb on - strand at 641.204 kb on - strand at 641.204 kb on - strand at 641.204 kb on - strand at 641.225 kb on + strand at 641.245 kb on + strand at 641.245 kb on + strand at 641.277 kb on + strand at 641.278 kb on - strand at 641.284 kb on - strand at 641.287 kb on + strand at 641.293 kb on + strand at 641.350 kb on + strand at 641.398 kb on - strand at 641.455 kb on + strand at 641.455 kb on + strand at 641.455 kb on + strand at 641.456 kb on - strand at 641.456 kb on - strand at 641.508 kb on - strand at 641.520 kb on + strand at 641.521 kb on - strand at 641.521 kb on - strand at 641.533 kb on + strand at 641.558 kb on + strand at 641.599 kb on - strand at 641.830 kb on - strand, within Echvi_0566 at 641.849 kb on - strand, within Echvi_0566 at 641.849 kb on - strand, within Echvi_0566 at 641.914 kb on - strand, within Echvi_0566 at 641.914 kb on - strand, within Echvi_0566 at 641.954 kb on - strand, within Echvi_0566 at 642.029 kb on + strand, within Echvi_0566 at 642.029 kb on + strand, within Echvi_0566 at 642.030 kb on - strand, within Echvi_0566 at 642.030 kb on - strand, within Echvi_0566 at 642.030 kb on - strand, within Echvi_0566 at 642.038 kb on + strand, within Echvi_0566 at 642.038 kb on + strand, within Echvi_0566 at 642.039 kb on - strand, within Echvi_0566 at 642.039 kb on - strand, within Echvi_0566 at 642.197 kb on + strand, within Echvi_0566 at 642.197 kb on + strand, within Echvi_0566 at 642.197 kb on + strand, within Echvi_0566 at 642.197 kb on + strand, within Echvi_0566 at 642.198 kb on - strand, within Echvi_0566 at 642.199 kb on + strand, within Echvi_0566 at 642.210 kb on + strand, within Echvi_0566 at 642.239 kb on + strand, within Echvi_0566 at 642.240 kb on - strand, within Echvi_0566 at 642.240 kb on - strand, within Echvi_0566 at 642.241 kb on + strand, within Echvi_0566 at 642.242 kb on - strand, within Echvi_0566 at 642.254 kb on + strand, within Echvi_0566 at 642.255 kb on - strand, within Echvi_0566 at 642.255 kb on - strand, within Echvi_0566 at 642.401 kb on + strand, within Echvi_0566 at 642.448 kb on + strand, within Echvi_0566 at 642.449 kb on - strand, within Echvi_0566 at 642.449 kb on - strand, within Echvi_0566 at 642.449 kb on - strand, within Echvi_0566 at 642.488 kb on + strand, within Echvi_0566 at 642.488 kb on + strand, within Echvi_0566 at 642.489 kb on - strand, within Echvi_0566 at 642.490 kb on + strand, within Echvi_0566 at 642.511 kb on + strand, within Echvi_0566 at 642.530 kb on + strand, within Echvi_0566 at 642.530 kb on + strand, within Echvi_0566 at 642.673 kb on + strand, within Echvi_0566 at 642.745 kb on - strand, within Echvi_0566 at 642.803 kb on + strand, within Echvi_0566 