Experiment: m.b. Carbenicillin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0544 and Echvi_0545 are separated by 147 nucleotides Echvi_0545 and Echvi_0546 are separated by 73 nucleotides Echvi_0546 and Echvi_0547 are separated by 30 nucleotides
Echvi_0544: Echvi_0544 - DNA-binding transcriptional activator of the SARP family, at 608,381 to 610,894
_0544
Echvi_0545: Echvi_0545 - hypothetical protein, at 611,042 to 613,243
_0545
Echvi_0546: Echvi_0546 - hypothetical protein, at 613,317 to 614,129
_0546
Echvi_0547: Echvi_0547 - SusD family., at 614,160 to 616,307
_0547
Position (kb) 611
612
613
614 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 610.053 kb on + strand, within Echvi_0544 at 610.054 kb on - strand, within Echvi_0544 at 610.078 kb on - strand, within Echvi_0544 at 610.092 kb on - strand, within Echvi_0544 at 610.092 kb on - strand, within Echvi_0544 at 610.092 kb on - strand, within Echvi_0544 at 610.126 kb on + strand, within Echvi_0544 at 610.126 kb on + strand, within Echvi_0544 at 610.159 kb on + strand, within Echvi_0544 at 610.203 kb on + strand, within Echvi_0544 at 610.204 kb on - strand, within Echvi_0544 at 610.250 kb on + strand, within Echvi_0544 at 610.250 kb on + strand, within Echvi_0544 at 610.250 kb on + strand, within Echvi_0544 at 610.250 kb on + strand, within Echvi_0544 at 610.250 kb on + strand, within Echvi_0544 at 610.250 kb on + strand, within Echvi_0544 at 610.250 kb on + strand, within Echvi_0544 at 610.250 kb on + strand, within Echvi_0544 at 610.250 kb on + strand, within Echvi_0544 at 610.251 kb on - strand, within Echvi_0544 at 610.251 kb on - strand, within Echvi_0544 at 610.251 kb on - strand, within Echvi_0544 at 610.251 kb on - strand, within Echvi_0544 at 610.251 kb on - strand, within Echvi_0544 at 610.251 kb on - strand, within Echvi_0544 at 610.251 kb on - strand, within Echvi_0544 at 610.270 kb on + strand, within Echvi_0544 at 610.271 kb on - strand, within Echvi_0544 at 610.357 kb on + strand, within Echvi_0544 at 610.357 kb on + strand, within Echvi_0544 at 610.358 kb on - strand, within Echvi_0544 at 610.358 kb on - strand, within Echvi_0544 at 610.392 kb on + strand, within Echvi_0544 at 610.402 kb on + strand, within Echvi_0544 at 610.402 kb on + strand, within Echvi_0544 at 610.471 kb on + strand, within Echvi_0544 at 610.472 kb on - strand, within Echvi_0544 at 610.491 kb on - strand, within Echvi_0544 at 610.491 kb on - strand, within Echvi_0544 at 610.499 kb on + strand, within Echvi_0544 at 610.499 kb on + strand, within Echvi_0544 at 610.519 kb on + strand, within Echvi_0544 at 610.519 kb on + strand, within Echvi_0544 at 610.520 kb on - strand, within Echvi_0544 at 610.526 kb on - strand, within Echvi_0544 at 610.531 kb on + strand, within Echvi_0544 at 610.547 kb on - strand, within Echvi_0544 at 610.547 kb on - strand, within Echvi_0544 at 610.588 kb on - strand, within Echvi_0544 at 610.589 kb on + strand, within Echvi_0544 at 610.590 kb on - strand, within Echvi_0544 at 610.617 kb on + strand, within Echvi_0544 at 610.618 kb on - strand, within Echvi_0544 at 610.662 kb on + strand at 610.696 kb on + strand at 610.697 kb on - strand at 610.700 kb on - strand at 610.703 kb on - strand at 610.743 kb on + strand at 610.744 kb on - strand at 610.763 kb on + strand at 610.771 kb on + strand at 610.771 kb on + strand at 610.793 kb on - strand at 610.797 kb on + strand at 610.797 kb on + strand at 610.797 kb on + strand at 610.798 kb on - strand at 610.798 kb on - strand at 610.798 kb on - strand at 610.798 kb on - strand at 610.798 kb on - strand at 610.798 kb on - strand at 610.838 kb on + strand at 610.892 kb on + strand at 610.904 kb on + strand at 610.914 kb on - strand at 610.939 kb on + strand at 610.940 kb on - strand at 610.940 kb on - strand at 610.941 kb on + strand at 610.942 kb on - strand at 610.942 kb on - strand at 610.962 kb on - strand at 610.970 kb on - strand at 611.159 kb on - strand at 611.269 kb on - strand, within Echvi_0545 at 611.269 kb on - strand, within Echvi_0545 at 611.269 kb on - strand, within Echvi_0545 at 611.269 kb on - strand, within Echvi_0545 at 611.332 kb on - strand, within Echvi_0545 at 611.396 kb on + strand, within Echvi_0545 at 611.423 kb on - strand, within Echvi_0545 at 611.423 kb on - strand, within Echvi_0545 at 611.423 kb on - strand, within Echvi_0545 at 611.424 kb on + strand, within Echvi_0545 at 611.425 kb on - strand, within Echvi_0545 at 611.425 kb on - strand, within Echvi_0545 at 611.470 kb on - strand, within Echvi_0545 at 611.470 kb on - strand, within Echvi_0545 at 611.470 kb on - strand, within Echvi_0545 at 611.500 kb on + strand, within Echvi_0545 at 611.505 kb on - strand, within Echvi_0545 at 611.619 kb on - strand, within Echvi_0545 at 611.684 kb on + strand, within Echvi_0545 at 611.710 kb on + strand, within Echvi_0545 at 611.711 kb on - strand, within Echvi_0545 at 611.713 kb on + strand, within Echvi_0545 at 611.714 kb on - strand, within Echvi_0545 at 611.714 kb on - strand, within Echvi_0545 at 611.714 kb on - strand, within Echvi_0545 at 611.758 kb on + strand, within Echvi_0545 at 611.772 kb on + strand, within Echvi_0545 at 611.989 kb on - strand, within Echvi_0545 at 612.067 kb on + strand, within Echvi_0545 at 612.068 kb on - strand, within Echvi_0545 at 612.086 kb on - strand, within Echvi_0545 at 612.086 kb on - strand, within Echvi_0545 at 612.157 kb on + strand, within Echvi_0545 at 612.158 kb on - strand, within Echvi_0545 at 612.186 kb on + strand, within Echvi_0545 at 612.186 kb on + strand, within Echvi_0545 at 612.187 kb on - strand, within Echvi_0545 at 612.187 kb on - strand, within Echvi_0545 at 612.217 kb on - strand, within Echvi_0545 at 612.276 kb on + strand, within Echvi_0545 at 612.276 kb on + strand, within Echvi_0545 at 612.415 kb on + strand, within Echvi_0545 at 612.415 kb on + strand, within Echvi_0545 at 612.415 kb on + strand, within Echvi_0545 at 612.415 kb on + strand, within Echvi_0545 at 612.416 kb on - strand, within Echvi_0545 at 612.417 kb on + strand, within Echvi_0545 at 612.420 kb on + strand, within Echvi_0545 at 612.420 kb on + strand, within Echvi_0545 at 612.460 kb on + strand, within Echvi_0545 at 612.460 kb on + strand, within Echvi_0545 at 612.461 kb on - strand, within Echvi_0545 at 612.462 kb on + strand, within Echvi_0545 at 612.494 kb on - strand, within Echvi_0545 at 612.525 kb on + strand, within Echvi_0545 