at 642.804 kb on - strand, within Echvi_0566 at 642.814 kb on + strand, within Echvi_0566 at 642.814 kb on + strand, within Echvi_0566 at 642.815 kb on - strand, within Echvi_0566 at 642.815 kb on - strand, within Echvi_0566 at 642.875 kb on + strand, within Echvi_0566 at 642.875 kb on + strand, within Echvi_0566 at 642.875 kb on + strand, within Echvi_0566 at 642.901 kb on + strand, within Echvi_0566 at 642.901 kb on + strand, within Echvi_0566 at 642.906 kb on - strand, within Echvi_0566 at 642.925 kb on + strand, within Echvi_0566 at 642.930 kb on - strand, within Echvi_0566 at 643.020 kb on - strand, within Echvi_0566 at 643.102 kb on + strand, within Echvi_0566 at 643.102 kb on + strand, within Echvi_0566 at 643.139 kb on + strand, within Echvi_0566 at 643.145 kb on + strand, within Echvi_0566 at 643.145 kb on + strand, within Echvi_0566 at 643.145 kb on + strand, within Echvi_0566 at 643.145 kb on + strand, within Echvi_0566 at 643.146 kb on - strand, within Echvi_0566 at 643.146 kb on - strand, within Echvi_0566 at 643.146 kb on - strand, within Echvi_0566 at 643.153 kb on + strand, within Echvi_0566 at 643.153 kb on + strand, within Echvi_0566 at 643.157 kb on + strand, within Echvi_0566 at 643.157 kb on + strand, within Echvi_0566 at 643.158 kb on - strand, within Echvi_0566 at 643.158 kb on - strand, within Echvi_0566 at 643.214 kb on + strand, within Echvi_0566 at 643.267 kb on + strand, within Echvi_0566 at 643.302 kb on + strand, within Echvi_0566 at 643.359 kb on - strand, within Echvi_0566 at 643.364 kb on - strand, within Echvi_0566 at 643.364 kb on - strand, within Echvi_0566 at 643.367 kb on + strand, within Echvi_0566 at 643.367 kb on + strand, within Echvi_0566 at 643.368 kb on - strand, within Echvi_0566 at 643.368 kb on - strand, within Echvi_0566 at 643.391 kb on + strand, within Echvi_0566 at 643.392 kb on - strand, within Echvi_0566 at 643.399 kb on + strand, within Echvi_0566 at 643.423 kb on - strand, within Echvi_0566 at 643.484 kb on - strand, within Echvi_0566 at 643.544 kb on + strand, within Echvi_0566 at 643.544 kb on + strand, within Echvi_0566 at 643.544 kb on + strand, within Echvi_0566 at 643.547 kb on + strand, within Echvi_0566 at 643.548 kb on - strand, within Echvi_0566 at 643.548 kb on - strand, within Echvi_0566 at 643.548 kb on - strand, within Echvi_0566 at 643.548 kb on - strand, within Echvi_0566 at 643.549 kb on + strand, within Echvi_0566 at 643.552 kb on + strand, within Echvi_0566 at 643.574 kb on + strand, within Echvi_0566 at 643.619 kb on + strand, within Echvi_0566 at 643.619 kb on + strand, within Echvi_0566 at 643.619 kb on + strand, within Echvi_0566 at 643.619 kb on + strand, within