at 612.548 kb on + strand, within Echvi_0545 at 612.553 kb on - strand, within Echvi_0545 at 612.569 kb on - strand, within Echvi_0545 at 612.569 kb on - strand, within Echvi_0545 at 612.569 kb on - strand, within Echvi_0545 at 612.624 kb on + strand, within Echvi_0545 at 612.625 kb on - strand, within Echvi_0545 at 612.625 kb on - strand, within Echvi_0545 at 612.627 kb on + strand, within Echvi_0545 at 612.628 kb on - strand, within Echvi_0545 at 612.636 kb on + strand, within Echvi_0545 at 612.637 kb on - strand, within Echvi_0545 at 612.637 kb on - strand, within Echvi_0545 at 612.647 kb on - strand, within Echvi_0545 at 612.658 kb on - strand, within Echvi_0545 at 612.658 kb on - strand, within Echvi_0545 at 612.662 kb on - strand, within Echvi_0545 at 612.705 kb on + strand, within Echvi_0545 at 612.736 kb on + strand, within Echvi_0545 at 612.736 kb on + strand, within Echvi_0545 at 612.737 kb on - strand, within Echvi_0545 at 612.737 kb on - strand, within Echvi_0545 at 612.737 kb on - strand, within Echvi_0545 at 612.737 kb on - strand, within Echvi_0545 at 612.739 kb on - strand, within Echvi_0545 at 612.775 kb on - strand, within Echvi_0545 at 612.792 kb on - strand, within Echvi_0545 at 612.858 kb on + strand, within Echvi_0545 at 612.858 kb on + strand, within Echvi_0545 at 612.859 kb on - strand, within Echvi_0545 at 612.859 kb on - strand, within Echvi_0545 at 612.868 kb on + strand, within Echvi_0545 at 612.869 kb on - strand, within Echvi_0545 at 612.869 kb on - strand, within Echvi_0545 at 612.887 kb on - strand, within Echvi_0545 at 613.043 kb on - strand at 613.043 kb on - strand at 613.190 kb on - strand at 613.221 kb on + strand at 613.222 kb on - strand at 613.227 kb on - strand at 613.304 kb on - strand at 613.314 kb on + strand at 613.315 kb on - strand at 613.348 kb on + strand at 613.349 kb on - strand at 613.391 kb on + strand at 613.392 kb on - strand at 613.511 kb on + strand, within Echvi_0546 at 613.511 kb on + strand, within Echvi_0546 at 613.556 kb on - strand, within Echvi_0546 at 613.560 kb on + strand, within Echvi_0546 at 613.560 kb on + strand, within Echvi_0546 at 613.561 kb on - strand, within Echvi_0546 at 613.601 kb on + strand, within Echvi_0546 at 613.602 kb on - strand, within Echvi_0546 at 613.603 kb on + strand, within Echvi_0546 at 613.745 kb on + strand, within Echvi_0546 at 613.745 kb on + strand, within Echvi_0546 at 613.763 kb on + strand, within Echvi_0546 at 613.820 kb on + strand, within Echvi_0546 at 613.820 kb on + strand, within Echvi_0546 at 613.853 kb on + strand, within Echvi_0546 at 613.853 kb on + strand, within Echvi_0546 at 613.855 kb on + strand, within Echvi_0546 at 613.965 kb on + strand, within Echvi_0546 at 613.966 kb on - strand, within Echvi_0546 at 614.010 kb on + strand, within Echvi_0546 at 614.010 kb on + strand, within Echvi_0546 at 614.010 kb on + strand, within Echvi_0546 at 614.011 kb on - strand, within Echvi_0546 at 614.011 kb on - strand, within Echvi_0546 at 614.054 kb on - strand at 614.110 kb on - strand at 614.110 kb on - strand at 614.113 kb on + strand at 614.114 kb on - strand at 614.114 kb on - strand at 614.114 kb on - strand at 614.114 kb on - strand at 614.114 kb on - strand at 614.114 kb on - strand at 614.153 kb on + strand at 614.157 kb on - strand at 614.224 kb on + strand at 614.224 kb on + strand at 614.237 kb on + strand at 614.242 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml remove 610,053 + Echvi_0544 0.67 +0.3 610,054 - Echvi_0544 0.67 +0.1 610,078 - Echvi_0544 0.68 -0.5 610,092 - Echvi_0544 0.68 -1.5 610,092 - Echvi_0544 0.68 -1.0 610,092 - Echvi_0544 0.68 +0.0 610,126 + Echvi_0544 0.69 -1.7 610,126 + Echvi_0544 0.69 -0.5 610,159 + Echvi_0544 0.71 +0.3 610,203 + Echvi_0544 0.72 +0.1 610,204 - Echvi_0544 0.73 -1.1 610,250 + Echvi_0544 0.74 -0.9 610,250 + Echvi_0544 0.74 +0.9 610,250 + Echvi_0544 0.74 +0.4 610,250 + Echvi_0544 0.74 +0.1 610,250 + Echvi_0544 0.74 -1.2 610,250 + Echvi_0544 0.74 +1.5 610,250 + Echvi_0544 0.74 -1.4 610,250 + Echvi_0544 0.74 +0.6 610,250 + Echvi_0544 0.74 +0.8 610,251 - Echvi_0544 0.74 -2.7 610,251 - Echvi_0544 0.74 +0.5 610,251 - Echvi_0544 0.74 -0.9 610,251 - Echvi_0544 0.74 -1.9 610,251 - Echvi_0544 0.74 -1.1 610,251 - Echvi_0544 0.74 -0.2 610,251 - Echvi_0544 0.74 +0.3 610,270 + Echvi_0544 0.75 +1.1 610,271 - Echvi_0544 0.75 +0.2 610,357 + Echvi_0544 0.79 +1.1 610,357 + Echvi_0544 0.79 +0.6 610,358 - Echvi_0544 0.79 -0.8 610,358 - Echvi_0544 0.79 +0.1 610,392 + Echvi_0544 0.80 +1.0 610,402 + Echvi_0544 0.80 -0.0 610,402 + Echvi_0544 0.80 +0.3 610,471 + Echvi_0544 0.83 -0.6 610,472 - Echvi_0544 0.83 +0.4 610,491 - Echvi_0544 0.84 -1.8 610,491 - Echvi_0544 0.84 +0.1 610,499 + Echvi_0544 0.84 +1.5 610,499 + Echvi_0544 0.84 +0.8 610,519 + Echvi_0544 0.85 -0.0 610,519 + Echvi_0544 0.85 -0.6 610,520 - Echvi_0544 0.85 -1.2 610,526 - Echvi_0544 0.85 -0.3 610,531 + Echvi_0544 0.86 -0.9 610,547 - Echvi_0544 0.86 -0.5 610,547 - Echvi_0544 0.86 +1.3 610,588 - Echvi_0544 0.88 +0.8 610,589 + Echvi_0544 0.88 +0.6 610,590 - Echvi_0544 0.88 +0.9 610,617 + Echvi_0544 0.89 -0.6 610,618 - Echvi_0544 0.89 +0.1 610,662 + +0.8 610,696 + -1.2 610,697 - -2.4 610,700 - -0.0 610,703 - -0.6 610,743 + +0.6 610,744 - -0.1 610,763 + +0.8 610,771 + +2.5 610,771 + +0.2 610,793 - +0.5 610,797 + +2.6 610,797 + -0.1 610,797 + +1.5 610,798 - +1.6 610,798 - -1.1 610,798 - -0.1 610,798 - -0.2 610,798 - +0.8 610,798 - +0.2 610,838 + +2.3 610,892 + -0.0 610,904 + -0.8 610,914 - -0.3 610,939 + -0.7 610,940 - +0.1 610,940 - -0.2 610,941 + -2.6 610,942 - -0.6 610,942 - +0.1 610,962 - +1.3 610,970 - +1.1 611,159 - -1.1 611,269 - Echvi_0545 0.10 +0.3 611,269 - Echvi_0545 0.10 +1.0 611,269 - Echvi_0545 0.10 -1.1 611,269 - Echvi_0545 0.10 +1.2 611,332 - Echvi_0545 0.13 +0.2 611,396 + Echvi_0545 0.16 -0.5 611,423 - Echvi_0545 0.17 +0.3 611,423 - Echvi_0545 0.17 +0.5 611,423 - Echvi_0545 0.17 +0.5 611,424 + Echvi_0545 0.17 -0.1 611,425 - Echvi_0545 0.17 +1.7 611,425 - Echvi_0545 0.17 +1.9 611,470 - Echvi_0545 0.19 +0.7 611,470 - Echvi_0545 0.19 +0.1 611,470 - Echvi_0545 0.19 -1.6 611,500 + Echvi_0545 0.21 +0.6 611,505 - Echvi_0545 0.21 +1.8 611,619 - Echvi_0545 0.26 +0.9 611,684 + Echvi_0545 0.29 +0.8 611,710 + Echvi_0545 0.30 -1.6 611,711 - Echvi_0545 0.30 -1.2 611,713 + Echvi_0545 0.30 -0.3 611,714 - Echvi_0545 0.31 +1.7 611,714 - Echvi_0545 0.31 +0.0 611,714 - Echvi_0545 0.31 -1.2 611,758 + Echvi_0545 