Echvi_0566 at 643.619 kb on + strand, within Echvi_0566 at 643.620 kb on - strand, within Echvi_0566 at 643.673 kb on + strand, within Echvi_0566 at 643.673 kb on + strand, within Echvi_0566 at 643.674 kb on - strand, within Echvi_0566 at 643.674 kb on - strand, within Echvi_0566 at 643.674 kb on - strand, within Echvi_0566 at 643.679 kb on - strand, within Echvi_0566 at 643.702 kb on + strand, within Echvi_0566 at 643.721 kb on - strand, within Echvi_0566 at 643.723 kb on + strand, within Echvi_0566 at 643.727 kb on + strand, within Echvi_0566 at 643.728 kb on - strand, within Echvi_0566 at 643.728 kb on - strand, within Echvi_0566 at 643.728 kb on - strand, within Echvi_0566 at 643.728 kb on - strand, within Echvi_0566 at 643.969 kb on + strand, within Echvi_0566 at 643.970 kb on - strand, within Echvi_0566 at 643.973 kb on + strand, within Echvi_0566 at 644.106 kb on - strand, within Echvi_0566 at 644.159 kb on + strand, within Echvi_0566 at 644.239 kb on + strand at 644.239 kb on + strand at 644.239 kb on + strand at 644.240 kb on - strand at 644.240 kb on - strand at 644.278 kb on - strand at 644.288 kb on + strand at 644.468 kb on - strand at 644.513 kb on - strand at 644.537 kb on + strand at 644.559 kb on + strand at 644.560 kb on - strand at 644.574 kb on + strand at 644.586 kb on + strand at 644.600 kb on + strand at 644.806 kb on + strand, within Echvi_0567 at 644.807 kb on - strand, within Echvi_0567 at 644.816 kb on + strand, within Echvi_0567 at 644.817 kb on - strand, within Echvi_0567 at 644.817 kb on - strand, within Echvi_0567 at 644.887 kb on + strand, within Echvi_0567 at 645.236 kb on - strand, within Echvi_0567 at 645.250 kb on + strand, within Echvi_0567 at 645.251 kb on - strand, within Echvi_0567 at 645.251 kb on - strand, within Echvi_0567 at 645.283 kb on - strand, within Echvi_0567 at 645.348 kb on + strand, within Echvi_0567 at 645.398 kb on + strand, within Echvi_0567
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml remove 640,300 + Echvi_0565 0.72 -0.3 640,300 + Echvi_0565 0.72 +0.3 640,300 + Echvi_0565 0.72 +0.3 640,301 - Echvi_0565 0.72 +1.6 640,301 - Echvi_0565 0.72 -0.0 640,302 + Echvi_0565 0.72 -0.1 640,302 + Echvi_0565 0.72 +0.4 640,302 + Echvi_0565 0.72 +0.6 640,302 + Echvi_0565 0.72 +1.9 640,302 + Echvi_0565 0.72 +1.4 640,302 + Echvi_0565 0.72 -0.0 640,303 - Echvi_0565 0.72 +0.2 640,303 - Echvi_0565 0.72 -2.0 640,303 - Echvi_0565 0.72 +0.3 640,303 - Echvi_0565 0.72 +0.7 640,303 - Echvi_0565 0.72 -0.1 640,347 + Echvi_0565 0.75 +1.5 640,348 - Echvi_0565 0.75 +1.2 640,348 - Echvi_0565 0.75 +0.7 640,348 - Echvi_0565 0.75 +0.6 640,348 - Echvi_0565 0.75 +0.1 640,348 - Echvi_0565 0.75 +1.0 640,420 + Echvi_0565 0.80 -0.1 640,420 + Echvi_0565 0.80 +0.4 640,421 - Echvi_0565 0.80 +1.4 640,477 - Echvi_0565 0.84 -0.6 640,714 + +4.5 640,716 + +4.2 640,717 - +0.5 640,910 + +4.6 640,928 + +4.7 640,932 - +0.6 640,951 + +4.1 641,046 + +5.1 641,054 + +5.5 641,055 - +0.1 641,090 - +0.8 641,120 + +4.4 641,120 + +4.8 641,120 + +4.7 641,120 + +4.7 641,148 - +0.5 641,172 - -0.2 641,177 + +5.1 641,198 + +4.4 641,198 + +3.5 641,204 - +1.1 641,204 - -1.2 641,204 - -0.4 641,204 - +0.1 641,225 + +4.6 641,245 + +6.0 641,245 + +4.0 641,277 + +3.1 641,278 - +0.0 641,284 - -1.7 641,287 + +1.3 641,293 + +1.7 641,350 + +3.1 641,398 - +0.2 641,455 + -0.1 641,455 + +0.1 641,455 + +0.1 641,456 - +2.1 641,456 - -0.6 641,508 - -1.0 641,520 + +0.3 641,521 - -0.2 641,521 - +0.5 641,533 + -3.1 641,558 + -0.5 641,599 - -0.4 641,830 - Echvi_0566 0.16 +0.8 641,849 - Echvi_0566 0.17 +0.5 641,849 - Echvi_0566 0.17 -0.5 641,914 - Echvi_0566 0.19 -0.5 641,914 - Echvi_0566 0.19 +1.2 641,954 - Echvi_0566 0.20 -1.7 642,029 + Echvi_0566 0.23 -0.6 642,029 + Echvi_0566 0.23 -0.9 642,030 - Echvi_0566 0.23 -0.3 642,030 - Echvi_0566 0.23 +1.1 642,030 - Echvi_0566 0.23 +0.1 642,038 + Echvi_0566 0.23 +2.1 642,038 + Echvi_0566 0.23 -0.7 642,039 - Echvi_0566 0.23 -0.2 642,039 - Echvi_0566 0.23 -1.6 642,197 + Echvi_0566 0.28 -0.7 642,197 + Echvi_0566 0.28 -0.6 642,197 + Echvi_0566 0.28 -1.7 642,197 + Echvi_0566 0.28 +1.4 642,198 - Echvi_0566 0.28 -0.9 642,199 + Echvi_0566 0.28 -0.0 642,210 + Echvi_0566 0.28 -1.5 642,239 + Echvi_0566 0.29 +0.2 642,240 - Echvi_0566 0.29 -0.9 642,240 - Echvi_0566 0.29 +0.6 642,241 + Echvi_0566 0.29 -0.5 642,242 - Echvi_0566 0.29 +0.1 642,254 + Echvi_0566 0.29 -0.9 642,255 - Echvi_0566 0.29 +1.1 642,255 - Echvi_0566 0.29 +0.0 642,401 + Echvi_0566 0.34 +0.1 642,448 + Echvi_0566 0.35 +1.7 642,449 - Echvi_0566 0.35 -0.5 642,449 - Echvi_0566 0.35 -0.8 642,449 - Echvi_0566 0.35 -1.7 642,488 + Echvi_0566 0.37 -1.6 642,488 + Echvi_0566 0.37 -1.7 642,489 - Echvi_0566 0.37 +0.7 642,490 + Echvi_0566 0.37 +0.7 642,511 + Echvi_0566 0.37 +0.5 642,530 + Echvi_0566 0.38 +1.9 642,530 + Echvi_0566 0.38 -0.9 642,673 + Echvi_0566 0.42 -0.2 642,745 - Echvi_0566 0.45 -0.2 642,803 + Echvi_0566 0.46 -1.6 642,804 - Echvi_0566 0.46 -1.1 642,814 + Echvi_0566 0.47 -0.9 642,814 + Echvi_0566 0.47 -0.9 642,815 - Echvi_0566 0.47 -0.5 642,815 - Echvi_0566 0.47 -0.3 642,875 + Echvi_0566 0.49 +0.4 642,875 + Echvi_0566 0.49 -1.0 642,875 + Echvi_0566 0.49 -2.1 642,901 + Echvi_0566 0.49 -0.4 642,901 + Echvi_0566 0.49 +0.3 642,906 - Echvi_0566 0.50 +0.1 642,925 + Echvi_0566 0.50 -0.2 642,930 - Echvi_0566 0.50 -0.8 643,020 - Echvi_0566 0.53 +1.8 643,102 + Echvi_0566 0.56 +0.5 643,102 + Echvi_0566 0.56 +0.7 643,139 + Echvi_0566 0.57 -0.5 643,145 + Echvi_0566 0.57 +0.4 643,145 + Echvi_0566 0.57 -0.6 643,145 + Echvi_0566 0.57 -1.6 643,145 + Echvi_0566 0.57 -0.3 643,146 - Echvi_0566 0.57 -1.6 643,146 - Echvi_0566 0.57 -1.0 643,146 - Echvi_0566 0.57 +2.1 643,153 + Echvi_0566 0.57 -0.9 643,153 + Echvi_0566 0.57 +1.4 643,157 + Echvi_0566 0.57 +0.5 643,157 + Echvi_0566 0.57 -0.4 643,158 - Echvi_0566 0.57 -0.9 643,158 - Echvi_0566 0.57 +0.5 643,214 + Echvi_0566 0.59 -1.5 643,267 + Echvi_0566 0.61 +0.1 643,302 + Echvi_0566 0.62 +2.7 643,359 - Echvi_0566 0.64 +1.1 643,364 - Echvi_0566 0.64 -0.9 643,364 - Echvi_0566 0.64 -1.4 643,367 + Echvi_0566 0.64 -1.0 643,367 + Echvi_0566 0.64 +1.1 643,368 - Echvi_0566 0.64 -0.5 643,368 - Echvi_0566 0.64 -0.2 643,391 + Echvi_0566 0.65 -1.1 643,392 - Echvi_0566 0.65 -0.8 643,399 + Echvi_0566 0.65 -0.4 643,423 - Echvi_0566 0.66 +0.4 643,484 - Echvi_0566 0.67 +1.3 643,544 + Echvi_0566 0.69 +2.8 643,544 + Echvi_0566 0.69 -0.3 643,544 + Echvi_0566 0.69 +0.1 643,547 + Echvi_0566 0.69 +2.3 643,548 - Echvi_0566 0.69 +0.5 643,548 - Echvi_0566 0.69 -0.2 643,548 - Echvi_0566 0.69 +1.3 643,548 - Echvi_0566 0.69 -0.9 643,549 + Echvi_0566 0.69 -1.2 643,552 + Echvi_0566 0.70 +0.5 643,574 + Echvi_0566 0.70 +0.1 643,619 + Echvi_0566 0.72 -0.5 643,619 + Echvi_0566 0.72 -0.2 643,619 + Echvi_0566 0.72 -1.0 643,619 + Echvi_0566 0.72 -1.9 643,619 + Echvi_0566 0.72 +0.7 643,620 - Echvi_0566 0.72 +0.2 643,673 + Echvi_0566 0.73 +0.5 643,673 + Echvi_0566 0.73 +1.6 643,674 - Echvi_0566 0.73 -0.2 643,674 - Echvi_0566 0.73 +0.3 643,674 - Echvi_0566 0.73 -1.7 643,679 - Echvi_0566 0.73 +2.1 643,702 + Echvi_0566 0.74 +0.6 643,721 - Echvi_0566 0.75 +3.7 643,723 + Echvi_0566 0.75 +0.1 643,727 + Echvi_0566 0.75 +1.1 643,728 - Echvi_0566 0.75 +0.1 643,728 - Echvi_0566 0.75 -0.3 643,728 - Echvi_0566 0.75 -0.9 643,728 - Echvi_0566 0.75 +0.4 643,969 + Echvi_0566 0.82 +0.2 643,970 - Echvi_0566 0.82 +0.5 643,973 + Echvi_0566 0.82 +0.3 644,106 - Echvi_0566 0.87 -1.1 644,159 + Echvi_0566 0.88 +0.9 644,239 + +0.6 644,239 + -0.3 644,239 + +0.0 644,240 - +0.8 644,240 - -1.5 644,278 - +0.5 644,288 + -0.7 644,468 - +1.7 644,513 - +1.1 644,537 + -1.1 644,559 + -0.3 644,560 - -0.5 644,574 + -0.0 644,586 + +0.8 644,600 + +0.8 644,806 + Echvi_0567 0.14 -0.1 644,807 - Echvi_0567 0.14 -0.1 644,816 + Echvi_0567 0.14 +1.5 644,817 - Echvi_0567 0.14 -0.9 644,817 - Echvi_0567 0.14 +0.9 644,887 + Echvi_0567 0.18 -0.3 645,236 - Echvi_0567 0.38 +1.5 645,250 + Echvi_0567 0.39 -0.6 645,251 - Echvi_0567 0.39 +0.5 645,251 - Echvi_0567 0.39 -0.1 645,283 - Echvi_0567 0.41 +0.4 645,348 + Echvi_0567 0.44 +0.8 645,398 + Echvi_0567 0.47 -1.5
Or see this region's nucleotide sequence