0.33 +1.1 611,772 + Echvi_0545 0.33 +0.2 611,989 - Echvi_0545 0.43 -0.1 612,067 + Echvi_0545 0.47 -0.8 612,068 - Echvi_0545 0.47 -0.1 612,086 - Echvi_0545 0.47 -0.3 612,086 - Echvi_0545 0.47 -0.5 612,157 + Echvi_0545 0.51 +0.2 612,158 - Echvi_0545 0.51 +0.5 612,186 + Echvi_0545 0.52 -0.7 612,186 + Echvi_0545 0.52 -0.2 612,187 - Echvi_0545 0.52 -0.5 612,187 - Echvi_0545 0.52 +0.4 612,217 - Echvi_0545 0.53 +2.1 612,276 + Echvi_0545 0.56 -0.0 612,276 + Echvi_0545 0.56 -1.4 612,415 + Echvi_0545 0.62 -0.2 612,415 + Echvi_0545 0.62 -0.3 612,415 + Echvi_0545 0.62 +1.2 612,415 + Echvi_0545 0.62 +0.3 612,416 - Echvi_0545 0.62 +3.1 612,417 + Echvi_0545 0.62 +0.5 612,420 + Echvi_0545 0.63 +0.0 612,420 + Echvi_0545 0.63 -3.2 612,460 + Echvi_0545 0.64 -1.4 612,460 + Echvi_0545 0.64 -0.4 612,461 - Echvi_0545 0.64 +0.5 612,462 + Echvi_0545 0.64 +2.7 612,494 - Echvi_0545 0.66 -0.5 612,525 + Echvi_0545 0.67 -0.7 612,548 + Echvi_0545 0.68 -0.1 612,553 - Echvi_0545 0.69 -0.6 612,569 - Echvi_0545 0.69 +0.8 612,569 - Echvi_0545 0.69 -0.8 612,569 - Echvi_0545 0.69 +1.0 612,624 + Echvi_0545 0.72 -0.6 612,625 - Echvi_0545 0.72 -0.3 612,625 - Echvi_0545 0.72 +0.4 612,627 + Echvi_0545 0.72 +0.0 612,628 - Echvi_0545 0.72 -0.3 612,636 + Echvi_0545 0.72 -0.2 612,637 - Echvi_0545 0.72 -0.6 612,637 - Echvi_0545 0.72 +1.2 612,647 - Echvi_0545 0.73 +1.0 612,658 - Echvi_0545 0.73 -0.3 612,658 - Echvi_0545 0.73 +0.3 612,662 - Echvi_0545 0.74 +0.7 612,705 + Echvi_0545 0.76 +1.1 612,736 + Echvi_0545 0.77 -0.0 612,736 + Echvi_0545 0.77 -1.5 612,737 - Echvi_0545 0.77 +1.3 612,737 - Echvi_0545 0.77 -0.8 612,737 - Echvi_0545 0.77 +1.5 612,737 - Echvi_0545 0.77 +0.4 612,739 - Echvi_0545 0.77 -0.8 612,775 - Echvi_0545 0.79 +0.5 612,792 - Echvi_0545 0.79 -0.5 612,858 + Echvi_0545 0.82 +0.5 612,858 + Echvi_0545 0.82 +0.3 612,859 - Echvi_0545 0.83 +1.3 612,859 - Echvi_0545 0.83 +1.3 612,868 + Echvi_0545 0.83 +1.5 612,869 - Echvi_0545 0.83 -1.1 612,869 - Echvi_0545 0.83 -0.3 612,887 - Echvi_0545 0.84 +2.2 613,043 - +1.4 613,043 - -0.5 613,190 - -1.2 613,221 + -0.9 613,222 - +0.4 613,227 - +0.3 613,304 - -1.7 613,314 + -1.3 613,315 - +0.2 613,348 + +0.9 613,349 - +0.3 613,391 + -1.8 613,392 - -0.8 613,511 + Echvi_0546 0.24 -2.1 613,511 + Echvi_0546 0.24 +0.4 613,556 - Echvi_0546 0.29 -0.1 613,560 + Echvi_0546 0.30 +1.1 613,560 + Echvi_0546 0.30 -0.2 613,561 - Echvi_0546 0.30 +0.9 613,601 + Echvi_0546 0.35 -0.4 613,602 - Echvi_0546 0.35 +0.1 613,603 + Echvi_0546 0.35 -0.2 613,745 + Echvi_0546 0.53 -0.2 613,745 + Echvi_0546 0.53 +1.1 613,763 + Echvi_0546 0.55 +0.4 613,820 + Echvi_0546 0.62 +0.8 613,820 + Echvi_0546 0.62 +0.5 613,853 + Echvi_0546 0.66 -0.2 613,853 + Echvi_0546 0.66 +0.5 613,855 + Echvi_0546 0.66 +1.6 613,965 + Echvi_0546 0.80 +0.9 613,966 - Echvi_0546 0.80 +3.0 614,010 + Echvi_0546 0.85 +0.1 614,010 + Echvi_0546 0.85 -0.4 614,010 + Echvi_0546 0.85 +0.2 614,011 - Echvi_0546 0.85 +0.3 614,011 - Echvi_0546 0.85 -0.3 614,054 - -1.3 614,110 - -0.9 614,110 - -0.5 614,113 + -0.2 614,114 - +1.5 614,114 - +0.3 614,114 - -0.4 614,114 - +0.9 614,114 - +0.3 614,114 - +0.1 614,153 + +0.2 614,157 - -0.9 614,224 + -0.7 614,224 + -1.2 614,237 + -0.8 614,242 + +1.1
Or see this region's nucleotide sequence